Literature DB >> 21202042

Bis{2-[2-(isopropyl-ammonio)ethyl-imino-meth-yl]-6-methoxy-phenolato}nickel(II) dithio-cyanate.

Hong-Bo Ma, Yan-Xia Jiang, Jun-Tao Lei.   

Abstract

The title complex, [Ni(C(13)H(20)N(2)O(2))(2)](NCS)(2), consists of a centrosymmetric mononuclear four-coordinate nickel(II) complex cation and two thio-cyanate anions. The Ni atom is located on an inversion center and is coordinated by two phenol O atoms and two imine N atoms from two equivalent Schiff base ligands, in a square-planar geometry. In the crystal structure, the amino H atoms are involved in N-H⋯O hydrogen bonds with the phenol and meth-oxy O atoms of the ligand, and in N-H⋯N hydrogen bonds with the N atoms of the thio-cyanate anions, which sit above and below the Ni atom.

Entities:  

Year:  2008        PMID: 21202042      PMCID: PMC2960988          DOI: 10.1107/S1600536808008052

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the chemistry of Schiff base nickel(II) complexes, see: Marganian et al. (1995 ▶). For their biological activity, see: Harrop et al. (2003 ▶); Brückner et al. (2000 ▶); Ren et al. (2002 ▶). For thio­cyanate-coordinated complexes, see: Bogdanović et al. (2005 ▶); Schottenfeld et al. (2007 ▶); Abul-Haj et al. (2000 ▶). For related structures, see: Arıcı et al. (2005 ▶); Diao (2007 ▶); Diao et al. (2007 ▶); Zhu et al. (2004 ▶); Van Hecke et al. (2007 ▶); de Castro et al. (2001 ▶).

Experimental

Crystal data

[Ni(C13H20N2O2)2](NCS)2 M = 647.49 Orthorhombic, a = 13.520 (2) Å b = 9.810 (3) Å c = 24.102 (3) Å V = 3196.7 (12) Å3 Z = 4 Mo Kα radiation μ = 0.78 mm−1 T = 298 (2) K 0.23 × 0.22 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.841, T max = 0.860 24542 measured reflections 3863 independent reflections 1895 reflections with I > 2σ(I) R int = 0.110

