Literature DB >> 21201943

(S)-6-Methyl-∊-caprolactone.

Maxime A Siegler1, Huub Kooijman, Anthony L Spek.   

Abstract

The chiral title compound, C(7)H(12)O(2), a lactone derivative, features a seven-membered ring that adopts a chair conformation. The crystal structure is stabilized by weak C-H⋯O inter-actions occurring in the (100) plane. The absolute configuration was assigned on the basis of the enantioselective synthesis.

Entities:  

Year:  2008        PMID: 21201943      PMCID: PMC2960826          DOI: 10.1107/S1600536808004583

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: van As et al. (2005 ▶); van Buijtenen et al. (2006 ▶). For details of the synthesis, see: van As et al. (2007 ▶). For geometry, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C7H12O2 M = 128.17 Monoclinic, a = 6.757 (2) Å b = 7.577 (2) Å c = 7.586 (2) Å β = 110.949 (13)° V = 362.71 (17) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 150 (2) K 0.35 × 0.15 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 10010 measured reflections 889 independent reflections 862 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.072 S = 1.10 889 reflections 83 parameters 1 restraint H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.16 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: DENZO; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON and Mercury (Macrae et al., 2006 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808004583/tk2248sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004583/tk2248Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H12O2F000 = 140
Mr = 128.17Dx = 1.174 Mg m3
Monoclinic, P21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 7835 reflections
a = 6.757 (2) Åθ = 1.0–27.5º
b = 7.577 (2) ŵ = 0.08 mm1
c = 7.586 (2) ÅT = 150 (2) K
β = 110.949 (13)ºPrism, colourless
V = 362.71 (17) Å30.35 × 0.15 × 0.10 mm
Z = 2
Nonius KappaCCD diffractometer862 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.041
Monochromator: graphiteθmax = 27.5º
T = 150(2) Kθmin = 3.5º
φ and ω scansh = −8→8
Absorption correction: nonek = −9→9
10010 measured reflectionsl = −9→9
889 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.072  w = 1/[σ2(Fo2) + (0.0431P)2 + 0.0282P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
889 reflectionsΔρmax = 0.12 e Å3
83 parametersΔρmin = −0.16 e Å3
1 restraintExtinction correction: none
Primary atom site location: structure-invariant direct methodsAbsolute structure: known chirality of atom C6(S)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.03545 (16)0.06828 (15)−0.16671 (13)0.0355 (3)
O21.11573 (13)0.04935 (14)0.13758 (12)0.0288 (2)
C10.9754 (2)0.03155 (18)−0.03896 (16)0.0258 (3)
C20.7534 (2)−0.0285 (2)−0.07029 (18)0.0301 (3)
H2A0.7594−0.1422−0.00420.036*
H2B0.6778−0.0491−0.20690.036*
C30.6274 (2)0.1054 (2)0.0003 (2)0.0356 (3)
H3A0.66030.2261−0.03110.043*
H3B0.47400.0849−0.06690.043*
C40.6759 (2)0.0938 (2)0.2120 (2)0.0365 (3)
H4A0.6389−0.02600.24210.044*
H4B0.58410.17870.24610.044*
C50.9066 (2)0.1315 (2)0.33415 (18)0.0303 (3)
H5A0.94230.25280.30710.036*
