Literature DB >> 21202152

6-Meth-oxy-2,3,4,9-tetra-hydro-1H-carbazol-1-one.

M Sridharan, K J Rajendra Prasad, A Thomas Gunaseelan, A Thiruvalluvar, A Linden.   

Abstract

The carbazole unit of the title mol-ecule, C(13)H(13)NO(2), is not planar. The dihedral angle between the benzene ring and the pyrrole ring is 1.69 (6)°. The cyclo-hexene ring adopts an envelope conformation. Inter-molecular C-H⋯O and N-H⋯O hydrogen bonds are present in the crystal structure. A C-H⋯π inter-action, involving the benzene ring, is also found in the crystal structure.

Entities:  

Year:  2008        PMID: 21202152      PMCID: PMC2960955          DOI: 10.1107/S1600536808007885

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bhattacharya & Chakraborty (1987 ▶); Chakraborty & Roy (1991 ▶); Chakraborty (1993 ▶); Knolker (1986 ▶); Lescot et al. (1986 ▶); Hook et al. (1990 ▶); Hirata et al. (1999 ▶); Kapil (1971 ▶); Knolker & Reddy (2002 ▶); Sowmithran & Rajendra Prasad (1986 ▶); Rajendra Prasad & Vijayalakshmi (1994 ▶). Gunaseelan et al. (2007a ▶,b ▶) and Thiruvalluvar et al. (2007 ▶) have reported the crystal structures of substituted carbazole derivatives, in which the carbazole units are not planar.

