| Literature DB >> 21201935 |
Khalijah Awang, Nor Hadiani Ismail, Rohaya Ahmad, Nor Hafizoh Saidan, Pascal Retailleau.
Abstract
The title compound, C(15)H(8)O(5), also known as nordamnacanthal, was isolated from the Malaysian Morinda citrifolia L. The 20 non-H atoms are coplanar. The structure is stabilized by intra-molecular O-H⋯O hydrogen bonds and inter-molecular O-H⋯O and C-H⋯O hydrogen bonds, forming bilayers of mol-ecular tapes with alternating stacking directions along the a axis.Entities:
Year: 2008 PMID: 21201935 PMCID: PMC2960756 DOI: 10.1107/S1600536808004169
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H8O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 10451 reflections |
| θ = 0.4–26.4º | |
| µ = 0.12 mm−1 | |
| β = 110.62 (4)º | Prism, orange |
| 0.60 × 0.39 × 0.14 mm | |
| Nonius KappaCCD diffractometer | 1554 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 26.4º |
| θmin = 2.1º | |
| φ and ω scans | |
| Absorption correction: none | |
| 14030 measured reflections | |
| 2298 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2296 reflections | Δρmax = 0.27 e Å−3 |
| 181 parameters | Δρmin = −0.20 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O4 | 0.32777 (16) | 1.4401 (3) | −0.05914 (8) | 0.0669 (5) | |
| O5 | 0.02849 (14) | 0.7077 (2) | −0.03142 (7) | 0.0531 (4) | |
| O1 | 0.22406 (15) | 0.5649 (2) | 0.07880 (7) | 0.0525 (4) | |
| H1 | 0.1487 | 0.5610 | 0.0479 | 0.063* | |
| O3 | 0.62014 (15) | 1.0321 (3) | 0.15870 (9) | 0.0746 (5) | |
| H3 | 0.6408 | 0.9283 | 0.1889 | 0.090* | |
| O2 | 0.58762 (18) | 0.6610 (3) | 0.22568 (9) | 0.0811 (6) | |
| C6 | 0.2604 (2) | 1.2727 (3) | −0.05264 (10) | 0.0437 (5) | |
| C7 | 0.12238 (19) | 1.2323 (3) | −0.10446 (9) | 0.0388 (5) | |
| C12 | 0.04523 (18) | 1.0390 (3) | −0.09796 (9) | 0.0364 (4) | |
| C13 | 0.09986 (19) | 0.8728 (3) | −0.03790 (10) | 0.0388 (5) | |
| C14 | 0.23549 (18) | 0.9106 (3) | 0.01290 (10) | 0.0377 (4) | |
| C5 | 0.31419 (18) | 1.1053 (3) | 0.00715 (10) | 0.0396 (5) | |
| C4 | 0.4429 (2) | 1.1451 (4) | 0.05601 (11) | 0.0493 (5) | |
| H4 | 0.4935 | 1.2742 | 0.0513 | 0.059* | |
| C3 | 0.4949 (2) | 0.9898 (4) | 0.11180 (11) | 0.0521 (6) | |
| C2 | 0.4211 (2) | 0.7925 (4) | 0.11979 (10) | 0.0461 (5) | |
| C1 | 0.2905 (2) | 0.7533 (3) | 0.06963 (10) | 0.0425 (5) | |
| C15 | 0.4762 (3) | 0.6333 (4) | 0.17886 (13) | 0.0652 (7) | |
| H15 | 0.4247 | 0.5031 | 0.1817 | 0.078* | |
| C11 | −0.0846 (2) | 1.0056 (4) | −0.14710 (10) | 0.0446 (5) | |
| H11 | −0.1359 | 0.8766 | −0.1430 | 0.054* | |
| C10 | −0.1371 (2) | 1.1638 (4) | −0.20178 (10) | 0.0509 (5) | |
| H10 | −0.2239 | 1.1414 | −0.2346 | 0.061* | |
| C9 | −0.0613 (2) | 1.3547 (4) | −0.20791 (11) | 0.0539 (6) | |
| H9 | −0.0975 | 1.4613 | −0.2447 | 0.065* | |
| C8 | 0.0679 (2) | 1.3894 (4) | −0.15996 (10) | 0.0486 (5) | |
