| Literature DB >> 21201690 |
Ying Li, Ping Li, Qiu-Ping Zhou, Guo-Fang Zhang, Seik Weng Ng.
Abstract
The three independent organic mol-ecules of 3,5-dinitro-pyridin-4(1H)-one monohydrate, C(5)H(3)N(3)O(5)·H(2)O, each feature an N-H⋯O(water) hydrogen bond. Each water mol-ecule serves as hydrogen-bond donor to two carbonyl O atoms; these hydrogen bonds give rise to a layer motif. Two of the three formula units lie on special positions of site symmetry 2.Entities:
Year: 2008 PMID: 21201690 PMCID: PMC2960580 DOI: 10.1107/S1600536808024604
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H3N3O5·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2n 2ab | Cell parameters from 6494 reflections |
| θ = 2.7–27.9º | |
| µ = 0.16 mm−1 | |
| Block, colorless | |
| 0.45 × 0.45 × 0.20 mm |
| Bruker APEXII diffractometer | 3555 independent reflections |
| Radiation source: fine-focus sealed tube | 2852 reflections with |
| Monochromator: graphite | |
| Detector resolution: 9 pixels mm-1 | θmax = 27.5º |
| θmin = 2.7º | |
| φ and ω scans | |
| Absorption correction: none | |
| 21800 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 3555 reflections | Δρmax = 0.35 e Å−3 |
| 281 parameters | Δρmin = −0.31 e Å−3 |
| 10 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| O1 | 0.69961 (7) | 0.46193 (6) | 0.2892 (3) | 0.0552 (4) | |
| O2 | 0.62136 (6) | 0.50982 (6) | 0.4163 (3) | 0.0464 (4) | |
| O3 | 0.60319 (6) | 0.62125 (6) | 0.2292 (2) | 0.0431 (4) | |
| O4 | 0.61633 (6) | 0.73545 (6) | 0.0695 (3) | 0.0486 (4) | |
| O5 | 0.70310 (8) | 0.77792 (8) | 0.1081 (6) | 0.1176 (12) | |
| O6 | 0.60858 (6) | 0.75858 (6) | 0.5467 (3) | 0.0496 (4) | |
| O7 | 0.65774 (6) | 0.67898 (7) | 0.6579 (3) | 0.0562 (4) | |
| O8 | 0.5000 | 0.77618 (7) | 0.7500 | 0.0389 (4) | |
| O9 | 0.65904 (7) | 0.92189 (7) | 0.1991 (3) | 0.0659 (5) | |
| O10 | 0.61401 (6) | 1.00203 (6) | 0.0759 (3) | 0.0482 (4) | |
| O11 | 0.5000 | 1.02039 (7) | 0.2500 | 0.0357 (4) | |
| O1W | 0.91543 (6) | 0.62174 (6) | 0.2293 (3) | 0.0507 (4) | |
| O2W | 0.5000 | 0.46255 (9) | 0.7500 | 0.0627 (7) | |
| O3W | 0.5000 | 0.70522 (8) | 0.2500 | 0.0416 (5) | |
| N1 | 0.67114 (7) | 0.50953 (7) | 0.3278 (3) | 0.0360 (3) | |