Experimental

Crystal data

C13H13NO2 M = 215.24 Monoclinic, a = 9.0627 (2) Å b = 14.0285 (3) Å c = 8.5506 (2) Å β = 101.815 (1)° V = 1064.06 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 160 (1) K 0.35 × 0.28 × 0.13 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: none 28554 measured reflections 3077 independent reflections 2601 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.145 S = 1.12 3077 reflections 149 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.24 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN and SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808007885/wn2245sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007885/wn2245Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13NO2F000 = 456
Mr = 215.24Dx = 1.344 Mg m3
Monoclinic, P21/cMelting point: 536 K
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 9.0627 (2) ÅCell parameters from 3175 reflections
b = 14.0285 (3) Åθ = 2.0–30.0º
c = 8.5506 (2) ŵ = 0.09 mm1
β = 101.815 (1)ºT = 160 (1) K
V = 1064.06 (4) Å3Tablet, colourless
Z = 40.35 × 0.28 × 0.13 mm
Nonius KappaCCD area-detector diffractometer3077 independent reflections
Radiation source: Nonius FR590 sealed tube generator2601 reflections with I > 2σ(I)
Monochromator: horizontally mounted graphite crystalRint = 0.038
Detector resolution: 9 pixels mm-1θmax = 30.0º
T = 160(1) Kθmin = 2.3º
φ and ω scans with κ offsetsh = −12→12
Absorption correction: nonek = 0→19
28554 measured reflectionsl = 0→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.146  w = 1/[σ2(Fo2) + (0.0825P)2 + 0.2332P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
3077 reflectionsΔρmax = 0.33 e Å3
149 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. Solvent used: EtOH Cooling Device: Oxford Cryosystems Cryostream 700 Crystal mount: glued on a glass fibre Mosaicity (°.): 0.742 (2) Frames collected: 359 Seconds exposure per frame: 100 Degrees rotation per frame: 2.0 Crystal-Detector distance (mm): 30.0
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.53223 (10)0.52978 (7)0.72771 (11)0.0324 (3)
O2−0.29638 (10)0.67151 (8)0.18475 (11)0.0354 (3)
N90.27900 (11)0.55709 (7)0.45710 (11)0.0229 (3)
C10.41200 (13)0.56555 (8)0.74513 (13)0.0229 (3)
C20.38660 (13)0.59515 (9)0.90781 (13)0.0251 (3)
C30.27324 (13)0.67715 (8)0.90149 (13)0.0236 (3)
C40.12214 (12)0.65469 (8)0.79020 (12)0.0213 (3)
C4A0.14868 (12)0.61976 (7)0.63321 (12)0.0196 (3)
C4B0.05307 (12)0.61980 (7)0.47874 (13)0.0197 (3)
C5−0.09638 (12)0.65107 (8)0.42156 (13)0.0219 (3)
C6−0.15394 (12)0.64344 (8)0.25953 (13)0.0241 (3)
C7−0.06690 (13)0.60611 (8)0.15394 (13)0.0253 (3)
C80.07867 (13)0.57456 (8)0.20802 (13)0.0236 (3)
C8A0.13856 (12)0.58090 (7)0.37241 (13)0.0208 (3)
C9A0.28448 (12)0.58046 (8)0.61527 (13)0.0213 (3)
C16−0.38951 (15)0.71146 (13)0.28342 (18)0.0441 (5)
H2A0.484200.614840.974910.0301*
H2B0.349780.539390.959630.0301*
H3A0.256280.689461.010440.0283*
H3B0.316070.735720.863900.0283*
H4A0.068030.605390.839380.0256*
H4B0.058820.712780.773730.0256*
H5−0.155090.676410.491920.0262*
H7−0.109880.602720.043000.0303*
H80.136330.549420.136480.0284*
H90.3587 (19)0.5296 (12)0.416 (2)0.038 (4)*
H16A−0.487420.728860.217420.0661*
H16B−0.340890.768450.336970.0661*
H16C−0.404280.664540.363740.0661*
U11U22U33U12U13U23
O10.0269 (5)0.0436 (5)0.0274 (4)0.0137 (4)0.0075 (3)−0.0016 (4)
O20.0230 (4)0.0513 (6)0.0293 (5)0.0061 (4)−0.0008 (3)−0.0103 (4)
N90.0239 (5)0.0262 (5)0.0202 (4)0.0049 (3)0.0084 (3)−0.0009 (3)
C10.0245 (5)0.0232 (5)0.0222 (5)0.0045 (4)0.0076 (4)0.0004 (4)
C20.0249 (5)0.0302 (6)0.0205 (5)0.0067 (4)0.0054 (4)−0.0010 (4)
C30.0235 (5)0.0252 (5)0.0227 (5)0.0028 (4)0.0064 (4)−0.0045 (4)
C40.0224 (5)0.0233 (5)0.0196 (5)0.0030 (4)0.0073 (4)−0.0010 (4)
C4A0.0215 (5)0.0188 (5)0.0199 (5)0.0012 (3)0.0073 (4)0.0012 (3)
C4B0.0215 (5)0.0182 (5)0.0205 (5)−0.0004 (4)0.0071 (4)−0.0004 (3)
C50.0212 (5)0.0223 (5)0.0232 (5)−0.0014 (4)0.0071 (4)−0.0022 (4)
C60.0208 (5)0.0260 (5)0.0249 (5)−0.0018 (4)0.0036 (4)−0.0033 (4)
C70.0274 (6)0.0272 (5)0.0211 (5)−0.0025 (4)0.0045 (4)−0.0034 (4)
C80.0276 (5)0.0245 (5)0.0204 (5)−0.0009 (4)0.0089 (4)−0.0025 (4)
