Literature DB >> 21201403

2-Hydr-oxy-1,6,7,8-tetra-meth-oxy-3-methyl-anthraquinone.

Li-Cai Zhu1, Zhen-Gang Zhao, Shu-Juan Yu.   

Abstract

The title compound, C(19)H(18)O(7), also known as chrysoobtusin, was isolated from Cassia tora L. (Leguminosae). The anthraquinone ring system is almost planar, the dihedral angle between the two benzene rings being 4.27 (4)°. The structure is stabilized by intra- and inter-molecular O-H⋯O and C-H⋯O hydrogen bonds, and by weak π-π stacking inter-actions along the b axis, with a centroid-centroid distance between related benzene rings of 3.800 (4) Å.

Entities:  

Year:  2008        PMID: 21201403      PMCID: PMC2960471          DOI: 10.1107/S1600536807067864

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Boonnak et al. (2005 ▶); Hao et al. (1995 ▶); Jia et al. (2007 ▶); Ng et al. (2005 ▶); Patil et al. (2004 ▶); Wu & Yen (2004 ▶); Allen et al. (1987 ▶).

Experimental

Crystal data

C19H18O7 M = 358.33 Monoclinic, a = 12.2960 (3) Å b = 7.8545 (2) Å c = 18.3361 (5) Å β = 106.581 (2)° V = 1697.24 (8) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 (2) K 0.30 × 0.28 × 0.26 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: none 13295 measured reflections 3871 independent reflections 2527 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.133 S = 1.02 3871 reflections 241 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 2004 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807067864/rz2185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807067864/rz2185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18O7F000 = 752
Mr = 358.33Dx = 1.402 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3645 reflections
a = 12.2960 (3) Åθ = 1.4–28.0º
b = 7.8545 (2) ŵ = 0.11 mm1
c = 18.3361 (5) ÅT = 296 (2) K
β = 106.581 (2)ºBlock, yellow
V = 1697.24 (8) Å30.30 × 0.28 × 0.26 mm
Z = 4
Bruker APEXII area-detector diffractometer2527 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.032
Monochromator: graphiteθmax = 27.5º
T = 296(2) Kθmin = 1.8º
f and ω scansh = −15→15
Absorption correction: nonek = −10→10
13295 measured reflectionsl = −23→23
3871 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.133  w = 1/[σ2(Fo2) + (0.0598P)2 + 0.2883P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3871 reflectionsΔρmax = 0.19 e Å3
241 parametersΔρmin = −0.21 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.12772 (16)0.3847 (2)−0.08053 (10)0.0478 (4)
C20.23670 (15)0.3514 (2)−0.03234 (10)0.0479 (4)
C30.25066 (14)0.2624 (2)0.03525 (9)0.0417 (4)
C40.15663 (13)0.2073 (2)0.05800 (9)0.0391 (4)
C50.04861 (13)0.2443 (2)0.00932 (9)0.0394 (4)
C60.03506 (15)0.3313 (2)−0.05891 (9)0.0452 (4)
H6−0.03760.3536−0.09020.054*
C7−0.05610 (14)0.1888 (2)0.02762 (9)0.0419 (4)
C8−0.04420 (13)0.10489 (19)0.10100 (9)0.0391 (4)
C90.06335 (13)0.07377 (19)0.15239 (9)0.0385 (4)