| H8 | 0.1185 | 1.5183 | −0.1648 | 0.058* |
| O4 | 0.0621 (10) | 0.0626 (10) | 0.0708 (11) | −0.0288 (8) | 0.0169 (8) | 0.0066 (8) |
| O5 | 0.0512 (9) | 0.0466 (8) | 0.0591 (9) | −0.0150 (7) | 0.0163 (7) | 0.0068 (7) |
| O1 | 0.0511 (9) | 0.0471 (8) | 0.0565 (9) | −0.0020 (7) | 0.0155 (7) | 0.0087 (7) |
| O3 | 0.0437 (9) | 0.0866 (12) | 0.0726 (11) | −0.0075 (8) | −0.0056 (8) | −0.0060 (9) |
| O2 | 0.0657 (11) | 0.0934 (13) | 0.0606 (11) | 0.0183 (10) | −0.0071 (9) | 0.0054 (9) |
| C6 | 0.0458 (11) | 0.0411 (11) | 0.0474 (11) | −0.0107 (9) | 0.0201 (9) | −0.0052 (9) |
| C7 | 0.0434 (11) | 0.0367 (10) | 0.0381 (10) | −0.0049 (8) | 0.0167 (9) | −0.0044 (8) |
| C12 | 0.0367 (10) | 0.0360 (10) | 0.0374 (10) | −0.0028 (8) | 0.0142 (8) | −0.0048 (8) |
| C13 | 0.0419 (11) | 0.0355 (10) | 0.0421 (11) | −0.0054 (8) | 0.0187 (9) | −0.0036 (8) |
| C14 | 0.0370 (10) | 0.0388 (10) | 0.0378 (10) | 0.0018 (8) | 0.0138 (8) | −0.0027 (8) |
| C5 | 0.0359 (10) | 0.0413 (10) | 0.0426 (11) | −0.0048 (8) | 0.0152 (8) | −0.0075 (8) |
| C4 | 0.0450 (12) | 0.0496 (12) | 0.0536 (13) | −0.0085 (9) | 0.0176 (10) | −0.0075 (10) |
| C3 | 0.0386 (11) | 0.0605 (13) | 0.0511 (13) | 0.0012 (10) | 0.0081 (10) | −0.0113 (11) |
| C2 | 0.0427 (11) | 0.0504 (12) | 0.0423 (11) | 0.0075 (9) | 0.0112 (9) | −0.0026 (9) |
| C1 | 0.0432 (11) | 0.0404 (11) | 0.0474 (11) | 0.0016 (8) | 0.0202 (9) | −0.0033 (8) |
| C15 | 0.0664 (15) | 0.0655 (15) | 0.0561 (14) | 0.0136 (12) | 0.0122 (12) | 0.0028 (12) |
| C11 | 0.0413 (11) | 0.0467 (11) | 0.0457 (11) | −0.0068 (9) | 0.0149 (9) | −0.0065 (9) |
| C10 | 0.0433 (11) | 0.0603 (13) | 0.0430 (11) | 0.0026 (10) | 0.0075 (9) | −0.0059 (10) |
| C9 | 0.0634 (14) | 0.0528 (13) | 0.0422 (12) | 0.0073 (11) | 0.0146 (11) | 0.0072 (9) |
| C8 | 0.0578 (13) | 0.0430 (11) | 0.0471 (12) | −0.0066 (9) | 0.0209 (11) | 0.0014 (9) |
| O4—C6 | 1.220 (2) | C14—C5 | 1.410 (3) |
| O5—C13 | 1.237 (2) | C5—C4 | 1.388 (3) |
| O1—C1 | 1.326 (2) | C4—C3 | 1.383 (3) |
| O1—H1 | 0.8200 | C4—H4 | 0.9300 |
| O3—C3 | 1.349 (3) | C3—C2 | 1.404 (3) |
| O3—H3 | 0.8200 | C2—C1 | 1.411 (3) |
| O2—C15 | 1.233 (3) | C2—C15 | 1.446 (3) |
| C6—C7 | 1.482 (3) | C15—H15 | 0.9300 |
| C6—C5 | 1.484 (3) | C11—C10 | 1.380 (3) |
| C7—C8 | 1.389 (3) | C11—H11 | 0.9300 |
| C7—C12 | 1.399 (2) | C10—C9 | 1.377 (3) |
| C12—C11 | 1.393 (3) | C10—H10 | 0.9300 |
| C12—C13 | 1.484 (3) | C9—C8 | 1.380 (3) |
| C13—C14 | 1.454 (3) | C9—H9 | 0.9300 |
| C14—C1 | 1.407 (3) | C8—H8 | 0.9300 |
| C1—O1—H1 | 109.5 | O3—C3—C2 | 120.4 (2) |
| C3—O3—H3 | 109.5 | C4—C3—C2 | 121.61 (18) |
| O4—C6—C7 | 120.56 (18) | C3—C2—C1 | 118.88 (18) |
| O4—C6—C5 | 121.01 (18) | C3—C2—C15 | 121.0 (2) |
| C7—C6—C5 | 118.43 (16) | C1—C2—C15 | 120.1 (2) |
| C8—C7—C12 | 119.32 (18) | O1—C1—C14 | 122.54 (18) |
| C8—C7—C6 | 119.77 (17) | O1—C1—C2 | 117.17 (18) |
