Literature DB >> 21201808

(3S,4S,5S)-4-Hydr-oxy-3-methyl-5-[(2S,3R)-3-methyl-pent-4-en-2-yl]-4,5-dihydro-furan-2(3H)-one.

Annika Gille1, Markus Schürmann, Hans Preut, Martin Hiersemann.   

Abstract

The title compound, C(11)H(18)O(3), was synthesized to prove the relative configuration of the corresponding acyclic C1-C8 stereopentade. Mol-ecules are linked via O-H⋯O hydrogen bonds, forming a chain along the b axis.

Entities:  

Year:  2008        PMID: 21201808      PMCID: PMC2960667          DOI: 10.1107/S1600536808026998

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Abraham et al. (2004a ▶,b ▶); Corey & Snider (1972 ▶); Evans et al. (1981 ▶, 1999 ▶); Körner & Hiersemann (2006 ▶, 2007 ▶); Pollex & Hiersemann (2005 ▶).

Experimental

Crystal data

C11H18O3 M = 198.25 Orthorhombic, a = 5.4414 (14) Å b = 10.132 (2) Å c = 20.975 (8) Å V = 1156.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 291 (1) K 0.36 × 0.06 × 0.02 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 7554 measured reflections 1223 independent reflections 346 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.087 S = 0.97 1223 reflections 131 parameters H-atom parameters constrained Δρmax = 0.09 e Å−3 Δρmin = −0.13 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808026998/bt2768sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026998/bt2768Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H18O3F000 = 432
Mr = 198.25Dx = 1.139 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7554 reflections
a = 5.4414 (14) Åθ = 2.8–25.0º
b = 10.132 (2) ŵ = 0.08 mm1
c = 20.975 (8) ÅT = 291 (1) K
V = 1156.4 (6) Å3Needle, colourless
Z = 40.36 × 0.06 × 0.02 mm
Nonius KappaCCD diffractometer1223 independent reflections
Radiation source: fine-focus sealed tube346 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.048
Detector resolution: 19 vertical, 18 horizontal pixels mm-1θmax = 25.0º
T = 291(1) Kθmin = 2.8º
111 frames via ω–rotation (Δω=2%) and two times 180 s per frame (three sets at different κ–angles) scansh = −6→6
Absorption correction: nonek = −12→12
7554 measured reflectionsl = −24→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.087  [1.0 exp(5.65(sinθ/λ)2)]/[σ2(Fo2)]
S = 0.97(Δ/σ)max = 0.007
1223 reflectionsΔρmax = 0.09 e Å3
131 parametersΔρmin = −0.13 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1778 (7)0.0092 (4)−0.3153 (2)0.0647 (11)
O20.4408 (8)0.0462 (4)−0.2370 (2)0.0971 (19)
O30.3095 (10)−0.2710 (5)−0.3391 (2)0.0890 (15)
H30.4090−0.3080−0.31580.133*
C10.2948 (12)−0.0261 (7)−0.2615 (3)0.075 (2)
C20.2076 (11)−0.1595 (6)−0.2396 (3)0.0641 (19)
H2A0.3449−0.2114−0.22270.077*
C30.1142 (11)−0.2191 (6)−0.3017 (3)0.0635 (19)
H3B−0.0147−0.2849−0.29420.076*
C40.0156 (11)−0.0982 (5)−0.3372 (3)0.0596 (18)
H4A−0.1522−0.0803−0.32270.072*
C50.0176 (10)−0.1020 (6)−0.4090 (3)0.0578 (17)
H5A0.1854−0.1235−0.42250.069*
C6−0.0502 (11)0.0338 (6)−0.4390 (3)0.069 (2)
H6A0.06270.0986−0.42050.082*
C70.0064 (15)0.0286 (7)−0.5094 (4)0.107 (3)
H7A0.1591−0.0070−0.51930.129*
C8−0.1131 (18)0.0629 (9)−0.5549 (4)0.170 (4)
H8A−0.26810.0996−0.54910.205*
H8B−0.05010.0527−0.59580.205*
C90.0066 (12)−0.1412 (5)−0.1883 (3)0.093 (2)
H9A−0.0491−0.2261−0.17400.140*
H9B−0.1291−0.0932−0.20620.140*
H9C0.0731−0.0929−0.15290.140*
C10−0.1534 (11)−0.2165 (5)−0.4322 (3)0.085 (2)
H10A−0.0821−0.2998−0.42070.128*
H10B−0.1712−0.2119−0.47770.128*
H10C−0.3118−0.2079−0.41250.128*
C11−0.3096 (12)0.0798 (6)−0.4222 (3)0.102 (3)