| N2 | 0.67066 (7) | 0.73271 (7) | 0.1089 (3) | 0.0435 (4) | |
| N3 | 0.79137 (7) | 0.61956 (8) | 0.1992 (3) | 0.0434 (4) | |
| N4 | 0.61008 (6) | 0.70807 (7) | 0.6311 (3) | 0.0357 (3) | |
| N5 | 0.5000 | 0.58686 (9) | 0.7500 | 0.0376 (5) | |
| N6 | 0.5000 | 0.83100 (9) | 0.2500 | 0.0384 (5) | |
| N7 | 0.61264 (7) | 0.95139 (7) | 0.1582 (3) | 0.0377 (4) | |
| C1 | 0.76100 (8) | 0.56854 (9) | 0.2549 (3) | 0.0390 (4) | |
| H1A | 0.7829 | 0.5329 | 0.2857 | 0.047* | |
| C2 | 0.69872 (8) | 0.56805 (8) | 0.2672 (3) | 0.0315 (4) | |
| C3 | 0.65995 (8) | 0.62114 (7) | 0.2208 (3) | 0.0302 (4) | |
| C4 | 0.69804 (8) | 0.67347 (8) | 0.1610 (3) | 0.0337 (4) | |
| C5 | 0.76066 (8) | 0.67135 (9) | 0.1539 (3) | 0.0405 (4) | |
| H5A | 0.7825 | 0.7065 | 0.1169 | 0.049* | |
| C6 | 0.55166 (8) | 0.61756 (8) | 0.7027 (3) | 0.0345 (4) | |
| H6A | 0.5874 | 0.5957 | 0.6733 | 0.041* | |
| C7 | 0.55244 (7) | 0.68038 (7) | 0.6972 (3) | 0.0290 (4) | |
| C8 | 0.5000 | 0.71922 (10) | 0.7500 | 0.0269 (5) | |
| C9 | 0.55223 (9) | 0.86172 (8) | 0.2128 (3) | 0.0360 (4) | |
| H9 | 0.5884 | 0.8398 | 0.1893 | 0.043* | |
| C10 | 0.55324 (8) | 0.92451 (7) | 0.2090 (3) | 0.0301 (4) | |
| C11 | 0.5000 | 0.96327 (10) | 0.2500 | 0.0278 (5) | |
| H11 | 0.9376 (8) | 0.6540 (6) | 0.220 (4) | 0.059 (7)* | |
| H12 | 0.9385 (8) | 0.5898 (6) | 0.218 (4) | 0.053 (7)* | |
| H21 | 0.4680 (2) | 0.4409 (7) | 0.757 (4) | 0.055 (7)* | |
| H31 | 0.5318 (3) | 0.6832 (7) | 0.236 (4) | 0.058 (7)* | |
| H3 | 0.8306 (5) | 0.6181 (10) | 0.199 (4) | 0.057 (7)* | |
| H5 | 0.5000 | 0.5477 (5) | 0.7500 | 0.051 (9)* | |
| H6 | 0.5000 | 0.7915 (5) | 0.2500 | 0.051 (9)* |
| O1 | 0.0543 (9) | 0.0322 (7) | 0.0790 (12) | 0.0112 (6) | 0.0045 (8) | 0.0018 (7) |
| O2 | 0.0369 (7) | 0.0417 (7) | 0.0607 (9) | −0.0020 (6) | 0.0068 (7) | 0.0077 (7) |
| O3 | 0.0218 (6) | 0.0344 (7) | 0.0730 (10) | 0.0014 (5) | 0.0029 (6) | 0.0061 (6) |
| O4 | 0.0381 (7) | 0.0401 (7) | 0.0676 (10) | 0.0086 (6) | −0.0039 (7) | 0.0016 (7) |
| O5 | 0.0504 (10) | 0.0435 (10) | 0.259 (4) | −0.0121 (8) | −0.0082 (15) | 0.0441 (15) |
| O6 | 0.0415 (7) | 0.0392 (7) | 0.0681 (10) | −0.0090 (6) | 0.0128 (7) | 0.0059 (7) |
| O7 | 0.0273 (7) | 0.0575 (9) | 0.0837 (12) | 0.0076 (6) | 0.0053 (7) | −0.0044 (8) |
