| Literature DB >> 21201403 |
Li-Cai Zhu1, Zhen-Gang Zhao, Shu-Juan Yu.
Abstract
The title compound, C(19)H(18)O(7), also known as chrysoobtusin, was isolated from Cassia tora L. (Leguminosae). The anthraquinone ring system is almost planar, the dihedral angle between the two benzene rings being 4.27 (4)°. The structure is stabilized by intra- and inter-molecular O-H⋯O and C-H⋯O hydrogen bonds, and by weak π-π stacking inter-actions along the b axis, with a centroid-centroid distance between related benzene rings of 3.800 (4) Å.Entities:
Year: 2008 PMID: 21201403 PMCID: PMC2960471 DOI: 10.1107/S1600536807067864
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H18O7 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3645 reflections |
| θ = 1.4–28.0º | |
| µ = 0.11 mm−1 | |
| β = 106.581 (2)º | Block, yellow |
| 0.30 × 0.28 × 0.26 mm | |
| Bruker APEXII area-detector diffractometer | 2527 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 27.5º |
| θmin = 1.8º | |
| f and ω scans | |
| Absorption correction: none | |
| 13295 measured reflections | |
| 3871 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 3871 reflections | Δρmax = 0.19 e Å−3 |
| 241 parameters | Δρmin = −0.21 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.12772 (16) | 0.3847 (2) | −0.08053 (10) | 0.0478 (4) | |
| C2 | 0.23670 (15) | 0.3514 (2) | −0.03234 (10) | 0.0479 (4) | |
| C3 | 0.25066 (14) | 0.2624 (2) | 0.03525 (9) | 0.0417 (4) | |
| C4 | 0.15663 (13) | 0.2073 (2) | 0.05800 (9) | 0.0391 (4) | |
| C5 | 0.04861 (13) | 0.2443 (2) | 0.00932 (9) | 0.0394 (4) | |
| C6 | 0.03506 (15) | 0.3313 (2) | −0.05891 (9) | 0.0452 (4) | |
| H6 | −0.0376 | 0.3536 | −0.0902 | 0.054* | |
| C7 | −0.05610 (14) | 0.1888 (2) | 0.02762 (9) | 0.0419 (4) | |
| C8 | −0.04420 (13) | 0.10489 (19) | 0.10100 (9) | 0.0391 (4) | |
| C9 | 0.06335 (13) | 0.07377 (19) | 0.15239 (9) | 0.0385 (4) | |
| C10 | 0.16909 (14) | 0.1101 (2) | 0.12996 (9) | 0.0420 (4) | |
| C11 | 0.06680 (13) | −0.0001 (2) | 0.22235 (9) | 0.0404 (4) | |
| C12 | −0.03346 (14) | −0.0496 (2) | 0.23820 (9) | 0.0447 (4) | |
| C13 | −0.14001 (14) | −0.0222 (2) | 0.18680 (9) | 0.0459 (4) | |
| C14 | −0.14247 (14) | 0.0570 (2) | 0.11918 (9) | 0.0444 (4) | |
| H14 | −0.2124 | 0.0793 | 0.0844 | 0.053* | |
| C15 | 0.01444 (17) | 0.4980 (3) | −0.19883 (11) | 0.0645 (5) | |
| H15A | −0.0223 | 0.3913 | −0.2157 | 0.097* | |
