Literature DB >> 21201690

3,5-Dinitro-pyridin-4(1H)-one monohydrate.

Ying Li, Ping Li, Qiu-Ping Zhou, Guo-Fang Zhang, Seik Weng Ng.   

Abstract

The three independent organic mol-ecules of 3,5-dinitro-pyridin-4(1H)-one monohydrate, C(5)H(3)N(3)O(5)·H(2)O, each feature an N-H⋯O(water) hydrogen bond. Each water mol-ecule serves as hydrogen-bond donor to two carbonyl O atoms; these hydrogen bonds give rise to a layer motif. Two of the three formula units lie on special positions of site symmetry 2.

Entities:  

Year:  2008        PMID: 21201690      PMCID: PMC2960580          DOI: 10.1107/S1600536808024604

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The parent pyridin-4-one homolog crystallizes with five pyridone and six water mol­ecules in the asymmetric unit; see: Jones (2001 ▶).

Experimental

Crystal data

C5H3N3O5·H2O M = 203.12 Orthorhombic, a = 21.728 (2) Å b = 21.654 (2) Å c = 6.5713 (5) Å V = 3091.7 (4) Å3 Z = 16 Mo Kα radiation μ = 0.16 mm−1 T = 293 (2) K 0.45 × 0.45 × 0.20 mm

