Literature DB >> 21202119

Diethyl 2-[(4-nitro-phen-yl)(4-phenyl-1,2,3-selenadiazol-5-yl)meth-yl]malonate.

A Marx, S Saravanan, S Muthusubramanian, V Manivannan, Nigam P Rath.   

Abstract

In the title compound, C(22)H(21)N(3)O(6)Se, the heterocyclic ring makes dihedral angles of 50.03 (11) and 67.75 (11)°, respectively, with the benzene and phenyl rings. The terminal C atoms of the ester groups are disordered over two positions: the site occupancies for the C atoms are 0.62 (3)/0.38 (3) and 0.48 (3)/0.52 (3). In the crystal structure, weak intra- and inter-molecular C-H⋯O inter-actions are observed.

Entities:  

Year:  2008        PMID: 21202119      PMCID: PMC2961064          DOI: 10.1107/S160053680800706X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activities, see: El-Kashef et al. (1986 ▶); El-Bahaie et al. (1990 ▶). For closely related compounds, see: Bertini et al. (1984 ▶); Gunasekaran et al. (2007 ▶).

Experimental

Crystal data

C22H21N3O6Se M = 502.38 Triclinic, a = 9.9530 (6) Å b = 10.5220 (6) Å c = 12.2305 (7) Å α = 79.350 (3)° β = 74.632 (3)° γ = 67.632 (3)° V = 1137.05 (11) Å3 Z = 2 Mo Kα radiation μ = 1.69 mm−1 T = 295 (2) K 0.23 × 0.17 × 0.16 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.697, T max = 0.773 30194 measured reflections 4477 independent reflections 3053 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.161 S = 1.04 4477 reflections 313 parameters 4 restraints H-atom parameters constrained Δρmax = 0.93 e Å−3 Δρmin = −0.80 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680800706X/is2278sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680800706X/is2278Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H21N3O6SeZ = 2
Mr = 502.38F000 = 512
Triclinic, P1Dx = 1.467 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 9.9530 (6) ÅCell parameters from 8446 reflections
b = 10.5220 (6) Åθ = 1.7–26º
c = 12.2305 (7) ŵ = 1.69 mm1
α = 79.350 (3)ºT = 295 (2) K
β = 74.632 (3)ºBlock, colourless
γ = 67.632 (3)º0.23 × 0.17 × 0.16 mm
V = 1137.05 (11) Å3
Bruker SMART APEX area-detector diffractometer4477 independent reflections
Radiation source: fine-focus sealed tube3053 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.028
T = 295(2) Kθmax = 26.1º
ω and φ scansθmin = 1.7º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.697, Tmax = 0.773k = −12→12
30194 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H-atom parameters constrained
wR(F2) = 0.161  w = 1/[σ2(Fo2) + (0.0776P)2 + 0.9842P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
4477 reflectionsΔρmax = 0.93 e Å3
313 parametersΔρmin = −0.80 e Å3