Refinement

R[F 2 > 2σ(F 2)] = 0.070 wR(F 2) = 0.175 S = 1.01 3863 reflections 190 parameters 6 restraints H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.38 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808008052/su2049sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808008052/su2049Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C13H20N2O2)2](NCS)2Dx = 1.345 Mg m3
Mr = 647.49Mo Kα radiation λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 1440 reflections
a = 13.520 (2) Åθ = 2.3–24.6º
b = 9.810 (3) ŵ = 0.78 mm1
c = 24.102 (3) ÅT = 298 (2) K
V = 3196.7 (12) Å3Block, red
Z = 40.23 × 0.22 × 0.20 mm
F000 = 1368
Bruker SMART CCD area-detector diffractometer3863 independent reflections
Radiation source: fine-focus sealed tube1895 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.110
T = 298(2) Kθmax = 28.3º
ω scansθmin = 1.7º
Absorption correction: multi-scan(SADABS; Bruker, 2001)h = −17→17
Tmin = 0.841, Tmax = 0.860k = −12→12
24542 measured reflectionsl = −31→31
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.070H-atom parameters constrained
wR(F2) = 0.175  w = 1/[σ2(Fo2) + (0.0594P)2 + 2.0547P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
3863 reflectionsΔρmax = 0.29 e Å3
190 parametersΔρmin = −0.38 e Å3
6 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.50000.50000.0503 (3)
O10.0862 (2)0.5589 (3)0.55717 (11)0.0595 (8)
O20.1713 (2)0.7110 (3)0.62919 (13)0.0679 (9)
S10.12952 (16)0.8799 (3)0.34887 (10)0.1446 (9)
N10.1017 (2)0.3634 (3)0.47434 (13)0.0462 (8)
N20.0395 (3)0.4013 (3)0.35925 (13)0.0511 (9)
H2A0.07400.47430.37100.061*
H2B−0.01970.40340.37630.061*
N30.1018 (5)0.6596 (5)0.4145 (3)0.123 (2)
C10.1838 (3)0.5537 (4)0.55731 (16)0.0479 (10)
C20.2397 (3)0.4670 (4)0.52411 (17)0.0474 (10)
C30.3429 (3)0.4673 (5)0.5277 (2)0.0566 (12)
H30.37990.40860.50560.068*
C40.3893 (3)0.5529 (5)0.5634 (2)0.0659 (13)
H40.45810.55430.56480.079*
C50.3353 (3)0.6389 (5)0.59804 (19)0.0610 (13)
H50.36780.69670.62260.073*
C60.2337 (3)0.6377 (4)0.59571 (17)0.0523 (11)
C70.2135 (4)0.8054 (5)0.6670 (2)0.0850 (16)
H7A0.25300.75730.69370.127*
H7B0.16170.85400.68570.127*
H7C0.25440.86870.64710.127*
C80.1937 (3)0.3693 (4)0.48742 (15)0.0493 (11)
H80.23490.30400.47170.059*
C90.0744 (3)0.2481 (4)0.43785 (17)0.0553 (11)
H9A0.00500.22670.44330.066*
H9B0.11260.16860.44840.066*
C100.0920 (3)0.2777 (4)0.37715 (17)0.0560 (11)
H10A0.16230.28920.37070.067*
H10B0.06970.20090.35510.067*
C110.0231 (4)0.4150 (5)0.29841 (17)0.0681 (14)
H11−0.01020.33230.28530.082*
C120.1198 (4)0.4270 (7)0.2686 (2)0.119 (2)
H12A0.15590.50370.28290.178*
H12B0.10800.43970.22970.178*
H12C0.15770.34530.27410.178*
C13−0.0449 (5)0.5349 (6)0.2881 (2)0.0964 (19)
H13A−0.10830.51720.30450.145*
H13B−0.05260.54810.24890.145*
H13C−0.01690.61550.30430.145*
C140.1096 (5)0.7465 (7)0.3872 (3)0.095 (2)
U11U22U33U12U13U23
Ni10.0405 (4)0.0602 (5)0.0501 (4)0.0056 (4)−0.0042 (4)−0.0156 (4)
O10.0406 (17)0.084 (2)0.0535 (18)0.0023 (15)0.0001 (14)−0.0189 (16)
O20.066 (2)0.069 (2)0.068 (2)−0.0026 (17)−0.0098 (17)−0.0192 (18)
S10.1218 (16)0.166 (2)0.1462 (18)0.0331 (15)0.0288 (14)0.0599 (16)