| H15B | 0.0236 | 0.5600 | −0.2418 | 0.097* | |
| H15C | −0.0311 | 0.5634 | −0.1744 | 0.097* | |
| C16 | 0.3571 (2) | 0.5740 (3) | −0.04686 (16) | 0.0795 (7) | |
| H16A | 0.2951 | 0.6370 | −0.0794 | 0.119* | |
| H16B | 0.4246 | 0.5946 | −0.0619 | 0.119* | |
| H16C | 0.3690 | 0.6098 | 0.0049 | 0.119* | |
| C17 | 0.41092 (17) | 0.0855 (3) | 0.06199 (13) | 0.0682 (6) | |
| H17A | 0.3652 | −0.0108 | 0.0666 | 0.102* | |
| H17B | 0.4855 | 0.0729 | 0.0967 | 0.102* | |
| H17C | 0.4163 | 0.0920 | 0.0109 | 0.102* | |
| C18 | 0.21311 (19) | 0.1135 (3) | 0.32189 (12) | 0.0727 (6) | |
| H18A | 0.2443 | 0.1858 | 0.2907 | 0.109* | |
| H18B | 0.2723 | 0.0790 | 0.3660 | 0.109* | |
| H18C | 0.1559 | 0.1745 | 0.3375 | 0.109* | |
| C19 | −0.24641 (16) | −0.0758 (3) | 0.20556 (12) | 0.0666 (6) | |
| H19A | −0.3114 | −0.0311 | 0.1680 | 0.100* | |
| H19B | −0.2450 | −0.0327 | 0.2548 | 0.100* | |
| H19C | −0.2507 | −0.1978 | 0.2058 | 0.100* | |
| O1 | 0.12327 (11) | 0.46722 (18) | −0.14620 (7) | 0.0641 (4) | |
| O2 | 0.33123 (11) | 0.39758 (17) | −0.05315 (8) | 0.0617 (4) | |
| O3 | 0.36000 (9) | 0.23760 (15) | 0.07962 (6) | 0.0495 (3) | |
| O4 | 0.26068 (10) | 0.05769 (19) | 0.16791 (7) | 0.0642 (4) | |
| O5 | −0.14949 (10) | 0.21417 (18) | −0.01744 (7) | 0.0581 (4) | |
| O6 | 0.16389 (10) | −0.03329 (16) | 0.27947 (6) | 0.0510 (3) | |
| O7 | −0.02886 (10) | −0.12633 (19) | 0.30522 (7) | 0.0599 (4) | |
| H7 | 0.0376 | −0.1434 | 0.3291 | 0.090* |
| C1 | 0.0551 (11) | 0.0446 (9) | 0.0446 (9) | 0.0084 (8) | 0.0161 (8) | 0.0035 (8) |
| C2 | 0.0478 (10) | 0.0460 (9) | 0.0522 (10) | 0.0032 (8) | 0.0180 (8) | −0.0028 (8) |
| C3 | 0.0395 (9) | 0.0421 (9) | 0.0407 (9) | 0.0039 (7) | 0.0069 (7) | −0.0082 (7) |
| C4 | 0.0396 (9) | 0.0387 (8) | 0.0363 (8) | 0.0037 (7) | 0.0064 (7) | −0.0053 (7) |
| C5 | 0.0412 (9) | 0.0371 (8) | 0.0367 (8) | 0.0034 (7) | 0.0061 (7) | −0.0039 (7) |
| C6 | 0.0450 (9) | 0.0420 (9) | 0.0455 (9) | 0.0075 (7) | 0.0080 (7) | 0.0007 (8) |
| C7 | 0.0409 (9) | 0.0399 (9) | 0.0401 (8) | 0.0051 (7) | 0.0038 (7) | −0.0022 (7) |
| C8 | 0.0399 (9) | 0.0369 (8) | 0.0368 (8) | 0.0029 (7) | 0.0047 (7) | −0.0036 (7) |
| C9 | 0.0396 (8) | 0.0349 (8) | 0.0376 (8) | 0.0017 (7) | 0.0056 (7) | −0.0034 (7) |
| C10 | 0.0388 (9) | 0.0431 (9) | 0.0392 (9) | 0.0036 (7) | 0.0032 (7) | −0.0049 (7) |
| C11 | 0.0386 (8) | 0.0389 (8) | 0.0379 (8) | 0.0025 (7) | 0.0017 (7) | −0.0031 (7) |