| O8 | 0.0326 (9) | 0.0211 (8) | 0.0631 (13) | 0.000 | 0.0069 (8) | 0.000 |
| O9 | 0.0304 (7) | 0.0501 (9) | 0.1171 (16) | 0.0104 (6) | 0.0009 (8) | 0.0031 (9) |
| O10 | 0.0399 (7) | 0.0372 (7) | 0.0673 (10) | −0.0056 (6) | 0.0073 (7) | 0.0088 (7) |
| O11 | 0.0305 (9) | 0.0199 (8) | 0.0567 (12) | 0.000 | 0.0020 (8) | 0.000 |
| O1W | 0.0263 (7) | 0.0294 (7) | 0.0962 (13) | 0.0008 (5) | −0.0054 (7) | 0.0013 (7) |
| O2W | 0.0296 (10) | 0.0253 (9) | 0.133 (2) | 0.000 | −0.0014 (12) | 0.000 |
| O3W | 0.0286 (9) | 0.0244 (8) | 0.0719 (14) | 0.000 | 0.0004 (9) | 0.000 |
| N1 | 0.0345 (8) | 0.0322 (8) | 0.0414 (9) | 0.0028 (6) | −0.0042 (7) | 0.0014 (6) |
| N2 | 0.0356 (8) | 0.0335 (8) | 0.0614 (11) | −0.0008 (6) | 0.0060 (8) | 0.0067 (7) |
| N3 | 0.0206 (7) | 0.0488 (10) | 0.0608 (11) | 0.0008 (6) | −0.0006 (7) | 0.0012 (8) |
| N4 | 0.0275 (7) | 0.0353 (8) | 0.0442 (9) | −0.0025 (6) | 0.0039 (6) | −0.0084 (7) |
| N5 | 0.0434 (12) | 0.0192 (9) | 0.0503 (14) | 0.000 | 0.0058 (10) | 0.000 |
| N6 | 0.0460 (13) | 0.0188 (9) | 0.0504 (13) | 0.000 | 0.0006 (10) | 0.000 |
| N7 | 0.0293 (7) | 0.0333 (8) | 0.0505 (10) | 0.0011 (6) | 0.0040 (7) | −0.0052 (7) |
| C1 | 0.0282 (9) | 0.0412 (10) | 0.0476 (11) | 0.0067 (7) | −0.0031 (8) | −0.0008 (8) |
| C2 | 0.0270 (8) | 0.0305 (8) | 0.0371 (9) | 0.0010 (6) | −0.0011 (7) | −0.0017 (7) |
| C3 | 0.0237 (8) | 0.0296 (8) | 0.0374 (9) | 0.0006 (6) | 0.0012 (7) | −0.0023 (7) |
| C4 | 0.0264 (8) | 0.0324 (9) | 0.0424 (10) | 0.0001 (7) | 0.0008 (7) | 0.0007 (7) |
| C5 | 0.0288 (9) | 0.0410 (10) | 0.0517 (12) | −0.0062 (7) | 0.0027 (8) | 0.0011 (9) |
| C6 | 0.0339 (9) | 0.0289 (8) | 0.0406 (10) | 0.0063 (7) | 0.0034 (7) | −0.0019 (7) |
| C7 | 0.0261 (8) | 0.0269 (8) | 0.0339 (9) | −0.0002 (6) | 0.0009 (7) | −0.0015 (6) |
| C8 | 0.0258 (11) | 0.0233 (10) | 0.0316 (12) | 0.000 | −0.0020 (9) | 0.000 |
| C9 | 0.0387 (10) | 0.0270 (8) | 0.0421 (10) | 0.0055 (7) | 0.0003 (8) | −0.0018 (7) |
| C10 | 0.0296 (8) | 0.0239 (8) | 0.0369 (9) | 0.0001 (6) | −0.0006 (7) | −0.0009 (6) |
| C11 | 0.0281 (11) | 0.0228 (10) | 0.0323 (12) | 0.000 | −0.0021 (9) | 0.000 |
| O1—N1 | 1.2285 (19) | N5—C6 | 1.341 (2) |
| O2—N1 | 1.228 (2) | N5—C6i | 1.341 (2) |
