Literature DB >> 21201935

1,3-Dihydr-oxy-9,10-dioxo-9,10-di-hydro-anthracene-2-carbaldehyde.

Khalijah Awang, Nor Hadiani Ismail, Rohaya Ahmad, Nor Hafizoh Saidan, Pascal Retailleau.   

Abstract

The title compound, C(15)H(8)O(5), also known as nordamnacanthal, was isolated from the Malaysian Morinda citrifolia L. The 20 non-H atoms are coplanar. The structure is stabilized by intra-molecular O-H⋯O hydrogen bonds and inter-molecular O-H⋯O and C-H⋯O hydrogen bonds, forming bilayers of mol-ecular tapes with alternating stacking directions along the a axis.

Entities:  

Year:  2008        PMID: 21201935      PMCID: PMC2960756          DOI: 10.1107/S1600536808004169

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Chan-Blanco et al. (2006 ▶); Ismail (1998 ▶); Ohsawa & Ohba (1993 ▶); Singh et al. (1984 ▶); Whistler (1985 ▶); Wijnsma & Verpoorte (1986 ▶); Zhu et al. (2008 ▶).

Experimental

Crystal data

C15H8O5 M = 268.21 Monoclinic, a = 10.547 (2) Å b = 5.669 (1) Å c = 20.231 (3) Å β = 110.62 (4)° V = 1132.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 (2) K 0.60 × 0.39 × 0.14 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 14030 measured reflections 2298 independent reflections 1554 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.150 S = 1.06 2296 reflections 181 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.20 e Å−3 Data collection: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT (Nonius, 1999 ▶); cell refinement: DENZO and COLLECT; data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808004169/bg2162sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004169/bg2162Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H8O5F000 = 552
Mr = 268.21Dx = 1.574 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 10451 reflections
a = 10.547 (2) Åθ = 0.4–26.4º
b = 5.669 (1) ŵ = 0.12 mm1
c = 20.231 (3) ÅT = 293 (2) K
β = 110.62 (4)ºPrism, orange
V = 1132.1 (5) Å30.60 × 0.39 × 0.14 mm
Z = 4
Nonius KappaCCD diffractometer1554 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
Monochromator: graphiteθmax = 26.4º
T = 293(2) Kθmin = 2.1º
φ and ω scansh = 0→13
Absorption correction: nonek = −7→0
14030 measured reflectionsl = −25→22
2298 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051H-atom parameters constrained
wR(F2) = 0.150  w = 1/[σ2(Fo2) + (0.0705P)2 + 0.3487P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2296 reflectionsΔρmax = 0.27 e Å3
181 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections (2298) except two reflections with Delta(F2)/e.s.d. greater than 9 (2296). The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.32777 (16)1.4401 (3)−0.05914 (8)0.0669 (5)