4 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/UeqOcc. (<1)
Se11.00900 (5)0.21345 (6)0.44996 (4)0.0888 (3)
O11.5749 (5)0.1019 (4)−0.0847 (4)0.1160 (15)
O21.6666 (5)0.0959 (5)0.0564 (5)0.1327 (17)
O40.7916 (3)0.6035 (4)0.4808 (2)0.0859 (10)
O61.0425 (4)0.6499 (3)0.1149 (2)0.0859 (10)
N10.8397 (5)0.1628 (5)0.5006 (4)0.0939 (13)
N20.7447 (4)0.2286 (4)0.4410 (3)0.0753 (10)
N31.5628 (6)0.1283 (4)0.0109 (5)0.0929 (14)
C10.7808 (4)0.3215 (4)0.3527 (3)0.0558 (9)
C20.9155 (4)0.3332 (4)0.3410 (3)0.0521 (8)
C30.6670 (4)0.4007 (4)0.2854 (3)0.0542 (9)
C40.5213 (5)0.4674 (5)0.3410 (4)0.0686 (11)
H40.49520.45630.42010.082*
C50.4156 (5)0.5494 (5)0.2804 (5)0.0807 (13)
H50.31930.59530.31870.097*
C60.4514 (6)0.5637 (5)0.1641 (5)0.0837 (14)
H60.38010.61980.12310.100*
C70.5930 (6)0.4949 (5)0.1085 (4)0.0796 (13)
H70.61680.50310.02930.095*
C80.7013 (5)0.4133 (5)0.1679 (3)0.0640 (10)
H80.79700.36710.12880.077*
C90.9818 (4)0.4288 (4)0.2556 (3)0.0495 (8)
H90.91990.46610.19870.059*
C101.1371 (4)0.3504 (4)0.1923 (3)0.0509 (8)
C111.1559 (5)0.3109 (4)0.0853 (3)0.0627 (10)
H111.07390.33460.05290.075*
C121.2940 (5)0.2375 (5)0.0274 (4)0.0738 (12)
H121.30630.2109−0.04410.089*
C131.4136 (5)0.2034 (4)0.0754 (4)0.0696 (12)
C141.4005 (5)0.2414 (4)0.1802 (4)0.0677 (11)
H141.48370.21820.21100.081*
C151.2595 (4)0.3154 (4)0.2393 (3)0.0592 (9)
H151.24770.34130.31090.071*
C160.9754 (4)0.5531 (4)0.3084 (3)0.0529 (9)
H161.04740.52050.35770.064*
C170.8230 (4)0.6224 (4)0.3794 (3)0.0574 (9)
O30.7304 (3)0.7037 (3)0.3154 (3)0.0766 (8)
C180.5803 (5)0.7789 (5)0.3722 (6)0.110 (2)
H18A0.56020.74130.45100.132*0.62 (3)
H18B0.50880.77320.33450.132*0.62 (3)
H18C0.58340.79120.44810.132*0.38 (3)
H18D0.52130.72100.38110.132*0.38 (3)
C190.571 (2)0.9256 (10)0.366 (2)0.150 (8)0.62 (3)
H19A0.62970.93170.41390.226*0.62 (3)
H19B0.46900.98300.39070.226*0.62 (3)
H19C0.60740.95610.28860.226*0.62 (3)
C19A0.500 (3)0.917 (2)0.318 (2)0.140 (12)0.38 (3)
H19D0.57040.95730.27110.209*0.38 (3)
H19E0.43600.97690.37600.209*0.38 (3)
H19F0.44070.90710.27170.209*0.38 (3)
C201.0180 (4)0.6576 (4)0.2149 (3)0.0580 (10)
O51.0258 (4)0.7581 (3)0.2602 (3)0.0796 (9)
C211.0583 (9)0.8667 (6)0.1809 (6)0.131 (3)
H21A1.00110.88950.12240.157*0.48 (3)
H21B1.16290.83460.14420.157*0.48 (3)
H21C1.06770.84800.10400.157*0.52 (3)
H21D1.15210.87050.18640.157*0.52 (3)
C221.022 (4)0.9937 (15)0.2377 (14)0.109 (8)0.48 (3)
H22A0.92621.01380.28800.164*0.48 (3)
H22B1.02211.07020.18100.164*0.48 (3)
H22C1.09610.97860.28060.164*0.48 (3)
C22A0.937 (2)1.0027 (12)0.205 (2)0.152 (8)0.52 (3)
H22D0.85331.01010.17650.228*0.52 (3)
H22E0.97271.07630.16940.228*0.52 (3)
H22F0.90721.00870.28620.228*0.52 (3)