H5B0.92050.12740.46850.036*
C61.06592 (19)0.00512 (19)0.30521 (16)0.0267 (3)
H61.0098−0.11810.29380.032*
C71.2785 (2)0.0148 (3)0.46522 (19)0.0403 (4)
H7A1.33330.13560.47590.060*
H7B1.3783−0.06600.43960.060*
H7C1.2615−0.01900.58370.060*
U11U22U33U12U13U23
O10.0442 (5)0.0406 (6)0.0260 (5)0.0001 (5)0.0177 (4)0.0018 (4)
O20.0248 (4)0.0400 (6)0.0219 (4)−0.0028 (4)0.0087 (3)0.0022 (4)
C10.0305 (6)0.0245 (6)0.0221 (6)0.0029 (5)0.0093 (5)−0.0007 (5)
C20.0272 (6)0.0341 (7)0.0255 (6)−0.0021 (5)0.0050 (5)−0.0041 (6)
C30.0242 (6)0.0431 (9)0.0365 (7)0.0058 (6)0.0074 (5)0.0002 (7)
C40.0298 (6)0.0451 (9)0.0382 (7)0.0031 (6)0.0166 (5)−0.0030 (7)
C50.0360 (7)0.0322 (7)0.0254 (6)−0.0015 (6)0.0143 (5)−0.0026 (5)
C60.0265 (6)0.0330 (7)0.0202 (6)−0.0027 (5)0.0079 (5)0.0028 (5)
C70.0311 (6)0.0598 (11)0.0252 (6)−0.0040 (7)0.0043 (5)0.0070 (7)
O1—C11.2095 (16)C4—H4A0.9900
O2—C11.3428 (15)C4—H4B0.9900
O2—C61.4659 (14)C5—C61.5140 (19)
C1—C21.5028 (18)C5—H5A0.9900
C2—C31.539 (2)C5—H5B0.9900
C2—H2A0.9900C6—C71.5152 (18)
C2—H2B0.9900C6—H61.0000
C3—C41.523 (2)C7—H7A0.9800
C3—H3A0.9900C7—H7B0.9800
C3—H3B0.9900C7—H7C0.9800
C4—C51.5288 (19)
C1—O2—C6122.88 (10)C5—C4—H4B108.6
O1—C1—O2117.15 (12)H4A—C4—H4B107.6
O1—C1—C2123.02 (11)C6—C5—C4114.69 (12)
O2—C1—C2119.82 (11)C6—C5—H5A108.6
C1—C2—C3112.99 (12)C4—C5—H5A108.6
C1—C2—H2A109.0C6—C5—H5B108.6
C3—C2—H2A109.0C4—C5—H5B108.6
C1—C2—H2B109.0H5A—C5—H5B107.6
C3—C2—H2B109.0O2—C6—C5112.13 (11)
H2A—C2—H2B107.8O2—C6—C7103.76 (10)
C4—C3—C2113.05 (12)C5—C6—C7111.89 (12)
C4—C3—H3A109.0O2—C6—H6109.6
C2—C3—H3A109.0C5—C6—H6109.6
C4—C3—H3B109.0C7—C6—H6109.6
C2—C3—H3B109.0C6—C7—H7A109.5
H3A—C3—H3B107.8C6—C7—H7B109.5
C3—C4—C5114.64 (11)H7A—C7—H7B109.5
C3—C4—H4A108.6C6—C7—H7C109.5
C5—C4—H4A108.6H7A—C7—H7C109.5
C3—C4—H4B108.6H7B—C7—H7C109.5
C6—O2—C1—O1−178.35 (12)C3—C4—C5—C6−61.49 (19)
C6—O2—C1—C22.78 (18)C1—O2—C6—C5−68.78 (16)
O1—C1—C2—C3−112.90 (16)C1—O2—C6—C7170.29 (13)
O2—C1—C2—C365.90 (16)C4—C5—C6—O280.45 (14)
C1—C2—C3—C4−81.25 (16)C4—C5—C6—C7−163.43 (12)
C2—C3—C4—C561.39 (19)
C—H···OC—HH···OC···OC—H···A
C2—H2A···O1i0.992.673.573 (2)152
C5—H5A···O1ii0.992.643.616 (2)166
C5—H5B···O1ii0.992.633.601 (2)168
C6—H6···O1i1.002.543.466 (2)154
Table 1

Short-contact C—H⋯O interactions (Å, °) found in the (100) plane

C—H⋯OC—HH⋯OC⋯OC—H⋯A
C2—H2A⋯O1i0.992.673.573 (2)152
C5—H5A⋯O1ii0.992.643.616 (2)166
C5—H5B⋯O1ii0.992.633.601 (2)168
C6—H6⋯O1i1.002.543.466 (2)154

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Chiral polymers by iterative tandem catalysis.

Authors:  Jeroen van Buijtenen; Bart A C van As; Jan Meuldijk; Anja R A Palmans; Jef A J M Vekemans; L A Hulshof; E W Meijer
Journal:  Chem Commun (Camb)       Date:  2006-06-21       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Chiral oligomers by iterative tandem catalysis.

Authors:  Bart A C van As; Jeroen van Buijtenen; Andreas Heise; Quirinus B Broxterman; Gerard K M Verzijl; Anja R A Palmans; E W Meijer
Journal:  J Am Chem Soc       Date:  2005-07-20       Impact factor: 15.419

  3 in total

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