O50.02849 (14)0.7077 (2)−0.03142 (7)0.0531 (4)
O10.22406 (15)0.5649 (2)0.07880 (7)0.0525 (4)
H10.14870.56100.04790.063*
O30.62014 (15)1.0321 (3)0.15870 (9)0.0746 (5)
H30.64080.92830.18890.090*
O20.58762 (18)0.6610 (3)0.22568 (9)0.0811 (6)
C60.2604 (2)1.2727 (3)−0.05264 (10)0.0437 (5)
C70.12238 (19)1.2323 (3)−0.10446 (9)0.0388 (5)
C120.04523 (18)1.0390 (3)−0.09796 (9)0.0364 (4)
C130.09986 (19)0.8728 (3)−0.03790 (10)0.0388 (5)
C140.23549 (18)0.9106 (3)0.01290 (10)0.0377 (4)
C50.31419 (18)1.1053 (3)0.00715 (10)0.0396 (5)
C40.4429 (2)1.1451 (4)0.05601 (11)0.0493 (5)
H40.49351.27420.05130.059*
C30.4949 (2)0.9898 (4)0.11180 (11)0.0521 (6)
C20.4211 (2)0.7925 (4)0.11979 (10)0.0461 (5)
C10.2905 (2)0.7533 (3)0.06963 (10)0.0425 (5)
C150.4762 (3)0.6333 (4)0.17886 (13)0.0652 (7)
H150.42470.50310.18170.078*
C11−0.0846 (2)1.0056 (4)−0.14710 (10)0.0446 (5)
H11−0.13590.8766−0.14300.054*
C10−0.1371 (2)1.1638 (4)−0.20178 (10)0.0509 (5)
H10−0.22391.1414−0.23460.061*
C9−0.0613 (2)1.3547 (4)−0.20791 (11)0.0539 (6)
H9−0.09751.4613−0.24470.065*
C80.0679 (2)1.3894 (4)−0.15996 (10)0.0486 (5)
H80.11851.5183−0.16480.058*
U11U22U33U12U13U23
O40.0621 (10)0.0626 (10)0.0708 (11)−0.0288 (8)0.0169 (8)0.0066 (8)
O50.0512 (9)0.0466 (8)0.0591 (9)−0.0150 (7)0.0163 (7)0.0068 (7)
O10.0511 (9)0.0471 (8)0.0565 (9)−0.0020 (7)0.0155 (7)0.0087 (7)
O30.0437 (9)0.0866 (12)0.0726 (11)−0.0075 (8)−0.0056 (8)−0.0060 (9)
O20.0657 (11)0.0934 (13)0.0606 (11)0.0183 (10)−0.0071 (9)0.0054 (9)
C60.0458 (11)0.0411 (11)0.0474 (11)−0.0107 (9)0.0201 (9)−0.0052 (9)
C70.0434 (11)0.0367 (10)0.0381 (10)−0.0049 (8)0.0167 (9)−0.0044 (8)
C120.0367 (10)0.0360 (10)0.0374 (10)−0.0028 (8)0.0142 (8)−0.0048 (8)
C130.0419 (11)0.0355 (10)0.0421 (11)−0.0054 (8)0.0187 (9)−0.0036 (8)
C140.0370 (10)0.0388 (10)0.0378 (10)0.0018 (8)0.0138 (8)−0.0027 (8)
C50.0359 (10)0.0413 (10)0.0426 (11)−0.0048 (8)0.0152 (8)−0.0075 (8)
C40.0450 (12)0.0496 (12)0.0536 (13)−0.0085 (9)0.0176 (10)−0.0075 (10)
C30.0386 (11)0.0605 (13)0.0511 (13)0.0012 (10)0.0081 (10)−0.0113 (11)
C20.0427 (11)0.0504 (12)0.0423 (11)0.0075 (9)0.0112 (9)−0.0026 (9)
C10.0432 (11)0.0404 (11)0.0474 (11)0.0016 (8)0.0202 (9)−0.0033 (8)
C150.0664 (15)0.0655 (15)0.0561 (14)0.0136 (12)0.0122 (12)0.0028 (12)
C110.0413 (11)0.0467 (11)0.0457 (11)−0.0068 (9)0.0149 (9)−0.0065 (9)
C100.0433 (11)0.0603 (13)0.0430 (11)0.0026 (10)0.0075 (9)−0.0059 (10)
C90.0634 (14)0.0528 (13)0.0422 (12)0.0073 (11)0.0146 (11)0.0072 (9)
C80.0578 (13)0.0430 (11)0.0471 (12)−0.0066 (9)0.0209 (11)0.0014 (9)
O4—C61.220 (2)C14—C51.410 (3)
O5—C131.237 (2)C5—C41.388 (3)
O1—C11.326 (2)C4—C31.383 (3)
O1—H10.8200C4—H40.9300
O3—C31.349 (3)C3—C21.404 (3)
O3—H30.8200C2—C11.411 (3)
O2—C151.233 (3)C2—C151.446 (3)
C6—C71.482 (3)C15—H150.9300
C6—C51.484 (3)C11—C101.380 (3)
C7—C81.389 (3)C11—H110.9300
C7—C121.399 (2)C10—C91.377 (3)
C12—C111.393 (3)C10—H100.9300
C12—C131.484 (3)C9—C81.380 (3)
C13—C141.454 (3)C9—H90.9300
C14—C11.407 (3)C8—H80.9300
C1—O1—H1109.5O3—C3—C2120.4 (2)
C3—O3—H3109.5C4—C3—C2121.61 (18)
O4—C6—C7120.56 (18)C3—C2—C1118.88 (18)
O4—C6—C5121.01 (18)C3—C2—C15121.0 (2)
C7—C6—C5118.43 (16)C1—C2—C15120.1 (2)
C8—C7—C12119.32 (18)O1—C1—C14122.54 (18)
C8—C7—C6119.77 (17)O1—C1—C2117.17 (18)
C12—C7—C6120.91 (17)C14—C1—C2120.29 (18)
C11—C12—C7119.84 (17)O2—C15—C2123.5 (3)
C11—C12—C13119.92 (16)O2—C15—H15118.2
C7—C12—C13120.23 (16)C2—C15—H15118.2
O5—C13—C14121.38 (17)C10—C11—C12120.01 (19)
O5—C13—C12119.46 (17)C10—C11—H11120.0
C14—C13—C12119.15 (16)C12—C11—H11120.0
C1—C14—C5118.53 (17)C9—C10—C11120.08 (19)
C1—C14—C13120.26 (17)C9—C10—H10120.0
C5—C14—C13121.21 (17)C11—C10—H10120.0
C4—C5—C14121.66 (18)C10—C9—C8120.6 (2)
C4—C5—C6118.30 (17)C10—C9—H9119.7
C14—C5—C6120.04 (17)C8—C9—H9119.7
C3—C4—C5119.03 (19)C9—C8—C7120.12 (19)
C3—C4—H4120.5C9—C8—H8119.9
C5—C4—H4120.5C7—C8—H8119.9
O3—C3—C4118.0 (2)
O4—C6—C7—C8−1.6 (3)C6—C5—C4—C3−179.58 (18)
C5—C6—C7—C8178.31 (17)C5—C4—C3—O3−179.91 (17)
O4—C6—C7—C12179.08 (18)C5—C4—C3—C20.5 (3)
C5—C6—C7—C12−1.0 (3)O3—C3—C2—C1−179.82 (18)
C8—C7—C12—C110.3 (3)C4—C3—C2—C1−0.3 (3)
C6—C7—C12—C11179.58 (17)O3—C3—C2—C151.2 (3)
C8—C7—C12—C13−178.19 (17)C4—C3—C2—C15−179.25 (19)
C6—C7—C12—C131.1 (3)C5—C14—C1—O1−179.51 (17)
C11—C12—C13—O5−1.1 (3)C13—C14—C1—O11.1 (3)
C7—C12—C13—O5177.34 (17)C5—C14—C1—C20.7 (3)
C11—C12—C13—C14−179.93 (16)C13—C14—C1—C2−178.70 (17)
C7—C12—C13—C14−1.5 (3)C3—C2—C1—O1179.83 (17)
O5—C13—C14—C12.3 (3)C15—C2—C1—O1−1.2 (3)
C12—C13—C14—C1−178.89 (16)C3—C2—C1—C14−0.3 (3)
O5—C13—C14—C5−177.04 (18)C15—C2—C1—C14178.65 (18)
C12—C13—C14—C51.8 (3)C3—C2—C15—O21.2 (4)
C1—C14—C5—C4−0.4 (3)C1—C2—C15—O2−177.7 (2)
C13—C14—C5—C4178.95 (17)C7—C12—C11—C10−0.4 (3)
C1—C14—C5—C6178.98 (16)C13—C12—C11—C10178.07 (17)
C13—C14—C5—C6−1.7 (3)C12—C11—C10—C90.0 (3)
O4—C6—C5—C40.6 (3)C11—C10—C9—C80.4 (3)
C7—C6—C5—C4−179.34 (17)C10—C9—C8—C7−0.5 (3)
O4—C6—C5—C14−178.84 (19)C12—C7—C8—C90.2 (3)
C7—C6—C5—C141.3 (3)C6—C7—C8—C9−179.14 (18)
C14—C5—C4—C3−0.2 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.821.862.590 (3)148
O1—H1···O50.821.862.577 (2)146
O1—H1···O5i0.822.342.933 (2)130
C4—H4···O4ii0.932.453.358 (2)166
C10—H10···O2iii0.932.533.312 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.821.862.590 (3)148
O1—H1⋯O50.821.862.577 (2)146
O1—H1⋯O5i0.822.342.933 (2)130
C4—H4⋯O4ii0.932.453.358 (2)166
C10—H10⋯O2iii0.932.533.312 (3)142

Symmetry codes: (i) ; (ii) ; (iii) .

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