H11A−0.33760.1657−0.44010.152*
H11B−0.32690.0840−0.37670.152*
H11C−0.42730.0187−0.43930.152*
U11U22U33U12U13U23
O10.064 (3)0.056 (3)0.074 (3)−0.002 (3)−0.011 (3)−0.006 (2)
O20.091 (4)0.110 (4)0.091 (4)−0.027 (3)−0.026 (3)−0.012 (3)
O30.105 (4)0.080 (3)0.083 (3)0.034 (3)0.005 (3)0.002 (3)
C10.062 (6)0.083 (6)0.081 (6)0.010 (5)−0.004 (5)−0.010 (5)
C20.073 (5)0.065 (5)0.054 (5)0.008 (4)−0.013 (4)0.009 (3)
C30.072 (5)0.048 (4)0.071 (5)0.000 (4)0.009 (4)0.005 (4)
C40.053 (5)0.056 (4)0.070 (5)0.000 (4)0.002 (4)−0.006 (4)
C50.039 (4)0.068 (4)0.066 (5)0.001 (4)−0.002 (4)−0.008 (4)
C60.072 (6)0.073 (4)0.061 (5)0.005 (4)−0.013 (4)0.009 (4)
C70.133 (7)0.106 (6)0.082 (7)0.050 (6)−0.028 (6)0.007 (5)
C80.233 (13)0.159 (9)0.119 (10)−0.006 (8)−0.019 (9)0.019 (7)
C90.119 (7)0.089 (5)0.071 (6)0.002 (5)0.021 (6)0.004 (4)
C100.094 (6)0.078 (5)0.084 (5)−0.016 (4)−0.015 (5)−0.013 (4)
C110.085 (6)0.111 (6)0.109 (6)0.048 (5)0.007 (5)0.021 (4)
O1—C11.344 (6)C6—C71.508 (8)
O1—C41.475 (6)C6—C111.527 (6)
O2—C11.196 (6)C6—H6A0.9800
O3—C31.422 (6)C7—C81.207 (8)
O3—H30.8200C7—H7A0.9300
C1—C21.504 (7)C8—H8A0.9300
C2—C31.523 (7)C8—H8B0.9300
C2—C91.546 (7)C9—H9A0.9600
C2—H2A0.9800C9—H9B0.9600
C3—C41.531 (6)C9—H9C0.9600
C3—H3B0.9800C10—H10A0.9600
C4—C51.506 (6)C10—H10B0.9600
C4—H4A0.9800C10—H10C0.9600
C5—C61.557 (6)C11—H11A0.9600
C5—C101.564 (7)C11—H11B0.9600
C5—H5A0.9800C11—H11C0.9600
C1—O1—C4110.5 (5)C7—C6—C5108.4 (5)
C3—O3—H3109.5C11—C6—C5113.3 (5)
O2—C1—O1120.8 (7)C7—C6—H6A106.5
O2—C1—C2129.0 (7)C11—C6—H6A106.5
O1—C1—C2110.2 (6)C5—C6—H6A106.5
C1—C2—C3101.6 (5)C8—C7—C6130.9 (9)
C1—C2—C9109.1 (5)C8—C7—H7A114.6
C3—C2—C9114.0 (6)C6—C7—H7A114.6
C1—C2—H2A110.6C7—C8—H8A120.0
C3—C2—H2A110.6C7—C8—H8B120.0
C9—C2—H2A110.6H8A—C8—H8B120.0
O3—C3—C2111.7 (5)C2—C9—H9A109.5
O3—C3—C4106.8 (5)C2—C9—H9B109.5
C2—C3—C4102.5 (5)H9A—C9—H9B109.5
O3—C3—H3B111.8C2—C9—H9C109.5
C2—C3—H3B111.8H9A—C9—H9C109.5
C4—C3—H3B111.8H9B—C9—H9C109.5
O1—C4—C5109.1 (5)C5—C10—H10A109.5
O1—C4—C3103.2 (4)C5—C10—H10B109.5
C5—C4—C3117.6 (5)H10A—C10—H10B109.5
O1—C4—H4A108.8C5—C10—H10C109.5
C5—C4—H4A108.8H10A—C10—H10C109.5
C3—C4—H4A108.8H10B—C10—H10C109.5
C4—C5—C6112.3 (5)C6—C11—H11A109.5
C4—C5—C10109.0 (5)C6—C11—H11B109.5
C6—C5—C10112.8 (5)H11A—C11—H11B109.5
C4—C5—H5A107.5C6—C11—H11C109.5
C6—C5—H5A107.5H11A—C11—H11C109.5
C10—C5—H5A107.5H11B—C11—H11C109.5
C7—C6—C11115.1 (5)
C4—O1—C1—O2177.8 (6)C2—C3—C4—O131.7 (6)
C4—O1—C1—C2−3.8 (7)O3—C3—C4—C534.3 (8)
O2—C1—C2—C3−157.8 (7)C2—C3—C4—C5151.8 (5)
O1—C1—C2—C324.0 (7)O1—C4—C5—C6−54.5 (6)
O2—C1—C2—C981.5 (9)C3—C4—C5—C6−171.5 (5)
O1—C1—C2—C9−96.7 (6)O1—C4—C5—C10179.7 (5)
C1—C2—C3—O380.8 (6)C3—C4—C5—C1062.7 (7)
C9—C2—C3—O3−162.0 (5)C4—C5—C6—C7168.6 (6)
C1—C2—C3—C4−33.2 (6)C10—C5—C6—C7−67.7 (7)
C9—C2—C3—C484.0 (6)C4—C5—C6—C11−62.3 (7)
C1—O1—C4—C5−143.8 (5)C10—C5—C6—C1161.4 (7)
C1—O1—C4—C3−18.0 (6)C11—C6—C7—C85.6 (14)
O3—C3—C4—O1−85.8 (5)C5—C6—C7—C8133.7 (11)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2i0.822.022.798 (6)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.822.022.798 (6)158

Symmetry code: (i) .

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  4 in total
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1.  (3R,4R,5S)-4-Hydr-oxy-3-methyl-5-[(2S,3R)-3-methyl-pent-4-en-2-yl]-4,5-dihydro-furan-2(3H)-one.

Authors:  Annika Gille; Markus Schürmann; Hans Preut; Martin Hiersemann
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-28
  1 in total

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