Data collection

Bruker APEXII diffractometer Absorption correction: none 21800 measured reflections 3555 independent reflections 2852 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.123 S = 1.08 3555 reflections 281 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808024604/pk2110sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808024604/pk2110Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H3N3O5·H2OF000 = 1664
Mr = 203.12Dx = 1.746 Mg m3
Orthorhombic, PbcnMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 6494 reflections
a = 21.728 (2) Åθ = 2.7–27.9º
b = 21.654 (2) ŵ = 0.16 mm1
c = 6.5713 (5) ÅT = 293 (2) K
V = 3091.7 (4) Å3Block, colorless
Z = 160.45 × 0.45 × 0.20 mm
Bruker APEXII diffractometer3555 independent reflections
Radiation source: fine-focus sealed tube2852 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.022
Detector resolution: 9 pixels mm-1θmax = 27.5º
T = 293(2) Kθmin = 2.7º
φ and ω scansh = −28→27
Absorption correction: nonek = −28→27
21800 measured reflectionsl = −8→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.123  w = 1/[σ2(Fo2) + (0.0528P)2 + 1.6904P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
3555 reflectionsΔρmax = 0.35 e Å3
281 parametersΔρmin = −0.31 e Å3
10 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
O10.69961 (7)0.46193 (6)0.2892 (3)0.0552 (4)
O20.62136 (6)0.50982 (6)0.4163 (3)0.0464 (4)
O30.60319 (6)0.62125 (6)0.2292 (2)0.0431 (4)
O40.61633 (6)0.73545 (6)0.0695 (3)0.0486 (4)
O50.70310 (8)0.77792 (8)0.1081 (6)0.1176 (12)
O60.60858 (6)0.75858 (6)0.5467 (3)0.0496 (4)
O70.65774 (6)0.67898 (7)0.6579 (3)0.0562 (4)
O80.50000.77618 (7)0.75000.0389 (4)
O90.65904 (7)0.92189 (7)0.1991 (3)0.0659 (5)
O100.61401 (6)1.00203 (6)0.0759 (3)0.0482 (4)
O110.50001.02039 (7)0.25000.0357 (4)
O1W0.91543 (6)0.62174 (6)0.2293 (3)0.0507 (4)
O2W0.50000.46255 (9)0.75000.0627 (7)
O3W0.50000.70522 (8)0.25000.0416 (5)
N10.67114 (7)0.50953 (7)0.3278 (3)0.0360 (3)
N20.67066 (7)0.73271 (7)0.1089 (3)0.0435 (4)
N30.79137 (7)0.61956 (8)0.1992 (3)0.0434 (4)
N40.61008 (6)0.70807 (7)0.6311 (3)0.0357 (3)
N50.50000.58686 (9)0.75000.0376 (5)
N60.50000.83100 (9)0.25000.0384 (5)
N70.61264 (7)0.95139 (7)0.1582 (3)0.0377 (4)
C10.76100 (8)0.56854 (9)0.2549 (3)0.0390 (4)
H1A0.78290.53290.28570.047*
C20.69872 (8)0.56805 (8)0.2672 (3)0.0315 (4)
C30.65995 (8)0.62114 (7)0.2208 (3)0.0302 (4)
C40.69804 (8)0.67347 (8)0.1610 (3)0.0337 (4)
C50.76066 (8)0.67135 (9)0.1539 (3)0.0405 (4)
H5A0.78250.70650.11690.049*
C60.55166 (8)0.61756 (8)0.7027 (3)0.0345 (4)
H6A0.58740.59570.67330.041*
C70.55244 (7)0.68038 (7)0.6972 (3)0.0290 (4)
C80.50000.71922 (10)0.75000.0269 (5)
C90.55223 (9)0.86172 (8)0.2128 (3)0.0360 (4)
H90.58840.83980.18930.043*
C100.55324 (8)0.92451 (7)0.2090 (3)0.0301 (4)
C110.50000.96327 (10)0.25000.0278 (5)
H110.9376 (8)0.6540 (6)0.220 (4)0.059 (7)*
H120.9385 (8)0.5898 (6)0.218 (4)0.053 (7)*
H210.4680 (2)0.4409 (7)0.757 (4)0.055 (7)*
H310.5318 (3)0.6832 (7)0.236 (4)0.058 (7)*