U11U22U33U12U13U23
Se10.0812 (4)0.1012 (4)0.0863 (4)−0.0446 (3)−0.0377 (3)0.0424 (3)
O10.116 (3)0.095 (3)0.110 (3)−0.042 (2)0.047 (3)−0.035 (2)
O20.067 (2)0.126 (4)0.170 (5)−0.014 (2)0.018 (3)−0.035 (3)
O40.0721 (19)0.109 (2)0.0520 (17)−0.0186 (18)0.0079 (14)−0.0072 (16)
O60.125 (3)0.082 (2)0.0519 (18)−0.051 (2)−0.0073 (17)0.0087 (14)
N10.091 (3)0.103 (3)0.085 (3)−0.051 (2)−0.023 (2)0.041 (2)
N20.070 (2)0.082 (2)0.070 (2)−0.039 (2)−0.0106 (18)0.0203 (19)
N30.076 (3)0.067 (3)0.115 (4)−0.029 (2)0.025 (3)−0.014 (3)
C10.059 (2)0.060 (2)0.049 (2)−0.0287 (18)−0.0026 (16)−0.0018 (16)
C20.056 (2)0.054 (2)0.0456 (19)−0.0232 (17)−0.0087 (16)0.0014 (15)
C30.054 (2)0.058 (2)0.055 (2)−0.0286 (18)−0.0118 (17)0.0014 (17)
C40.061 (3)0.082 (3)0.066 (3)−0.033 (2)−0.004 (2)−0.011 (2)
C50.055 (3)0.082 (3)0.109 (4)−0.022 (2)−0.021 (3)−0.018 (3)
C60.080 (3)0.076 (3)0.108 (4)−0.035 (3)−0.047 (3)0.015 (3)
C70.087 (3)0.100 (3)0.068 (3)−0.052 (3)−0.032 (2)0.017 (2)
C80.060 (2)0.080 (3)0.059 (2)−0.037 (2)−0.0125 (19)0.002 (2)
C90.0473 (19)0.054 (2)0.0480 (19)−0.0215 (16)−0.0091 (15)0.0014 (15)
C100.052 (2)0.0492 (19)0.049 (2)−0.0221 (17)−0.0031 (16)−0.0016 (15)
C110.065 (2)0.071 (3)0.053 (2)−0.030 (2)−0.0024 (19)−0.0099 (19)
C120.083 (3)0.077 (3)0.061 (2)−0.038 (3)0.010 (2)−0.018 (2)
C130.064 (3)0.051 (2)0.080 (3)−0.025 (2)0.020 (2)−0.016 (2)
C140.053 (2)0.057 (2)0.087 (3)−0.0197 (19)−0.009 (2)0.000 (2)
C150.054 (2)0.057 (2)0.061 (2)−0.0173 (18)−0.0054 (18)−0.0079 (18)
C160.052 (2)0.051 (2)0.051 (2)−0.0203 (17)−0.0052 (16)0.0026 (16)
C170.054 (2)0.052 (2)0.061 (2)−0.0203 (18)−0.0008 (18)−0.0071 (18)
O30.0510 (16)0.0754 (19)0.0778 (19)−0.0092 (14)−0.0015 (14)0.0076 (15)
C180.054 (3)0.088 (4)0.148 (5)−0.004 (3)0.004 (3)0.003 (4)
C190.089 (11)0.096 (9)0.207 (18)0.014 (7)0.010 (11)−0.036 (9)
C19A0.083 (14)0.159 (19)0.119 (16)−0.017 (14)−0.001 (11)0.041 (13)
C200.050 (2)0.053 (2)0.060 (2)−0.0169 (17)−0.0017 (17)0.0025 (18)
O50.096 (2)0.0653 (18)0.0764 (19)−0.0450 (17)0.0138 (16)−0.0137 (15)
C210.165 (6)0.074 (4)0.132 (5)−0.070 (4)0.049 (5)−0.015 (3)
C220.134 (18)0.069 (8)0.116 (11)−0.042 (9)−0.006 (10)0.000 (7)
C22A0.168 (17)0.117 (12)0.181 (18)−0.080 (13)−0.056 (15)0.053 (11)
Se1—C21.836 (4)C14—H140.9300
Se1—N11.875 (4)C15—H150.9300
O1—N31.216 (6)C16—C171.510 (5)
O2—N31.208 (7)C16—C201.525 (5)
O4—C171.195 (5)C16—H160.9800
O6—C201.195 (5)C17—O31.315 (5)
N1—N21.260 (5)O3—C181.447 (5)
N2—C11.386 (5)C18—C191.4991 (10)
N3—C131.472 (6)C18—C19A1.4992 (10)
C1—C21.361 (5)C18—H18A0.9700
C1—C31.476 (5)C18—H18B0.9700
C2—C91.514 (5)C18—H18C0.9700
C3—C81.379 (5)C18—H18D0.9700
C3—C41.392 (5)C19—H19A0.9600