C8A0.0231 (5)0.0200 (5)0.0210 (5)0.0001 (4)0.0085 (4)−0.0005 (3)
C9A0.0232 (5)0.0222 (5)0.0197 (5)0.0030 (4)0.0073 (4)0.0002 (4)
C160.0261 (6)0.0610 (10)0.0421 (8)0.0118 (6)0.0000 (5)−0.0185 (7)
O1—C11.2360 (15)C6—C71.4154 (16)
O2—C61.3756 (15)C7—C81.3785 (17)
O2—C161.4247 (18)C8—C8A1.4021 (15)
N9—C8A1.3706 (15)C2—H2A0.9900
N9—C9A1.3826 (14)C2—H2B0.9900
N9—H90.948 (17)C3—H3A0.9900
C1—C9A1.4446 (16)C3—H3B0.9900
C1—C21.5138 (16)C4—H4A0.9900
C2—C31.5359 (17)C4—H4B0.9900
C3—C41.5318 (16)C5—H50.9500
C4—C4A1.4940 (14)C7—H70.9500
C4A—C4B1.4236 (15)C8—H80.9500
C4A—C9A1.3854 (16)C16—H16A0.9800
C4B—C8A1.4189 (15)C16—H16B0.9800
C4B—C51.4124 (16)C16—H16C0.9800
C5—C61.3810 (15)
O1···N92.9314 (13)C16···H3Bviii2.9800
O1···N9i2.8313 (14)H2A···O2x2.5200
O1···H92.804 (17)H2A···C16x2.9800
O1···H2Bii2.8400H2A···H16Ax2.5900
O1···H9i1.918 (17)H2B···O1ii2.8400
O2···H2Aiii2.5200H2B···C2ii3.0700
N9···O12.9314 (13)H3A···C8xi3.0300
N9···O1i2.8313 (14)H3A···H8xi2.5900
C1···C16iv3.590 (2)H3B···C9A3.0200
C2···C2ii3.5370 (17)H3B···C8Av3.0400
C3···C8Av3.5983 (15)H3B···C16iv2.9800
C4B···C4Bvi3.5353 (14)H3B···H16Aiv2.4300
C6···C9Avi3.5958 (16)H4A···C7vi2.9700
C8A···C3vii3.5983 (15)H4A···C8vi2.8400
C9A···C6vi3.5958 (16)H4B···C4Bv2.9400
C16···C1viii3.590 (2)H4B···C5v2.8200
C1···H16Aiv3.0500H4B···C6v2.7800
C1···H9i3.028 (17)H4B···C7v2.8900
C2···H2Bii3.0700H4B···C8v3.0500
C4B···H4Bvii2.9400H4B···C8Av3.0600
C5···H16C2.7400H5···C162.5300
C5···H4Bvii2.8200H5···H16B2.3100
C5···H16B2.7400H5···H16C2.3100
C6···H4Bvii2.7800H8···H3Aix2.5900
C7···H4Bvii2.8900H9···O12.804 (17)
C7···H4Avi2.9700H9···O1i1.918 (17)
C8···H4Bvii3.0500H9···C1i3.028 (17)
C8···H4Avi2.8400H16A···H2Aiii2.5900
C8···H3Aix3.0300H16A···C1viii3.0500
C8A···H4Bvii3.0600H16A···H3Bviii2.4300
C8A···H3Bvii3.0400H16B···C52.7400
C9A···H3B3.0200H16B···H52.3100
C16···H2Aiii2.9800H16C···C52.7400
C16···H52.5300H16C···H52.3100
C6—O2—C16116.79 (10)C1—C2—H2A109.00
C8A—N9—C9A107.61 (9)C1—C2—H2B109.00
C9A—N9—H9125.6 (10)C3—C2—H2A109.00
C8A—N9—H9126.8 (10)C3—C2—H2B109.00
O1—C1—C9A123.53 (10)H2A—C2—H2B108.00
O1—C1—C2121.72 (10)C2—C3—H3A109.00
C2—C1—C9A114.73 (10)C2—C3—H3B109.00
C1—C2—C3113.55 (9)C4—C3—H3A109.00
C2—C3—C4111.98 (9)C4—C3—H3B109.00
C3—C4—C4A109.74 (9)H3A—C3—H3B108.00
C4B—C4A—C9A106.45 (9)C3—C4—H4A110.00
C4—C4A—C4B130.85 (10)C3—C4—H4B110.00
C4—C4A—C9A122.69 (10)C4A—C4—H4A110.00
C5—C4B—C8A120.56 (10)C4A—C4—H4B110.00
C4A—C4B—C8A106.61 (9)H4A—C4—H4B108.00
C4A—C4B—C5132.82 (10)C4B—C5—H5121.00
C4B—C5—C6117.50 (10)C6—C5—H5121.00
O2—C6—C5124.74 (10)C6—C7—H7119.00
O2—C6—C7113.70 (10)C8—C7—H7119.00
C5—C6—C7121.55 (10)C7—C8—H8121.00
C6—C7—C8121.66 (10)C8A—C8—H8121.00
C7—C8—C8A117.60 (10)O2—C16—H16A109.00
N9—C8A—C8129.88 (10)O2—C16—H16B109.00
C4B—C8A—C8121.11 (10)O2—C16—H16C109.00
N9—C8A—C4B108.97 (9)H16A—C16—H16B109.00
C1—C9A—C4A124.16 (10)H16A—C16—H16C109.00
N9—C9A—C1125.48 (10)H16B—C16—H16C109.00
N9—C9A—C4A110.36 (10)
C16—O2—C6—C50.21 (18)C4B—C4A—C9A—N90.74 (12)
C16—O2—C6—C7−178.89 (12)C9A—C4A—C4B—C8A−0.84 (11)
C9A—N9—C8A—C8177.52 (11)C4—C4A—C9A—N9−178.17 (10)
C8A—N9—C9A—C4A−0.35 (12)C4—C4A—C4B—C8A177.95 (10)
C9A—N9—C8A—C4B−0.20 (12)C9A—C4A—C4B—C5−179.48 (11)
C8A—N9—C9A—C1179.00 (10)C5—C4B—C8A—N9179.49 (10)
C9A—C1—C2—C3−29.21 (14)C4A—C4B—C8A—N90.65 (12)
O1—C1—C2—C3152.17 (11)C5—C4B—C8A—C81.54 (16)
C2—C1—C9A—N9−178.39 (11)C4A—C4B—C5—C6177.60 (11)
C2—C1—C9A—C4A0.87 (16)C8A—C4B—C5—C6−0.89 (16)
O1—C1—C9A—C4A179.47 (11)C4A—C4B—C8A—C8−177.31 (10)
O1—C1—C9A—N90.21 (19)C4B—C5—C6—O2−179.27 (11)
C1—C2—C3—C454.63 (13)C4B—C5—C6—C7−0.24 (16)
C2—C3—C4—C4A−49.23 (12)O2—C6—C7—C8179.92 (11)
C3—C4—C4A—C4B−156.37 (11)C5—C6—C7—C80.80 (18)
C3—C4—C4A—C9A22.25 (14)C6—C7—C8—C8A−0.17 (17)
C4—C4A—C4B—C5−0.7 (2)C7—C8—C8A—N9−178.45 (11)
C4B—C4A—C9A—C1−178.62 (10)C7—C8—C8A—C4B−0.97 (16)
C4—C4A—C9A—C12.47 (17)
D—H···AD—HH···AD···AD—H···A
N9—H9···O1i0.948 (17)1.918 (17)2.8313 (14)161.2 (15)
C2—H2A···O2x0.992.523.4962 (15)169
C4—H4B···Cgv0.992.573.492 (1)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N9—H9⋯O1i0.948 (17)1.918 (17)2.8313 (14)161.2 (15)
C2—H2A⋯O2ii0.992.523.4962 (15)169
C4—H4BCgiii0.992.573.492 (1)156