N10.049 (2)0.049 (2)0.0408 (19)−0.0021 (17)0.0034 (16)0.0038 (16)
N20.057 (2)0.052 (2)0.045 (2)0.0072 (18)0.0093 (17)−0.0007 (17)
N30.162 (5)0.062 (3)0.147 (5)0.011 (3)−0.065 (4)0.008 (3)
C10.046 (3)0.053 (2)0.045 (2)−0.002 (2)−0.004 (2)0.008 (2)
C20.049 (3)0.050 (3)0.043 (2)0.004 (2)0.001 (2)0.0088 (19)
C30.042 (3)0.067 (3)0.060 (3)0.004 (2)0.002 (2)0.007 (2)
C40.045 (3)0.082 (3)0.071 (3)−0.003 (3)−0.006 (2)0.014 (3)
C50.061 (3)0.063 (3)0.059 (3)−0.015 (2)−0.016 (2)0.017 (2)
C60.052 (3)0.052 (3)0.053 (3)−0.003 (2)−0.005 (2)0.008 (2)
C70.107 (4)0.069 (3)0.079 (4)−0.008 (3)−0.023 (3)−0.013 (3)
C80.054 (3)0.056 (3)0.038 (2)0.011 (2)0.0101 (19)0.0086 (19)
C90.071 (3)0.045 (2)0.051 (3)0.004 (2)0.003 (2)−0.001 (2)
C100.070 (3)0.048 (3)0.050 (3)0.012 (2)0.000 (2)−0.004 (2)
C110.095 (4)0.065 (3)0.044 (3)0.010 (3)−0.001 (3)−0.001 (2)
C120.141 (6)0.157 (6)0.058 (4)0.035 (5)0.041 (4)0.028 (4)
C130.137 (5)0.080 (4)0.072 (4)0.032 (4)−0.025 (4)0.007 (3)
C140.095 (4)0.075 (4)0.116 (5)0.015 (4)−0.039 (4)−0.022 (4)
Ni1—O1i1.895 (3)C4—H40.9300
Ni1—O11.895 (3)C5—C61.374 (6)
Ni1—N1i2.017 (3)C5—H50.9300
Ni1—N12.017 (3)C7—H7A0.9600
O1—C11.320 (5)C7—H7B0.9600
O2—C61.371 (5)C7—H7C0.9600
O2—C71.418 (5)C8—H80.9300
S1—C141.624 (8)C9—C101.511 (5)
N1—C81.285 (5)C9—H9A0.9700
N1—C91.479 (5)C9—H9B0.9700
N2—C101.470 (5)C10—H10A0.9700
N2—C111.489 (5)C10—H10B0.9700
N2—H2A0.9000C11—C121.497 (7)
N2—H2B0.9000C11—C131.513 (7)
N3—C141.082 (7)C11—H110.9800
C1—C21.391 (6)C12—H12A0.9600
C1—C61.412 (5)C12—H12B0.9600
C2—C31.399 (6)C12—H12C0.9600
C2—C81.445 (6)C13—H13A0.9600
C3—C41.356 (6)C13—H13B0.9600
C3—H30.9300C13—H13C0.9600
C4—C51.393 (6)
O1i—Ni1—O1180.000 (1)O2—C7—H7C109.5
O1i—Ni1—N1i90.38 (13)H7A—C7—H7C109.5
O1—Ni1—N1i89.62 (13)H7B—C7—H7C109.5
O1i—Ni1—N189.62 (13)N1—C8—C2126.7 (4)
O1—Ni1—N190.38 (13)N1—C8—H8116.7
N1i—Ni1—N1180.00 (17)C2—C8—H8116.7
C1—O1—Ni1127.2 (3)N1—C9—C10112.9 (3)
C6—O2—C7118.2 (4)N1—C9—H9A109.0
C8—N1—C9115.0 (4)C10—C9—H9A109.0
C8—N1—Ni1123.7 (3)N1—C9—H9B109.0
C9—N1—Ni1121.4 (3)C10—C9—H9B109.0
C10—N2—C11115.8 (3)H9A—C9—H9B107.8
C10—N2—H2A108.3N2—C10—C9111.5 (3)
C11—N2—H2A108.3N2—C10—H10A109.3
C10—N2—H2B108.3C9—C10—H10A109.3
C11—N2—H2B108.3N2—C10—H10B109.3
H2A—N2—H2B107.4C9—C10—H10B109.3
O1—C1—C2124.4 (4)H10A—C10—H10B108.0
O1—C1—C6117.2 (4)N2—C11—C12110.4 (4)
C2—C1—C6118.3 (4)N2—C11—C13108.8 (4)
C1—C2—C3120.3 (4)C12—C11—C13113.0 (5)
C1—C2—C8121.6 (4)N2—C11—H11108.2
C3—C2—C8118.0 (4)C12—C11—H11108.2
C4—C3—C2120.2 (4)C13—C11—H11108.2
C4—C3—H3119.9C11—C12—H12A109.5
C2—C3—H3119.9C11—C12—H12B109.5
C3—C4—C5120.8 (4)H12A—C12—H12B109.5
C3—C4—H4119.6C11—C12—H12C109.5
C5—C4—H4119.6H12A—C12—H12C109.5
C6—C5—C4119.6 (4)H12B—C12—H12C109.5
C6—C5—H5120.2C11—C13—H13A109.5
C4—C5—H5120.2C11—C13—H13B109.5
O2—C6—C5125.9 (4)H13A—C13—H13B109.5
O2—C6—C1113.4 (4)C11—C13—H13C109.5
C5—C6—C1120.7 (4)H13A—C13—H13C109.5
O2—C7—H7A109.5H13B—C13—H13C109.5
O2—C7—H7B109.5N3—C14—S1175.4 (7)
H7A—C7—H7B109.5
D—H···AD—HH···AD···AD—H···A
N2—H2B···O2i0.902.343.068 (5)138
N2—H2B···O1i0.901.882.664 (4)145
N2—H2A···N30.902.132.983 (6)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O2i0.902.343.068 (5)138
N2—H2B⋯O1i0.901.882.664 (4)145
N2—H2A⋯N30.902.132.983 (6)158