| C12—C7—C6 | 120.91 (17) | C14—C1—C2 | 120.29 (18) |
| C11—C12—C7 | 119.84 (17) | O2—C15—C2 | 123.5 (3) |
| C11—C12—C13 | 119.92 (16) | O2—C15—H15 | 118.2 |
| C7—C12—C13 | 120.23 (16) | C2—C15—H15 | 118.2 |
| O5—C13—C14 | 121.38 (17) | C10—C11—C12 | 120.01 (19) |
| O5—C13—C12 | 119.46 (17) | C10—C11—H11 | 120.0 |
| C14—C13—C12 | 119.15 (16) | C12—C11—H11 | 120.0 |
| C1—C14—C5 | 118.53 (17) | C9—C10—C11 | 120.08 (19) |
| C1—C14—C13 | 120.26 (17) | C9—C10—H10 | 120.0 |
| C5—C14—C13 | 121.21 (17) | C11—C10—H10 | 120.0 |
| C4—C5—C14 | 121.66 (18) | C10—C9—C8 | 120.6 (2) |
| C4—C5—C6 | 118.30 (17) | C10—C9—H9 | 119.7 |
| C14—C5—C6 | 120.04 (17) | C8—C9—H9 | 119.7 |
| C3—C4—C5 | 119.03 (19) | C9—C8—C7 | 120.12 (19) |
| C3—C4—H4 | 120.5 | C9—C8—H8 | 119.9 |
| C5—C4—H4 | 120.5 | C7—C8—H8 | 119.9 |
| O3—C3—C4 | 118.0 (2) | ||
| O4—C6—C7—C8 | −1.6 (3) | C6—C5—C4—C3 | −179.58 (18) |
| C5—C6—C7—C8 | 178.31 (17) | C5—C4—C3—O3 | −179.91 (17) |
| O4—C6—C7—C12 | 179.08 (18) | C5—C4—C3—C2 | 0.5 (3) |
| C5—C6—C7—C12 | −1.0 (3) | O3—C3—C2—C1 | −179.82 (18) |
| C8—C7—C12—C11 | 0.3 (3) | C4—C3—C2—C1 | −0.3 (3) |
| C6—C7—C12—C11 | 179.58 (17) | O3—C3—C2—C15 | 1.2 (3) |
| C8—C7—C12—C13 | −178.19 (17) | C4—C3—C2—C15 | −179.25 (19) |
| C6—C7—C12—C13 | 1.1 (3) | C5—C14—C1—O1 | −179.51 (17) |
| C11—C12—C13—O5 | −1.1 (3) | C13—C14—C1—O1 | 1.1 (3) |
| C7—C12—C13—O5 | 177.34 (17) | C5—C14—C1—C2 | 0.7 (3) |
| C11—C12—C13—C14 | −179.93 (16) | C13—C14—C1—C2 | −178.70 (17) |
| C7—C12—C13—C14 | −1.5 (3) | C3—C2—C1—O1 | 179.83 (17) |
| O5—C13—C14—C1 | 2.3 (3) | C15—C2—C1—O1 | −1.2 (3) |
| C12—C13—C14—C1 | −178.89 (16) | C3—C2—C1—C14 | −0.3 (3) |
| O5—C13—C14—C5 | −177.04 (18) | C15—C2—C1—C14 | 178.65 (18) |
| C12—C13—C14—C5 | 1.8 (3) | C3—C2—C15—O2 | 1.2 (4) |
| C1—C14—C5—C4 | −0.4 (3) | C1—C2—C15—O2 | −177.7 (2) |
| C13—C14—C5—C4 | 178.95 (17) | C7—C12—C11—C10 | −0.4 (3) |
| C1—C14—C5—C6 | 178.98 (16) | C13—C12—C11—C10 | 178.07 (17) |
| C13—C14—C5—C6 | −1.7 (3) | C12—C11—C10—C9 | 0.0 (3) |
| O4—C6—C5—C4 | 0.6 (3) | C11—C10—C9—C8 | 0.4 (3) |
| C7—C6—C5—C4 | −179.34 (17) | C10—C9—C8—C7 | −0.5 (3) |
| O4—C6—C5—C14 | −178.84 (19) | C12—C7—C8—C9 | 0.2 (3) |
| C7—C6—C5—C14 | 1.3 (3) | C6—C7—C8—C9 | −179.14 (18) |
| C14—C5—C4—C3 | −0.2 (3) |
| H··· | ||||
| O3—H3···O2 | 0.82 | 1.86 | 2.590 (3) | 148 |
| O1—H1···O5 | 0.82 | 1.86 | 2.577 (2) | 146 |
| O1—H1···O5i | 0.82 | 2.34 | 2.933 (2) | 130 |
| C4—H4···O4ii | 0.93 | 2.45 | 3.358 (2) | 166 |
| C10—H10···O2iii | 0.93 | 2.53 | 3.312 (3) | 142 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O2 | 0.82 | 1.86 | 2.590 (3) | 148 |
| O1—H1⋯O5 | 0.82 | 1.86 | 2.577 (2) | 146 |
| O1—H1⋯O5i | 0.82 | 2.34 | 2.933 (2) | 130 |
| C4—H4⋯O4ii | 0.93 | 2.45 | 3.358 (2) | 166 |
| C10—H10⋯O2iii | 0.93 | 2.53 | 3.312 (3) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) .