H30.8306 (5)0.6181 (10)0.199 (4)0.057 (7)*
H50.50000.5477 (5)0.75000.051 (9)*
H60.50000.7915 (5)0.25000.051 (9)*
U11U22U33U12U13U23
O10.0543 (9)0.0322 (7)0.0790 (12)0.0112 (6)0.0045 (8)0.0018 (7)
O20.0369 (7)0.0417 (7)0.0607 (9)−0.0020 (6)0.0068 (7)0.0077 (7)
O30.0218 (6)0.0344 (7)0.0730 (10)0.0014 (5)0.0029 (6)0.0061 (6)
O40.0381 (7)0.0401 (7)0.0676 (10)0.0086 (6)−0.0039 (7)0.0016 (7)
O50.0504 (10)0.0435 (10)0.259 (4)−0.0121 (8)−0.0082 (15)0.0441 (15)
O60.0415 (7)0.0392 (7)0.0681 (10)−0.0090 (6)0.0128 (7)0.0059 (7)
O70.0273 (7)0.0575 (9)0.0837 (12)0.0076 (6)0.0053 (7)−0.0044 (8)
O80.0326 (9)0.0211 (8)0.0631 (13)0.0000.0069 (8)0.000
O90.0304 (7)0.0501 (9)0.1171 (16)0.0104 (6)0.0009 (8)0.0031 (9)
O100.0399 (7)0.0372 (7)0.0673 (10)−0.0056 (6)0.0073 (7)0.0088 (7)
O110.0305 (9)0.0199 (8)0.0567 (12)0.0000.0020 (8)0.000
O1W0.0263 (7)0.0294 (7)0.0962 (13)0.0008 (5)−0.0054 (7)0.0013 (7)
O2W0.0296 (10)0.0253 (9)0.133 (2)0.000−0.0014 (12)0.000
O3W0.0286 (9)0.0244 (8)0.0719 (14)0.0000.0004 (9)0.000
N10.0345 (8)0.0322 (8)0.0414 (9)0.0028 (6)−0.0042 (7)0.0014 (6)
N20.0356 (8)0.0335 (8)0.0614 (11)−0.0008 (6)0.0060 (8)0.0067 (7)
N30.0206 (7)0.0488 (10)0.0608 (11)0.0008 (6)−0.0006 (7)0.0012 (8)
N40.0275 (7)0.0353 (8)0.0442 (9)−0.0025 (6)0.0039 (6)−0.0084 (7)
N50.0434 (12)0.0192 (9)0.0503 (14)0.0000.0058 (10)0.000
N60.0460 (13)0.0188 (9)0.0504 (13)0.0000.0006 (10)0.000
N70.0293 (7)0.0333 (8)0.0505 (10)0.0011 (6)0.0040 (7)−0.0052 (7)
C10.0282 (9)0.0412 (10)0.0476 (11)0.0067 (7)−0.0031 (8)−0.0008 (8)
C20.0270 (8)0.0305 (8)0.0371 (9)0.0010 (6)−0.0011 (7)−0.0017 (7)
C30.0237 (8)0.0296 (8)0.0374 (9)0.0006 (6)0.0012 (7)−0.0023 (7)
C40.0264 (8)0.0324 (9)0.0424 (10)0.0001 (7)0.0008 (7)0.0007 (7)
C50.0288 (9)0.0410 (10)0.0517 (12)−0.0062 (7)0.0027 (8)0.0011 (9)
C60.0339 (9)0.0289 (8)0.0406 (10)0.0063 (7)0.0034 (7)−0.0019 (7)
C70.0261 (8)0.0269 (8)0.0339 (9)−0.0002 (6)0.0009 (7)−0.0015 (6)
C80.0258 (11)0.0233 (10)0.0316 (12)0.000−0.0020 (9)0.000
C90.0387 (10)0.0270 (8)0.0421 (10)0.0055 (7)0.0003 (8)−0.0018 (7)
C100.0296 (8)0.0239 (8)0.0369 (9)0.0001 (6)−0.0006 (7)−0.0009 (6)
C110.0281 (11)0.0228 (10)0.0323 (12)0.000−0.0021 (9)0.000
O1—N11.2285 (19)N5—C61.341 (2)
O2—N11.228 (2)N5—C6i1.341 (2)
O3—C31.235 (2)N5—H50.848 (10)
O4—N21.210 (2)N6—C91.338 (2)
O5—N21.206 (2)N6—C9ii1.338 (2)
O6—N41.227 (2)N6—H60.854 (10)
O7—N41.225 (2)N7—C101.455 (2)
O8—C81.233 (3)C1—C21.356 (2)
O9—N71.223 (2)C1—H1A0.9300
O10—N71.223 (2)C2—C31.457 (2)
O11—C111.237 (3)C3—C41.457 (2)
O1W—H110.851 (9)C4—C51.362 (2)
O1W—H120.858 (9)C5—H5A0.9300
O2W—H210.840 (8)C6—C71.361 (2)
O3W—H310.844 (8)C6—H6A0.9300
N1—C21.457 (2)C7—C81.458 (2)
N2—C41.455 (2)C8—C7i1.458 (2)
N3—C11.338 (3)C9—C101.360 (2)
N3—C51.338 (3)C9—H90.9300
N3—H30.853 (10)C10—C111.454 (2)
N4—C71.455 (2)C11—C10ii1.454 (2)
H11—O1W—H12109.1 (14)O3—C3—C4125.31 (15)
O2—N1—O1123.08 (16)O3—C3—C2124.72 (15)
O2—N1—C2119.15 (14)C4—C3—C2109.97 (14)
O1—N1—C2117.76 (15)C5—C4—N2115.48 (16)
O5—N2—O4121.96 (17)C5—C4—C3123.38 (16)
O5—N2—C4118.53 (17)N2—C4—C3121.12 (15)