Symmetry code: (i) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-pyrrolylthiones as monoanionic bidentate N,S-chelators: synthesis and molecular structure of 2-pyrrolylthionato complexes of nickel(II), cobalt(III), and mercury(II).

Authors:  C Brückner; S J Rettig; D Dolphin
Journal:  Inorg Chem       Date:  2000-12-25       Impact factor: 5.165

3.  Trans-[N,N'-Bis(salicydene)cyclohexane-1,2-diaminato]nickel(II)-chloroform (1/1).

Authors:  B de Castro; C Freire; M T Duarte; M F Minas Da Piedade; I C Santos
Journal:  Acta Crystallogr C       Date:  2001-04       Impact factor: 1.172

4.  Transition metal complexes with pyrazole-based ligands. XXII. Part XXI: Mészáros Szécsényi, Leovac, Kovacs, Pokol & Jaćimović (2005). Di-mu-thiocyanato-bis[(3,5-dimethyl-1H-pyrazole-1-carboxamidine-kappa2N,N')(thiocyanato-kappaN)copper(II)] and a redetermination of bis(3,5-dimethyl-1H-pyrazole-1-carboxamidine-kappa2N,N')bis(nitrato-kappaO)copper(II).

Authors:  Goran A Bogdanović; Zeljko K Jaćimović; Vukadin M Leovac
Journal:  Acta Crystallogr C       Date:  2005-07-09       Impact factor: 1.172

5.  Synthesis, biological evaluation, and quantitative structure-activity relationship analysis of new Schiff bases of hydroxysemicarbazide as potential antitumor agents.

Authors:  Shijun Ren; Rubin Wang; Kenichi Komatsu; Patricia Bonaz-Krause; Yegor Zyrianov; Charles E McKenna; Csaba Csipke; Zoltan A Tokes; Eric J Lien
Journal:  J Med Chem       Date:  2002-01-17       Impact factor: 7.446

6.  Diaquabis(4,5-dihydro-1,2,4-triazolo

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-08       Impact factor: 1.172

7.  Dioxygen activation by a dinuclear nickel thiolate complex: structural characterization of the ligand oxidized product.

Authors:  Todd C Harrop; Marilyn M Olmstead; Pradip K Mascharak
Journal:  Chem Commun (Camb)       Date:  2003-02-07       Impact factor: 6.222

  7 in total
  1 in total

1.  Bis{(E)-2-eth-oxy-6-[2-(ethyl-ammonio)ethyl-iminometh-yl]phenolato}nickel(II) bis(perchlorate).

Authors:  Xue-Wen Zhu; Xu-Zhao Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.