Symmetry codes: (i) ; (ii) ; (iii) . Cg is the centroid of the benzene ring.

  5 in total

1.  Substituted 7H-pyrido[4,3-c]carbazoles with potent anti-HIV activity.

Authors:  K Hirata; C Ito; H Furukawa; M Itoigawa; L M Cosentino; K H Lee
Journal:  Bioorg Med Chem Lett       Date:  1999-01-18       Impact factor: 2.823

Review 2.  Isolation and synthesis of biologically active carbazole alkaloids.

Authors:  Hans-Joachim Knölker; Kethiri R Reddy
Journal:  Chem Rev       Date:  2002-11       Impact factor: 60.622

3.  Identification of the inhibitory activity of carbazomycins B and C against 5-lipoxygenase, a new activity for these compounds.

Authors:  D J Hook; J J Yacobucci; S O'Connor; M Lee; E Kerns; B Krishnan; J Matson; G Hesler
Journal:  J Antibiot (Tokyo)       Date:  1990-10       Impact factor: 2.649

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Synthesis of 11H-pyridocarbazoles and derivatives. Comparison of their DNA binding and antitumor activity with those of 6H- and 7H-pyridocarbazoles.

Authors:  E Lescot; G Muzard; J Markovits; J Belleney; B P Roques; J B Le Pecq
Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

  5 in total
  4 in total

1.  3-Methyl-3,4-dihydro-9H-carbazol-1(2H)-one.

Authors:  A Thomas Gunaseelan; K Prabakaran; K J Rajendra Prasad; A Thiruvalluvar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-22

2.  6-Chloro-3,4-di-hydro-9H-carbazol-1(2H)-one.

Authors:  M Sridharan; K J Rajendra Prasad; A Thomas Gunaseelan; A Thiruvalluvar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

3.  2-(2,3,4,9-Tetra-hydro-1H-carbazol-1-ylidene)propane-dinitrile.

Authors:  R Archana; K Prabakaran; K J Rajendra Prasad; A Thiruvalluvar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-18

4.  8-Methyl-2,3,4,9-tetra-hydro-1H-carbazol-1-one.

Authors:  R Archana; E Yamuna; K J Rajendra Prasad; A Thiruvalluvar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11
  4 in total

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