C4—C51.374 (6)C19—H19B0.9600
C4—H40.9300C19—H19C0.9600
C5—C61.366 (7)C19A—H19D0.9600
C5—H50.9300C19A—H19E0.9600
C6—C71.368 (7)C19A—H19F0.9600
C6—H60.9300C20—O51.316 (5)
C7—C81.380 (6)O5—C211.434 (6)
C7—H70.9300C21—C221.4989 (10)
C8—H80.9300C21—C22A1.4990 (10)
C9—C101.517 (5)C21—H21A0.9700
C9—C161.535 (5)C21—H21B0.9700
C9—H90.9800C21—H21C0.9700
C10—C151.378 (5)C21—H21D0.9700
C10—C111.391 (5)C22—H22A0.9600
C11—C121.366 (6)C22—H22B0.9600
C11—H110.9300C22—H22C0.9600
C12—C131.363 (7)C22A—H22D0.9600
C12—H120.9300C22A—H22E0.9600
C13—C141.371 (6)C22A—H22F0.9600
C14—C151.392 (5)
C2—Se1—N187.20 (17)C17—C16—C9111.8 (3)
N2—N1—Se1110.9 (3)C20—C16—C9110.1 (3)
N1—N2—C1117.2 (4)C17—C16—H16108.4
O2—N3—O1123.6 (5)C20—C16—H16108.4
O2—N3—C13117.9 (6)C9—C16—H16108.4
O1—N3—C13118.5 (6)O4—C17—O3124.9 (4)
C2—C1—N2115.9 (4)O4—C17—C16123.6 (4)
C2—C1—C3127.3 (3)O3—C17—C16111.5 (3)
N2—C1—C3116.7 (3)C17—O3—C18117.6 (4)
C1—C2—C9127.6 (3)O3—C18—C19106.1 (6)
C1—C2—Se1108.8 (3)O3—C18—C19A118.2 (9)
C9—C2—Se1123.7 (3)O3—C18—H18A110.5
C8—C3—C4118.5 (4)C19—C18—H18A110.5
C8—C3—C1121.9 (3)O3—C18—H18B110.5
C4—C3—C1119.6 (3)C19—C18—H18B110.5
C5—C4—C3120.7 (4)H18A—C18—H18B108.7
C5—C4—H4119.6O3—C18—H18C107.7
C3—C4—H4119.6C19A—C18—H18C107.7
C6—C5—C4120.2 (4)O3—C18—H18D107.7
C6—C5—H5119.9C19A—C18—H18D107.7
C4—C5—H5119.9H18C—C18—H18D107.1
C5—C6—C7119.5 (5)C18—C19—H19A109.5
C5—C6—H6120.3C18—C19—H19B109.5
C7—C6—H6120.3C18—C19—H19C109.5
C6—C7—C8121.1 (4)C18—C19A—H19D109.5
C6—C7—H7119.4C18—C19A—H19E109.5
C8—C7—H7119.4H19D—C19A—H19E109.5
C3—C8—C7119.8 (4)C18—C19A—H19F109.5
C3—C8—H8120.1H19D—C19A—H19F109.5
C7—C8—H8120.1H19E—C19A—H19F109.5
C2—C9—C10111.3 (3)O6—C20—O5124.2 (4)
C2—C9—C16112.8 (3)O6—C20—C16125.6 (4)
C10—C9—C16112.6 (3)O5—C20—C16110.2 (3)
C2—C9—H9106.5C20—O5—C21115.6 (4)
C10—C9—H9106.5O5—C21—C22112.0 (7)
C16—C9—H9106.5O5—C21—C22A110.3 (8)
C15—C10—C11119.3 (3)O5—C21—H21A109.2
C15—C10—C9121.5 (3)C22—C21—H21A109.2
C11—C10—C9119.1 (3)O5—C21—H21B109.2
C12—C11—C10120.4 (4)C22—C21—H21B109.2
C12—C11—H11119.8H21A—C21—H21B107.9
C10—C11—H11119.8O5—C21—H21C109.6
C13—C12—C11119.4 (4)C22A—C21—H21C109.6
C13—C12—H12120.3O5—C21—H21D109.6
C11—C12—H12120.3C22A—C21—H21D109.6
C12—C13—C14122.2 (4)H21C—C21—H21D108.1
C12—C13—N3119.1 (5)C21—C22—H22A109.5
C14—C13—N3118.7 (5)C21—C22—H22B109.5
C13—C14—C15118.3 (4)C21—C22—H22C109.5
C13—C14—H14120.9C21—C22A—H22D109.5
C15—C14—H14120.9C21—C22A—H22E109.5
C10—C15—C14120.4 (4)H22D—C22A—H22E109.5
C10—C15—H15119.8C21—C22A—H22F109.5
C14—C15—H15119.8H22D—C22A—H22F109.5
C17—C16—C20109.6 (3)H22E—C22A—H22F109.5
C2—Se1—N1—N20.3 (4)C10—C11—C12—C13−0.2 (6)
Se1—N1—N2—C10.3 (6)C11—C12—C13—C14−0.5 (6)
