| Literature DB >> 21202151 |
Nezha Rajouani, My Youssef Ait Itto, Ahmed Benharref, Aziz Auhmani, Jean-Claude Daran.
Abstract
The title compound, C(20)H(28)O(2), commonly named Sugiol, is a natural oxygenated diterpene that we have isolated for the first time from a hexane extract of the fruits of Juniperus Oxycedrus L. Its X-ray crystal structure determination confirms an abietane skeleton which was predicted by spectroscopic analysis, mainly by (1)H and (13)C NMR. The cyclo-hexane ring adopts a flattened chair conformation, while the cyclo-hexene ring adopts an envelope conformation. The mol-ecules are linked through O-H⋯O hydrogen bonds to form a zigzag chain extending parallel to the c axis.Entities:
Year: 2008 PMID: 21202151 PMCID: PMC2960938 DOI: 10.1107/S1600536808007769
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H28O2 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 3571 reflections |
| θ = 2.7–32.1º | |
| µ = 0.07 mm−1 | |
| Flattened box, colorless | |
| 0.31 × 0.16 × 0.07 mm |
| Oxford Diffraction Xcalibur diffractometer | 2003 independent reflections |
| Radiation source: fine-focus sealed tube | 1212 reflections with |
| Monochromator: graphite | |
| Detector resolution: 8.2632 pixels mm-1 | θmax = 26.4º |
| θmin = 2.7º | |
| ω and φ scans | |
| Absorption correction: none | |
| 13398 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2003 reflections | Δρmax = 0.36 e Å−3 |
| 205 parameters | Δρmin = −0.38 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
| C1 | 0.0789 (4) | 0.8588 (3) | 0.0839 (3) | 0.0291 (10) | |
| C2 | 0.1754 (4) | 0.9176 (3) | 0.1515 (3) | 0.0339 (11) | |
| H2A | 0.2674 | 0.9211 | 0.1234 | 0.041* | |
| H2B | 0.1418 | 0.9894 | 0.1588 | 0.041* | |
| C3 | 0.1869 (5) | 0.8673 (3) | 0.2486 (3) | 0.0366 (11) | |
| H3A | 0.0966 | 0.8681 | 0.2794 | 0.044* | |
| H3B | 0.2511 | 0.9077 | 0.2874 | 0.044* | |
| C4 | 0.2389 (4) | 0.7525 (3) | 0.2400 (3) | 0.0296 (10) | |
| H4A | 0.2430 | 0.7215 | 0.3029 | 0.036* | |
| H4B | 0.3327 | 0.7531 | 0.2145 | 0.036* | |
| C4A | 0.1464 (4) | 0.6828 (3) | 0.1762 (3) | 0.0217 (9) | |
| C4B | 0.2182 (4) | 0.5776 (3) | 0.1555 (3) | 0.0202 (9) | |
| C5 | 0.3090 (4) | 0.5314 (3) | 0.2203 (3) | 0.0252 (9) | |
| H5 | 0.3286 | 0.5661 | 0.2768 | 0.030* | |
| C6 | 0.3699 (4) | 0.4356 (3) | 0.2023 (3) | 0.0255 (9) | |
| C7 | 0.3444 (4) | 0.3792 (3) | 0.1186 (3) | 0.0296 (10) | |
| C8 | 0.2533 (4) | 0.4252 (3) | 0.0564 (3) | 0.0244 (10) | |