O4—N2—C4119.51 (15)N3—C5—C4121.24 (17)
C1—N3—C5120.47 (16)N3—C5—H5A119.4
C1—N3—H3117.6 (16)C4—C5—H5A119.4
C5—N3—H3121.8 (16)N5—C6—C7120.80 (16)
O7—N4—O6123.11 (15)N5—C6—H6A119.6
O7—N4—C7118.20 (15)C7—C6—H6A119.6
O6—N4—C7118.66 (14)C6—C7—N4115.51 (15)
C6—N5—C6i120.6 (2)C6—C7—C8124.09 (16)
C6—N5—H5119.71 (10)N4—C7—C8120.39 (14)
C6i—N5—H5119.71 (10)O8—C8—C7i125.23 (9)
C9—N6—C9ii120.4 (2)O8—C8—C7125.23 (9)
C9—N6—H6119.82 (11)C7i—C8—C7109.54 (19)
C9ii—N6—H6119.82 (10)N6—C9—C10120.94 (17)
O10—N7—O9123.05 (16)N6—C9—H9119.5
O10—N7—C10118.79 (14)C10—C9—H9119.5
O9—N7—C10118.16 (16)C9—C10—C11124.11 (16)
N3—C1—C2120.99 (17)C9—C10—N7114.74 (15)
N3—C1—H1A119.5C11—C10—N7121.15 (14)
C2—C1—H1A119.5O11—C11—C10ii125.25 (9)
C1—C2—N1115.69 (15)O11—C11—C10125.25 (9)
C1—C2—C3123.94 (16)C10ii—C11—C10109.50 (19)
N1—C2—C3120.36 (14)
C5—N3—C1—C2−0.1 (3)C6i—N5—C6—C7−1.47 (13)
N3—C1—C2—N1179.48 (18)N5—C6—C7—N4−176.15 (14)
N3—C1—C2—C30.5 (3)N5—C6—C7—C83.0 (3)
O2—N1—C2—C1152.19 (18)O7—N4—C7—C6−26.7 (2)
O1—N1—C2—C1−27.0 (3)O6—N4—C7—C6151.55 (18)
O2—N1—C2—C3−28.8 (3)O7—N4—C7—C8154.12 (15)
O1—N1—C2—C3151.95 (18)O6—N4—C7—C8−27.7 (2)
C1—C2—C3—O3179.23 (19)C6—C7—C8—O8178.50 (13)
N1—C2—C3—O30.3 (3)N4—C7—C8—O8−2.34 (18)
C1—C2—C3—C4−0.1 (3)C6—C7—C8—C7i−1.50 (13)
N1—C2—C3—C4−179.00 (16)N4—C7—C8—C7i177.66 (18)
O5—N2—C4—C5−16.1 (3)C9ii—N6—C9—C10−0.98 (13)
O4—N2—C4—C5164.46 (19)N6—C9—C10—C112.0 (3)
O5—N2—C4—C3162.5 (3)N6—C9—C10—N7−177.52 (15)
O4—N2—C4—C3−16.9 (3)O10—N7—C10—C9152.08 (18)
O3—C3—C4—C5179.9 (2)O9—N7—C10—C9−27.5 (3)
C2—C3—C4—C5−0.7 (3)O10—N7—C10—C11−27.5 (2)
O3—C3—C4—N21.4 (3)O9—N7—C10—C11152.96 (17)
C2—C3—C4—N2−179.23 (17)C9—C10—C11—O11179.01 (13)
C1—N3—C5—C4−0.7 (3)N7—C10—C11—O11−1.48 (19)
N2—C4—C5—N3179.75 (19)C9—C10—C11—C10ii−0.99 (13)
C3—C4—C5—N31.2 (3)N7—C10—C11—C10ii178.52 (19)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1w0.85 (1)1.86 (1)2.703 (2)172 (2)
N5—H5···O2w0.85 (1)1.84 (1)2.692 (3)180
N6—H6···O3w0.85 (1)1.87 (1)2.723 (3)180
O1w—H11···O8iii0.85 (1)2.04 (1)2.878 (2)168 (2)
O1w—H12···O11iv0.86 (1)2.02 (1)2.866 (2)168 (2)
O2w—H21···O3v0.84 (1)2.05 (1)2.888 (2)173 (1)
O3w—H31···O30.84 (1)2.05 (1)2.890 (2)172 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O1w0.85 (1)1.86 (1)2.703 (2)172 (2)
N5—H5⋯O2w0.85 (1)1.84 (1)2.692 (3)180
N6—H6⋯O3w0.85 (1)1.87 (1)2.723 (3)180
O1w—H11⋯O8i0.85 (1)2.04 (1)2.878 (2)168 (2)
O1w—H12⋯O11ii0.86 (1)2.02 (1)2.866 (2)168 (2)
O2w—H21⋯O3iii0.84 (1)2.05 (1)2.888 (2)173 (1)
O3w—H31⋯O30.84 (1)2.05 (1)2.890 (2)172 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A simple compound with an unexpectedly complex structure: 4-pyridone 6/5-hydrate.

Authors:  P G Jones
Journal:  Acta Crystallogr C       Date:  2001-07-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  4-Amino-2,3,5-trimethyl-pyridine monohydrate.

Authors:  Li-Yan Dai; Fu-Liang Zhang; Liang Shen; Ying-Qi Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20
  1 in total

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