N1—N2—C1—C2−1.0 (6)C11—C12—C13—N3−178.0 (4)
N1—N2—C1—C3−178.4 (4)O2—N3—C13—C12−178.0 (5)
N2—C1—C2—C9−177.9 (4)O1—N3—C13—C121.8 (6)
C3—C1—C2—C9−0.8 (6)O2—N3—C13—C144.4 (6)
N2—C1—C2—Se11.1 (4)O1—N3—C13—C14−175.8 (4)
C3—C1—C2—Se1178.2 (3)C12—C13—C14—C150.9 (6)
N1—Se1—C2—C1−0.8 (3)N3—C13—C14—C15178.4 (4)
N1—Se1—C2—C9178.3 (3)C11—C10—C15—C140.1 (5)
C2—C1—C3—C850.7 (6)C9—C10—C15—C14178.9 (3)
N2—C1—C3—C8−132.2 (4)C13—C14—C15—C10−0.7 (6)
C2—C1—C3—C4−127.9 (4)C2—C9—C16—C17−48.0 (4)
N2—C1—C3—C449.2 (5)C10—C9—C16—C17−175.1 (3)
C8—C3—C4—C5−3.1 (6)C2—C9—C16—C20−170.0 (3)
C1—C3—C4—C5175.6 (4)C10—C9—C16—C2062.9 (4)
C3—C4—C5—C61.7 (7)C20—C16—C17—O4−138.2 (4)
C4—C5—C6—C70.5 (7)C9—C16—C17—O499.5 (5)
C5—C6—C7—C8−1.3 (7)C20—C16—C17—O342.6 (4)
C4—C3—C8—C72.3 (6)C9—C16—C17—O3−79.7 (4)
C1—C3—C8—C7−176.4 (4)O4—C17—O3—C181.7 (6)
C6—C7—C8—C3−0.1 (7)C16—C17—O3—C18−179.0 (4)
C1—C2—C9—C10−128.4 (4)C17—O3—C18—C19105.5 (15)
Se1—C2—C9—C1052.8 (4)C17—O3—C18—C19A149 (2)
C1—C2—C9—C16103.8 (4)C17—C16—C20—O6−118.3 (4)
Se1—C2—C9—C16−75.0 (4)C9—C16—C20—O65.1 (6)
C2—C9—C10—C15−81.3 (4)C17—C16—C20—O562.4 (4)
C16—C9—C10—C1546.6 (4)C9—C16—C20—O5−174.3 (3)
C2—C9—C10—C1197.5 (4)O6—C20—O5—C213.5 (7)
C16—C9—C10—C11−134.6 (3)C16—C20—O5—C21−177.2 (5)
C15—C10—C11—C120.3 (6)C20—O5—C21—C22163.5 (15)
C9—C10—C11—C12−178.5 (4)C20—O5—C21—C22A121.8 (17)
D—H···AD—HH···AD···AD—H···A
C22A—H22D···O2i0.962.473.38 (4)159
C11—H11···O6ii0.932.563.410 (6)152
C18—H18A···O40.972.292.686 (7)103
C21—H21C···O60.972.172.627 (6)107
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C22A—H22D⋯O2i0.962.473.38 (4)159
C11—H11⋯O6ii0.932.563.410 (6)152
C18—H18A⋯O40.972.292.686 (7)103
C21—H21C⋯O60.972.172.627 (6)107

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Synthesis and biological activity of some azoles and azines.

Authors:  S el-Bahaie; M G Assy; M M Hassanien
Journal:  Pharmazie       Date:  1990-10       Impact factor: 1.267

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  4-{(4-Chloro-phen-yl)[4-(4-methyl-phen-yl)-1,2,3-selenadiazol-5-yl]meth-yl}-4,5,6,7-tetra-hydro-1,2,3-benzoselenadiazole.

Authors:  J Muthukumaran; M Nishandhini; S Chitra; S Muthusubramanian; P Manisankar; Suman Bhattacharya; R Krishna; J Jeyakanthan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14

2.  3-(4-Methyl-phen-yl)-1-phenyl-3-(4,5,6,7-tetra-hydro-1,2,3-benzoselenadiazol-4-yl)propan-1-one.

Authors:  J Muthukumaran; M Nishandhini; S Chitra; P Manisankar; Suman Bhattacharya; S Muthusubramanian; R Krishna; J Jeyakanthan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18
  2 in total

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