| C12 | 0.0474 (10) | 0.0459 (9) | 0.0379 (8) | 0.0022 (8) | 0.0078 (7) | 0.0005 (7) |
| C13 | 0.0426 (9) | 0.0484 (10) | 0.0450 (9) | 0.0006 (8) | 0.0098 (7) | −0.0017 (8) |
| C14 | 0.0368 (8) | 0.0475 (9) | 0.0435 (9) | 0.0043 (7) | 0.0026 (7) | −0.0019 (8) |
| C15 | 0.0741 (14) | 0.0684 (13) | 0.0482 (10) | 0.0172 (11) | 0.0129 (10) | 0.0118 (10) |
| C16 | 0.0717 (15) | 0.0681 (14) | 0.1065 (19) | −0.0097 (12) | 0.0382 (14) | 0.0046 (14) |
| C17 | 0.0536 (11) | 0.0765 (14) | 0.0700 (13) | 0.0212 (10) | 0.0104 (10) | −0.0125 (11) |
| C18 | 0.0665 (13) | 0.0868 (16) | 0.0526 (11) | −0.0165 (12) | −0.0026 (10) | −0.0160 (11) |
| C19 | 0.0477 (11) | 0.0890 (15) | 0.0636 (12) | −0.0002 (10) | 0.0165 (9) | 0.0115 (11) |
| O1 | 0.0621 (8) | 0.0764 (9) | 0.0543 (8) | 0.0081 (7) | 0.0177 (7) | 0.0207 (7) |
| O2 | 0.0554 (8) | 0.0657 (9) | 0.0712 (9) | 0.0024 (7) | 0.0298 (7) | 0.0041 (7) |
| O3 | 0.0375 (6) | 0.0581 (7) | 0.0487 (7) | 0.0028 (5) | 0.0056 (5) | −0.0093 (6) |
| O4 | 0.0424 (7) | 0.0934 (11) | 0.0526 (7) | 0.0150 (7) | 0.0069 (6) | 0.0189 (7) |
| O5 | 0.0399 (7) | 0.0773 (9) | 0.0495 (7) | 0.0038 (6) | 0.0005 (6) | 0.0141 (7) |
| O6 | 0.0447 (7) | 0.0585 (7) | 0.0411 (6) | −0.0002 (6) | −0.0016 (5) | 0.0051 (6) |
| O7 | 0.0489 (7) | 0.0822 (10) | 0.0461 (7) | 0.0018 (7) | 0.0096 (6) | 0.0156 (7) |
| C1—O1 | 1.355 (2) | C13—C14 | 1.380 (2) |
| C1—C6 | 1.374 (2) | C13—C19 | 1.505 (2) |
| C1—C2 | 1.403 (2) | C14—H14 | 0.9300 |
| C2—O2 | 1.372 (2) | C15—O1 | 1.429 (2) |
| C2—C3 | 1.390 (2) | C15—H15A | 0.9600 |
| C3—O3 | 1.3723 (19) | C15—H15B | 0.9600 |
| C3—C4 | 1.405 (2) | C15—H15C | 0.9600 |
| C4—C5 | 1.403 (2) | C16—O2 | 1.419 (2) |
| C4—C10 | 1.494 (2) | C16—H16A | 0.9600 |
| C5—C6 | 1.393 (2) | C16—H16B | 0.9600 |
| C5—C7 | 1.485 (2) | C16—H16C | 0.9600 |
| C6—H6 | 0.9300 | C17—O3 | 1.428 (2) |
| C7—O5 | 1.2245 (19) | C17—H17A | 0.9600 |
| C7—C8 | 1.468 (2) | C17—H17B | 0.9600 |
| C8—C14 | 1.394 (2) | C17—H17C | 0.9600 |
| C8—C9 | 1.409 (2) | C18—O6 | 1.425 (2) |
| C9—C11 | 1.397 (2) | C18—H18A | 0.9600 |
| C9—C10 | 1.499 (2) | C18—H18B | 0.9600 |
| C10—O4 | 1.2144 (19) | C18—H18C | 0.9600 |
| C11—O6 | 1.3699 (18) | C19—H19A | 0.9600 |
| C11—C12 | 1.400 (2) | C19—H19B | 0.9600 |
| C12—O7 | 1.355 (2) | C19—H19C | 0.9600 |
| C12—C13 | 1.395 (2) | O7—H7 | 0.8200 |
| O1—C1—C6 | 125.14 (16) | C13—C14—C8 | 122.57 (15) |
| O1—C1—C2 | 115.97 (16) | C13—C14—H14 | 118.7 |