| O3—C3 | 1.235 (2) | N5—H5 | 0.848 (10) |
| O4—N2 | 1.210 (2) | N6—C9 | 1.338 (2) |
| O5—N2 | 1.206 (2) | N6—C9ii | 1.338 (2) |
| O6—N4 | 1.227 (2) | N6—H6 | 0.854 (10) |
| O7—N4 | 1.225 (2) | N7—C10 | 1.455 (2) |
| O8—C8 | 1.233 (3) | C1—C2 | 1.356 (2) |
| O9—N7 | 1.223 (2) | C1—H1A | 0.9300 |
| O10—N7 | 1.223 (2) | C2—C3 | 1.457 (2) |
| O11—C11 | 1.237 (3) | C3—C4 | 1.457 (2) |
| O1W—H11 | 0.851 (9) | C4—C5 | 1.362 (2) |
| O1W—H12 | 0.858 (9) | C5—H5A | 0.9300 |
| O2W—H21 | 0.840 (8) | C6—C7 | 1.361 (2) |
| O3W—H31 | 0.844 (8) | C6—H6A | 0.9300 |
| N1—C2 | 1.457 (2) | C7—C8 | 1.458 (2) |
| N2—C4 | 1.455 (2) | C8—C7i | 1.458 (2) |
| N3—C1 | 1.338 (3) | C9—C10 | 1.360 (2) |
| N3—C5 | 1.338 (3) | C9—H9 | 0.9300 |
| N3—H3 | 0.853 (10) | C10—C11 | 1.454 (2) |
| N4—C7 | 1.455 (2) | C11—C10ii | 1.454 (2) |
| H11—O1W—H12 | 109.1 (14) | O3—C3—C4 | 125.31 (15) |
| O2—N1—O1 | 123.08 (16) | O3—C3—C2 | 124.72 (15) |
| O2—N1—C2 | 119.15 (14) | C4—C3—C2 | 109.97 (14) |
| O1—N1—C2 | 117.76 (15) | C5—C4—N2 | 115.48 (16) |
| O5—N2—O4 | 121.96 (17) | C5—C4—C3 | 123.38 (16) |
| O5—N2—C4 | 118.53 (17) | N2—C4—C3 | 121.12 (15) |
| O4—N2—C4 | 119.51 (15) | N3—C5—C4 | 121.24 (17) |
| C1—N3—C5 | 120.47 (16) | N3—C5—H5A | 119.4 |
| C1—N3—H3 | 117.6 (16) | C4—C5—H5A | 119.4 |
| C5—N3—H3 | 121.8 (16) | N5—C6—C7 | 120.80 (16) |
| O7—N4—O6 | 123.11 (15) | N5—C6—H6A | 119.6 |
| O7—N4—C7 | 118.20 (15) | C7—C6—H6A | 119.6 |
| O6—N4—C7 | 118.66 (14) | C6—C7—N4 | 115.51 (15) |
| C6—N5—C6i | 120.6 (2) | C6—C7—C8 | 124.09 (16) |
| C6—N5—H5 | 119.71 (10) | N4—C7—C8 | 120.39 (14) |
| C6i—N5—H5 | 119.71 (10) | O8—C8—C7i | 125.23 (9) |
| C9—N6—C9ii | 120.4 (2) | O8—C8—C7 | 125.23 (9) |
| C9—N6—H6 | 119.82 (11) | C7i—C8—C7 | 109.54 (19) |
| C9ii—N6—H6 | 119.82 (10) | N6—C9—C10 | 120.94 (17) |
| O10—N7—O9 | 123.05 (16) | N6—C9—H9 | 119.5 |
| O10—N7—C10 | 118.79 (14) | C10—C9—H9 | 119.5 |
| O9—N7—C10 | 118.16 (16) | C9—C10—C11 | 124.11 (16) |
| N3—C1—C2 | 120.99 (17) | C9—C10—N7 | 114.74 (15) |
| N3—C1—H1A | 119.5 | C11—C10—N7 | 121.15 (14) |
| C2—C1—H1A | 119.5 | O11—C11—C10ii | 125.25 (9) |
| C1—C2—N1 | 115.69 (15) | O11—C11—C10 | 125.25 (9) |
| C1—C2—C3 | 123.94 (16) | C10ii—C11—C10 | 109.50 (19) |