C100.16909 (14)0.1101 (2)0.12996 (9)0.0420 (4)
C110.06680 (13)−0.0001 (2)0.22235 (9)0.0404 (4)
C12−0.03346 (14)−0.0496 (2)0.23820 (9)0.0447 (4)
C13−0.14001 (14)−0.0222 (2)0.18680 (9)0.0459 (4)
C14−0.14247 (14)0.0570 (2)0.11918 (9)0.0444 (4)
H14−0.21240.07930.08440.053*
C150.01444 (17)0.4980 (3)−0.19883 (11)0.0645 (5)
H15A−0.02230.3913−0.21570.097*
H15B0.02360.5600−0.24180.097*
H15C−0.03110.5634−0.17440.097*
C160.3571 (2)0.5740 (3)−0.04686 (16)0.0795 (7)
H16A0.29510.6370−0.07940.119*
H16B0.42460.5946−0.06190.119*
H16C0.36900.60980.00490.119*
C170.41092 (17)0.0855 (3)0.06199 (13)0.0682 (6)
H17A0.3652−0.01080.06660.102*
H17B0.48550.07290.09670.102*
H17C0.41630.09200.01090.102*
C180.21311 (19)0.1135 (3)0.32189 (12)0.0727 (6)
H18A0.24430.18580.29070.109*
H18B0.27230.07900.36600.109*
H18C0.15590.17450.33750.109*
C19−0.24641 (16)−0.0758 (3)0.20556 (12)0.0666 (6)
H19A−0.3114−0.03110.16800.100*
H19B−0.2450−0.03270.25480.100*
H19C−0.2507−0.19780.20580.100*
O10.12327 (11)0.46722 (18)−0.14620 (7)0.0641 (4)
O20.33123 (11)0.39758 (17)−0.05315 (8)0.0617 (4)
O30.36000 (9)0.23760 (15)0.07962 (6)0.0495 (3)
O40.26068 (10)0.05769 (19)0.16791 (7)0.0642 (4)
O5−0.14949 (10)0.21417 (18)−0.01744 (7)0.0581 (4)
O60.16389 (10)−0.03329 (16)0.27947 (6)0.0510 (3)
O7−0.02886 (10)−0.12633 (19)0.30522 (7)0.0599 (4)
H70.0376−0.14340.32910.090*
U11U22U33U12U13U23
C10.0551 (11)0.0446 (9)0.0446 (9)0.0084 (8)0.0161 (8)0.0035 (8)
C20.0478 (10)0.0460 (9)0.0522 (10)0.0032 (8)0.0180 (8)−0.0028 (8)
C30.0395 (9)0.0421 (9)0.0407 (9)0.0039 (7)0.0069 (7)−0.0082 (7)
C40.0396 (9)0.0387 (8)0.0363 (8)0.0037 (7)0.0064 (7)−0.0053 (7)
C50.0412 (9)0.0371 (8)0.0367 (8)0.0034 (7)0.0061 (7)−0.0039 (7)
C60.0450 (9)0.0420 (9)0.0455 (9)0.0075 (7)0.0080 (7)0.0007 (8)
C70.0409 (9)0.0399 (9)0.0401 (8)0.0051 (7)0.0038 (7)−0.0022 (7)
C80.0399 (9)0.0369 (8)0.0368 (8)0.0029 (7)0.0047 (7)−0.0036 (7)
C90.0396 (8)0.0349 (8)0.0376 (8)0.0017 (7)0.0056 (7)−0.0034 (7)
C100.0388 (9)0.0431 (9)0.0392 (9)0.0036 (7)0.0032 (7)−0.0049 (7)
C110.0386 (8)0.0389 (8)0.0379 (8)0.0025 (7)0.0017 (7)−0.0031 (7)
C120.0474 (10)0.0459 (9)0.0379 (8)0.0022 (8)0.0078 (7)0.0005 (7)
C130.0426 (9)0.0484 (10)0.0450 (9)0.0006 (8)0.0098 (7)−0.0017 (8)
C140.0368 (8)0.0475 (9)0.0435 (9)0.0043 (7)0.0026 (7)−0.0019 (8)
C150.0741 (14)0.0684 (13)0.0482 (10)0.0172 (11)0.0129 (10)0.0118 (10)
C160.0717 (15)0.0681 (14)0.1065 (19)−0.0097 (12)0.0382 (14)0.0046 (14)
C170.0536 (11)0.0765 (14)0.0700 (13)0.0212 (10)0.0104 (10)−0.0125 (11)
C180.0665 (13)0.0868 (16)0.0526 (11)−0.0165 (12)−0.0026 (10)−0.0160 (11)
C190.0477 (11)0.0890 (15)0.0636 (12)−0.0002 (10)0.0165 (9)0.0115 (11)
O10.0621 (8)0.0764 (9)0.0543 (8)0.0081 (7)0.0177 (7)0.0207 (7)
O20.0554 (8)0.0657 (9)0.0712 (9)0.0024 (7)0.0298 (7)0.0041 (7)
O30.0375 (6)0.0581 (7)0.0487 (7)0.0028 (5)0.0056 (5)−0.0093 (6)
O40.0424 (7)0.0934 (11)0.0526 (7)0.0150 (7)0.0069 (6)0.0189 (7)
O50.0399 (7)0.0773 (9)0.0495 (7)0.0038 (6)0.0005 (6)0.0141 (7)
O60.0447 (7)0.0585 (7)0.0411 (6)−0.0002 (6)−0.0016 (5)0.0051 (6)
O70.0489 (7)0.0822 (10)0.0461 (7)0.0018 (7)0.0096 (6)0.0156 (7)
C1—O11.355 (2)C13—C141.380 (2)
C1—C61.374 (2)C13—C191.505 (2)
C1—C21.403 (2)C14—H140.9300
C2—O21.372 (2)C15—O11.429 (2)
C2—C31.390 (2)C15—H15A0.9600
C3—O31.3723 (19)C15—H15B0.9600
C3—C41.405 (2)C15—H15C0.9600
C4—C51.403 (2)C16—O21.419 (2)
C4—C101.494 (2)C16—H16A0.9600
C5—C61.393 (2)C16—H16B0.9600
C5—C71.485 (2)C16—H16C0.9600
C6—H60.9300C17—O31.428 (2)
C7—O51.2245 (19)C17—H17A0.9600
C7—C81.468 (2)C17—H17B0.9600
C8—C141.394 (2)C17—H17C0.9600
C8—C91.409 (2)C18—O61.425 (2)
C9—C111.397 (2)C18—H18A0.9600
C9—C101.499 (2)C18—H18B0.9600
C10—O41.2144 (19)C18—H18C0.9600
C11—O61.3699 (18)C19—H19A0.9600
C11—C121.400 (2)C19—H19B0.9600
C12—O71.355 (2)C19—H19C0.9600
C12—C131.395 (2)O7—H70.8200
O1—C1—C6125.14 (16)C13—C14—C8122.57 (15)
O1—C1—C2115.97 (16)C13—C14—H14118.7
C6—C1—C2118.88 (16)C8—C14—H14118.7
O2—C2—C3118.82 (16)O1—C15—H15A109.5
O2—C2—C1120.56 (16)O1—C15—H15B109.5
C3—C2—C1120.52 (16)H15A—C15—H15B109.5
O3—C3—C2116.80 (15)O1—C15—H15C109.5
O3—C3—C4122.02 (15)H15A—C15—H15C109.5
C2—C3—C4121.13 (15)H15B—C15—H15C109.5
C5—C4—C3117.20 (15)O2—C16—H16A109.5
C5—C4—C10120.50 (14)O2—C16—H16B109.5
C3—C4—C10122.29 (14)H16A—C16—H16B109.5
C6—C5—C4121.45 (15)O2—C16—H16C109.5
C6—C5—C7117.22 (14)H16A—C16—H16C109.5
C4—C5—C7121.32 (15)H16B—C16—H16C109.5
C1—C6—C5120.80 (16)O3—C17—H17A109.5
C1—C6—H6119.6O3—C17—H17B109.5
C5—C6—H6119.6H17A—C17—H17B109.5
O5—C7—C8121.37 (16)O3—C17—H17C109.5
O5—C7—C5120.42 (15)H17A—C17—H17C109.5
C8—C7—C5118.21 (14)H17B—C17—H17C109.5
C14—C8—C9120.37 (15)O6—C18—H18A109.5
C14—C8—C7118.30 (14)O6—C18—H18B109.5
C9—C8—C7121.33 (15)H18A—C18—H18B109.5
C11—C9—C8117.57 (15)O6—C18—H18C109.5
C11—C9—C10121.97 (14)H18A—C18—H18C109.5
C8—C9—C10120.37 (14)H18B—C18—H18C109.5
O4—C10—C4121.60 (15)C13—C19—H19A109.5
O4—C10—C9120.89 (15)C13—C19—H19B109.5
C4—C10—C9117.48 (13)H19A—C19—H19B109.5
O6—C11—C9124.92 (15)C13—C19—H19C109.5
O6—C11—C12114.54 (14)H19A—C19—H19C109.5
C9—C11—C12120.53 (14)H19B—C19—H19C109.5
O7—C12—C13118.00 (15)C1—O1—C15118.27 (15)
O7—C12—C11120.03 (14)C2—O2—C16115.05 (15)
C13—C12—C11121.98 (15)C3—O3—C17113.79 (13)
C14—C13—C12116.89 (15)C11—O6—C18113.88 (14)
C14—C13—C19122.28 (16)C12—O7—H7109.5
C12—C13—C19120.83 (16)
D—H···AD—HH···AD···AD—H···A
C18—H18A···O40.962.533.074 (3)116
C17—H17A···O40.962.603.046 (3)109
C16—H16A···O10.962.503.049 (3)116
O7—H7···O60.822.192.6482 (17)116
O7—H7···O3i0.822.022.7221 (16)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18A⋯O40.962.533.074 (3)116
C17—H17A⋯O40.962.603.046 (3)109
C16—H16A⋯O10.962.503.049 (3)116
O7—H7⋯O60.822.192.6482 (17)116
O7—H7⋯O3i0.822.022.7221 (16)144

Symmetry code: (i) .

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