| C6—C1—C2 | 118.88 (16) | C8—C14—H14 | 118.7 |
| O2—C2—C3 | 118.82 (16) | O1—C15—H15A | 109.5 |
| O2—C2—C1 | 120.56 (16) | O1—C15—H15B | 109.5 |
| C3—C2—C1 | 120.52 (16) | H15A—C15—H15B | 109.5 |
| O3—C3—C2 | 116.80 (15) | O1—C15—H15C | 109.5 |
| O3—C3—C4 | 122.02 (15) | H15A—C15—H15C | 109.5 |
| C2—C3—C4 | 121.13 (15) | H15B—C15—H15C | 109.5 |
| C5—C4—C3 | 117.20 (15) | O2—C16—H16A | 109.5 |
| C5—C4—C10 | 120.50 (14) | O2—C16—H16B | 109.5 |
| C3—C4—C10 | 122.29 (14) | H16A—C16—H16B | 109.5 |
| C6—C5—C4 | 121.45 (15) | O2—C16—H16C | 109.5 |
| C6—C5—C7 | 117.22 (14) | H16A—C16—H16C | 109.5 |
| C4—C5—C7 | 121.32 (15) | H16B—C16—H16C | 109.5 |
| C1—C6—C5 | 120.80 (16) | O3—C17—H17A | 109.5 |
| C1—C6—H6 | 119.6 | O3—C17—H17B | 109.5 |
| C5—C6—H6 | 119.6 | H17A—C17—H17B | 109.5 |
| O5—C7—C8 | 121.37 (16) | O3—C17—H17C | 109.5 |
| O5—C7—C5 | 120.42 (15) | H17A—C17—H17C | 109.5 |
| C8—C7—C5 | 118.21 (14) | H17B—C17—H17C | 109.5 |
| C14—C8—C9 | 120.37 (15) | O6—C18—H18A | 109.5 |
| C14—C8—C7 | 118.30 (14) | O6—C18—H18B | 109.5 |
| C9—C8—C7 | 121.33 (15) | H18A—C18—H18B | 109.5 |
| C11—C9—C8 | 117.57 (15) | O6—C18—H18C | 109.5 |
| C11—C9—C10 | 121.97 (14) | H18A—C18—H18C | 109.5 |
| C8—C9—C10 | 120.37 (14) | H18B—C18—H18C | 109.5 |
| O4—C10—C4 | 121.60 (15) | C13—C19—H19A | 109.5 |
| O4—C10—C9 | 120.89 (15) | C13—C19—H19B | 109.5 |
| C4—C10—C9 | 117.48 (13) | H19A—C19—H19B | 109.5 |
| O6—C11—C9 | 124.92 (15) | C13—C19—H19C | 109.5 |
| O6—C11—C12 | 114.54 (14) | H19A—C19—H19C | 109.5 |
| C9—C11—C12 | 120.53 (14) | H19B—C19—H19C | 109.5 |
| O7—C12—C13 | 118.00 (15) | C1—O1—C15 | 118.27 (15) |
| O7—C12—C11 | 120.03 (14) | C2—O2—C16 | 115.05 (15) |
| C13—C12—C11 | 121.98 (15) | C3—O3—C17 | 113.79 (13) |
| C14—C13—C12 | 116.89 (15) | C11—O6—C18 | 113.88 (14) |
| C14—C13—C19 | 122.28 (16) | C12—O7—H7 | 109.5 |
| C12—C13—C19 | 120.83 (16) |
| H··· | ||||
| C18—H18A···O4 | 0.96 | 2.53 | 3.074 (3) | 116 |
| C17—H17A···O4 | 0.96 | 2.60 | 3.046 (3) | 109 |
| C16—H16A···O1 | 0.96 | 2.50 | 3.049 (3) | 116 |
| O7—H7···O6 | 0.82 | 2.19 | 2.6482 (17) | 116 |
| O7—H7···O3i | 0.82 | 2.02 | 2.7221 (16) | 144 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C18—H18 | 0.96 | 2.53 | 3.074 (3) | 116 |
| C17—H17 | 0.96 | 2.60 | 3.046 (3) | 109 |
| C16—H16 | 0.96 | 2.50 | 3.049 (3) | 116 |
| O7—H7⋯O6 | 0.82 | 2.19 | 2.6482 (17) | 116 |
| O7—H7⋯O3i | 0.82 | 2.02 | 2.7221 (16) | 144 |
Symmetry code: (i) .