| H8 | 0.2335 | 0.3898 | 0.0002 | 0.029* | |
| C8A | 0.1892 (4) | 0.5211 (3) | 0.0724 (3) | 0.0219 (9) | |
| C9 | 0.0961 (4) | 0.5626 (3) | 0.0010 (3) | 0.0220 (9) | |
| C10 | 0.0395 (4) | 0.6713 (3) | 0.0137 (3) | 0.0307 (10) | |
| H10A | −0.0545 | 0.6663 | 0.0384 | 0.037* | |
| H10B | 0.0344 | 0.7054 | −0.0479 | 0.037* | |
| C10A | 0.1257 (4) | 0.7408 (3) | 0.0804 (3) | 0.0227 (9) | |
| H10C | 0.2186 | 0.7426 | 0.0518 | 0.027* | |
| C11 | 0.0945 (5) | 0.9073 (3) | −0.0143 (3) | 0.0455 (13) | |
| H11A | 0.0847 | 0.9826 | −0.0099 | 0.068* | |
| H11B | 0.0239 | 0.8795 | −0.0556 | 0.068* | |
| H11C | 0.1847 | 0.8905 | −0.0393 | 0.068* | |
| C12 | −0.0741 (4) | 0.8754 (3) | 0.1138 (3) | 0.0397 (12) | |
| H12A | −0.1013 | 0.9468 | 0.1006 | 0.060* | |
| H12B | −0.0836 | 0.8618 | 0.1805 | 0.060* | |
| H12C | −0.1328 | 0.8278 | 0.0790 | 0.060* | |
| C13 | 0.0112 (4) | 0.6551 (3) | 0.2292 (3) | 0.0333 (11) | |
| H13A | −0.0494 | 0.6162 | 0.1879 | 0.050* | |
| H13B | −0.0343 | 0.7190 | 0.2490 | 0.050* | |
| H13C | 0.0328 | 0.6130 | 0.2839 | 0.050* | |
| C14 | 0.4133 (5) | 0.2730 (3) | 0.1025 (3) | 0.0322 (11) | |
| H14 | 0.5100 | 0.2792 | 0.1240 | 0.039* | |
| C15 | 0.4171 (6) | 0.2384 (4) | 0.0019 (4) | 0.0672 (18) | |
| H15A | 0.3239 | 0.2261 | −0.0201 | 0.101* | |
| H15B | 0.4701 | 0.1743 | −0.0032 | 0.101* | |
| H15C | 0.4598 | 0.2923 | −0.0362 | 0.101* | |
| C16 | 0.3443 (6) | 0.1868 (4) | 0.1627 (4) | 0.0614 (16) | |
| H16A | 0.2516 | 0.1744 | 0.1399 | 0.092* | |
| H16B | 0.3406 | 0.2093 | 0.2277 | 0.092* | |
| H16C | 0.3976 | 0.1229 | 0.1582 | 0.092* | |
| O6 | 0.4598 (3) | 0.3917 (2) | 0.2654 (2) | 0.0353 (8) | |
| H6 | 0.4641 | 0.4287 | 0.3131 | 0.053* | |
| O9 | 0.0639 (3) | 0.5113 (2) | −0.06942 (18) | 0.0304 (7) |
| C1 | 0.033 (2) | 0.018 (2) | 0.036 (2) | 0.0086 (18) | −0.001 (2) | 0.0033 (19) |
| C2 | 0.033 (2) | 0.021 (2) | 0.048 (3) | 0.0042 (19) | 0.000 (2) | −0.002 (2) |
| C3 | 0.032 (2) | 0.029 (2) | 0.048 (3) | 0.001 (2) | −0.008 (2) | −0.014 (2) |
| C4 | 0.032 (2) | 0.027 (2) | 0.029 (2) | 0.0046 (19) | −0.0046 (19) | −0.0085 (19) |
| C4A | 0.022 (2) | 0.021 (2) | 0.022 (2) | −0.0028 (16) | −0.0010 (18) | 0.0000 (17) |
| C4B | 0.0183 (18) | 0.0196 (19) | 0.023 (2) | −0.0009 (16) | 0.0041 (18) | 0.0026 (17) |
| C5 | 0.028 (2) | 0.025 (2) | 0.023 (2) | −0.0008 (18) | 0.000 (2) | −0.0038 (18) |
| C6 | 0.029 (2) | 0.028 (2) | 0.019 (2) | 0.0069 (19) | 0.0023 (18) | 0.0033 (19) |
| C7 | 0.032 (3) | 0.025 (2) | 0.032 (2) | 0.0043 (19) | 0.007 (2) | 0.002 (2) |
| C8 | 0.028 (2) | 0.023 (2) | 0.022 (2) | 0.0025 (19) | −0.0002 (18) | 0.0010 (18) |
| C8A | 0.026 (2) | 0.0196 (19) | 0.020 (2) | −0.0039 (17) | −0.0026 (19) | 0.0021 (18) |
| C9 | 0.024 (2) | 0.021 (2) | 0.020 (2) | −0.0005 (17) | 0.0018 (18) | 0.0018 (18) |
| C10 | 0.033 (2) | 0.032 (2) | 0.027 (2) | 0.0024 (19) | −0.006 (2) | −0.0011 (19) |
| C10A | 0.021 (2) | 0.024 (2) | 0.023 (2) | 0.0048 (16) | −0.0008 (18) | −0.0035 (18) |
| C11 | 0.059 (3) | 0.029 (3) | 0.049 (3) | 0.008 (2) | 0.001 (3) | 0.011 (2) |
| C12 | 0.035 (3) | 0.035 (3) | 0.048 (3) | 0.013 (2) | −0.009 (2) | −0.010 (2) |
| C13 | 0.030 (2) | 0.033 (2) | 0.037 (3) | 0.0033 (19) | 0.003 (2) | 0.003 (2) |
| C14 | 0.036 (3) | 0.025 (2) | 0.035 (2) | 0.010 (2) | −0.002 (2) | 0.0025 (18) |
| C15 | 0.093 (5) | 0.065 (4) | 0.044 (3) | 0.045 (4) | 0.001 (3) | −0.011 (3) |
| C16 | 0.067 (4) | 0.036 (3) | 0.080 (4) | 0.006 (3) | 0.017 (3) | 0.006 (3) |
| O6 | 0.0436 (18) | 0.0353 (17) | 0.0271 (17) | 0.0196 (15) | −0.0073 (15) | −0.0031 (14) |
| O9 | 0.0393 (17) | 0.0288 (15) | 0.0231 (15) | 0.0002 (14) | −0.0061 (14) | −0.0076 (13) |
| C1—C11 | 1.521 (6) | C8A—C9 | 1.445 (5) |
| C1—C2 | 1.524 (6) | C9—O9 | 1.226 (4) |
| C1—C12 | 1.543 (6) | C9—C10 | 1.491 (5) |
| C1—C10A | 1.561 (5) | C10—C10A | 1.530 (5) |
| C2—C3 | 1.514 (6) | C10—H10A | 0.9700 |
| C2—H2A | 0.9700 | C10—H10B | 0.9700 |
| C2—H2B | 0.9700 | C10A—H10C | 0.9800 |
| C3—C4 | 1.542 (5) | C11—H11A | 0.9600 |
| C3—H3A | 0.9700 | C11—H11B | 0.9600 |
| C3—H3B | 0.9700 | C11—H11C | 0.9600 |
| C4—C4A | 1.542 (5) | C12—H12A | 0.9600 |
| C4—H4A | 0.9700 | C12—H12B | 0.9600 |
| C4—H4B | 0.9700 | C12—H12C | 0.9600 |
| C4A—C4B | 1.528 (5) | C13—H13A | 0.9600 |
| C4A—C13 | 1.539 (5) | C13—H13B | 0.9600 |
| C4A—C10A | 1.550 (5) | C13—H13C | 0.9600 |
| C4B—C5 | 1.391 (5) | C14—C15 | 1.485 (6) |
| C4B—C8A | 1.401 (5) | C14—C16 | 1.532 (6) |
| C5—C6 | 1.370 (5) | C14—H14 | 0.9800 |
| C5—H5 | 0.9300 | C15—H15A | 0.9600 |
| C6—O6 | 1.359 (4) | C15—H15B | 0.9600 |
| C6—C7 | 1.401 (5) | C15—H15C | 0.9600 |
| C7—C8 | 1.369 (5) | C16—H16A | 0.9600 |
| C7—C14 | 1.517 (5) | C16—H16B | 0.9600 |
| C8—C8A | 1.380 (5) | C16—H16C | 0.9600 |
| C8—H8 | 0.9300 | O6—H6 | 0.8200 |
| C11—C1—C2 | 108.1 (4) | C8A—C9—C10 | 118.6 (3) |
| C11—C1—C12 | 106.7 (4) | C9—C10—C10A | 114.0 (3) |
| C2—C1—C12 | 110.0 (3) | C9—C10—H10A | 108.7 |
| C11—C1—C10A | 109.3 (3) | C10A—C10—H10A | 108.7 |
| C2—C1—C10A | 108.2 (3) | C9—C10—H10B | 108.7 |
| C12—C1—C10A | 114.4 (3) | C10A—C10—H10B | 108.7 |
| C3—C2—C1 | 113.9 (3) | H10A—C10—H10B | 107.6 |
| C3—C2—H2A | 108.8 | C10—C10A—C4A | 109.4 (3) |
| C1—C2—H2A | 108.8 | C10—C10A—C1 | 114.4 (3) |
| C3—C2—H2B | 108.8 | C4A—C10A—C1 | 117.6 (3) |
| C1—C2—H2B | 108.8 | C10—C10A—H10C | 104.6 |
| H2A—C2—H2B | 107.7 | C4A—C10A—H10C | 104.6 |
| C2—C3—C4 | 110.4 (3) | C1—C10A—H10C | 104.6 |
| C2—C3—H3A | 109.6 | C1—C11—H11A | 109.5 |
| C4—C3—H3A | 109.6 | C1—C11—H11B | 109.5 |
| C2—C3—H3B | 109.6 | H11A—C11—H11B | 109.5 |
| C4—C3—H3B | 109.6 | C1—C11—H11C | 109.5 |
| H3A—C3—H3B | 108.1 | H11A—C11—H11C | 109.5 |
| C3—C4—C4A | 113.5 (3) | H11B—C11—H11C | 109.5 |
| C3—C4—H4A | 108.9 | C1—C12—H12A | 109.5 |
| C4A—C4—H4A | 108.9 | C1—C12—H12B | 109.5 |
| C3—C4—H4B | 108.9 | H12A—C12—H12B | 109.5 |
| C4A—C4—H4B | 108.9 | C1—C12—H12C | 109.5 |
| H4A—C4—H4B | 107.7 | H12A—C12—H12C | 109.5 |
| C4B—C4A—C13 | 106.0 (3) | H12B—C12—H12C | 109.5 |
| C4B—C4A—C4 | 110.5 (3) | C4A—C13—H13A | 109.5 |
| C13—C4A—C4 | 109.5 (3) | C4A—C13—H13B | 109.5 |
| C4B—C4A—C10A | 107.8 (3) | H13A—C13—H13B | 109.5 |
| C13—C4A—C10A | 115.0 (3) | C4A—C13—H13C | 109.5 |
| C4—C4A—C10A | 108.1 (3) | H13A—C13—H13C | 109.5 |
| C5—C4B—C8A | 117.3 (3) | H13B—C13—H13C | 109.5 |
| C5—C4B—C4A | 121.6 (3) | C15—C14—C7 | 114.6 (4) |
| C8A—C4B—C4A | 121.0 (3) | C15—C14—C16 | 109.2 (4) |
| C6—C5—C4B | 121.3 (4) | C7—C14—C16 | 111.0 (4) |
| C6—C5—H5 | 119.4 | C15—C14—H14 | 107.2 |
| C4B—C5—H5 | 119.4 | C7—C14—H14 | 107.2 |
| O6—C6—C5 | 120.9 (4) | C16—C14—H14 | 107.2 |
| O6—C6—C7 | 117.0 (3) | C14—C15—H15A | 109.5 |
| C5—C6—C7 | 122.2 (4) | C14—C15—H15B | 109.5 |
| C8—C7—C6 | 115.8 (3) | H15A—C15—H15B | 109.5 |
| C8—C7—C14 | 124.1 (4) | C14—C15—H15C | 109.5 |
| C6—C7—C14 | 120.1 (4) | H15A—C15—H15C | 109.5 |
| C7—C8—C8A | 123.7 (4) | H15B—C15—H15C | 109.5 |
| C7—C8—H8 | 118.2 | C14—C16—H16A | 109.5 |
| C8A—C8—H8 | 118.2 | C14—C16—H16B | 109.5 |
| C8—C8A—C4B | 119.8 (4) | H16A—C16—H16B | 109.5 |
| C8—C8A—C9 | 118.9 (3) | C14—C16—H16C | 109.5 |
| C4B—C8A—C9 | 121.3 (3) | H16A—C16—H16C | 109.5 |
| O9—C9—C8A | 121.7 (3) | H16B—C16—H16C | 109.5 |
| O9—C9—C10 | 119.6 (4) | C6—O6—H6 | 109.5 |
| H··· | ||||
| O6—H6···O9i | 0.82 | 1.84 | 2.642 (4) | 165 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O6—H6⋯O9i | 0.82 | 1.84 | 2.642 (4) | 165 |
Symmetry code: (i) .