| N1—C2—C3 | 120.36 (14) | ||
| C5—N3—C1—C2 | −0.1 (3) | C6i—N5—C6—C7 | −1.47 (13) |
| N3—C1—C2—N1 | 179.48 (18) | N5—C6—C7—N4 | −176.15 (14) |
| N3—C1—C2—C3 | 0.5 (3) | N5—C6—C7—C8 | 3.0 (3) |
| O2—N1—C2—C1 | 152.19 (18) | O7—N4—C7—C6 | −26.7 (2) |
| O1—N1—C2—C1 | −27.0 (3) | O6—N4—C7—C6 | 151.55 (18) |
| O2—N1—C2—C3 | −28.8 (3) | O7—N4—C7—C8 | 154.12 (15) |
| O1—N1—C2—C3 | 151.95 (18) | O6—N4—C7—C8 | −27.7 (2) |
| C1—C2—C3—O3 | 179.23 (19) | C6—C7—C8—O8 | 178.50 (13) |
| N1—C2—C3—O3 | 0.3 (3) | N4—C7—C8—O8 | −2.34 (18) |
| C1—C2—C3—C4 | −0.1 (3) | C6—C7—C8—C7i | −1.50 (13) |
| N1—C2—C3—C4 | −179.00 (16) | N4—C7—C8—C7i | 177.66 (18) |
| O5—N2—C4—C5 | −16.1 (3) | C9ii—N6—C9—C10 | −0.98 (13) |
| O4—N2—C4—C5 | 164.46 (19) | N6—C9—C10—C11 | 2.0 (3) |
| O5—N2—C4—C3 | 162.5 (3) | N6—C9—C10—N7 | −177.52 (15) |
| O4—N2—C4—C3 | −16.9 (3) | O10—N7—C10—C9 | 152.08 (18) |
| O3—C3—C4—C5 | 179.9 (2) | O9—N7—C10—C9 | −27.5 (3) |
| C2—C3—C4—C5 | −0.7 (3) | O10—N7—C10—C11 | −27.5 (2) |
| O3—C3—C4—N2 | 1.4 (3) | O9—N7—C10—C11 | 152.96 (17) |
| C2—C3—C4—N2 | −179.23 (17) | C9—C10—C11—O11 | 179.01 (13) |
| C1—N3—C5—C4 | −0.7 (3) | N7—C10—C11—O11 | −1.48 (19) |
| N2—C4—C5—N3 | 179.75 (19) | C9—C10—C11—C10ii | −0.99 (13) |
| C3—C4—C5—N3 | 1.2 (3) | N7—C10—C11—C10ii | 178.52 (19) |
| H··· | ||||
| N3—H3···O1w | 0.85 (1) | 1.86 (1) | 2.703 (2) | 172 (2) |
| N5—H5···O2w | 0.85 (1) | 1.84 (1) | 2.692 (3) | 180 |
| N6—H6···O3w | 0.85 (1) | 1.87 (1) | 2.723 (3) | 180 |
| O1w—H11···O8iii | 0.85 (1) | 2.04 (1) | 2.878 (2) | 168 (2) |
| O1w—H12···O11iv | 0.86 (1) | 2.02 (1) | 2.866 (2) | 168 (2) |
| O2w—H21···O3v | 0.84 (1) | 2.05 (1) | 2.888 (2) | 173 (1) |
| O3w—H31···O3 | 0.84 (1) | 2.05 (1) | 2.890 (2) | 172 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3⋯O1w | 0.85 (1) | 1.86 (1) | 2.703 (2) | 172 (2) |
| N5—H5⋯O2w | 0.85 (1) | 1.84 (1) | 2.692 (3) | 180 |
| N6—H6⋯O3w | 0.85 (1) | 1.87 (1) | 2.723 (3) | 180 |
| O1w—H11⋯O8i | 0.85 (1) | 2.04 (1) | 2.878 (2) | 168 (2) |
| O1w—H12⋯O11ii | 0.86 (1) | 2.02 (1) | 2.866 (2) | 168 (2) |
| O2w—H21⋯O3iii | 0.84 (1) | 2.05 (1) | 2.888 (2) | 173 (1) |
| O3w—H31⋯O3 | 0.84 (1) | 2.05 (1) | 2.890 (2) | 172 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .