Literature DB >> 21201664

4-[(3-Formyl-4-hydroxy-phen-yl)diazen-yl]-N-(pyrimidin-2-yl)benzene-sulfonamide.

Hoda El-Ghamry, Raafat Issa, Kamal El-Baradie, Keiko Isagai, Shigeyuki Masaoka, Ken Sakai.   

Abstract

The title mol-ecule, C(17)H(13)N(5)O(4)S, has a trans configuration with respect to the diazenyl (azo) group. The pyrimidine ring and the terminal benzene ring are inclined at angles of 89.38 (4) and 1.6 (6)°, respectively, with respect to the central benzene ring. The conformation of the mol-ecule is in part stabilized by an intra-molecular O-H⋯O hydrogen bond. In the crystal structure, mol-ecules related through inversion centers form hydrogen-bonded dimers involving the sulfon-amide N-H group and the N atom of the pyrimidine ring.

Entities:  

Year:  2008        PMID: 21201664      PMCID: PMC2960714          DOI: 10.1107/S1600536808024239

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Gaber et al. (2008 ▶ and references therein); Kakoti et al. (1993 ▶); La Roche & Co (1967a,b); Misra et al. (1998 ▶); Mubarak et al. (2007 ▶); Nagaraja et al. (2002 ▶); Santra & Lahiri (1997 ▶); Vaichulis (1977 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H13N5O4S M = 383.39 Monoclinic, a = 18.579 (2) Å b = 5.7731 (7) Å c = 17.372 (2) Å β = 115.99 (1)° V = 1674.73 Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 100 (2) K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.934, T max = 0.977 17304 measured reflections 3560 independent reflections 3277 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.097 S = 1.05 3560 reflections 245 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: KENX (Sakai, 2004 ▶); software used to prepare material for publication: SHELXL97, TEXSAN (Molecular Structure Corporation, 2001 ▶), KENX and ORTEPII (Johnson, 1976 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808024239/lh2668sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808024239/lh2668Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13N5O4SF000 = 792
Mr = 383.39? # Insert any comments here.
Monoclinic, P21/cDx = 1.521 Mg m3
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 18.579 (2) ÅCell parameters from 9950 reflections
b = 5.7731 (7) Åθ = 2.4–28.3º
c = 17.372 (2) ŵ = 0.23 mm1
β = 115.99 (1)ºT = 100 (2) K
V = 1674.73 Å3Block, dark orange
Z = 40.30 × 0.20 × 0.10 mm
Bruker SMART APEX CCD diffractometer3560 independent reflections
Radiation source: fine-focus sealed tube3277 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.017
T = 100(2) Kθmax = 26.7º
φ and ω scansθmin = 2.4º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −23→23
Tmin = 0.934, Tmax = 0.977k = −7→7
17304 measured reflectionsl = −21→21
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.034  w = 1/[σ2(Fo2) + (0.0513P)2 + 0.9337P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.097(Δ/σ)max = 0.001
S = 1.05Δρmax = 0.42 e Å3
3560 reflectionsΔρmin = −0.37 e Å3
245 parametersExtinction correction: none
Secondary atom site location: difference Fourier map
Experimental. The first 50 frames were rescanned at the end of data collection to evaluate any possible decay phenomenon. Since it was judged to be negligible, no decay correction was applied to the data.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)13.7836 (0.0041) x + 2.4391 (0.0022) y - 13.7785 (0.0036) z = 4.2437 (0.0052)* 0.0258 (0.0010) O1 * -0.0309 (0.0010) O2 * 0.0133 (0.0012) C1 * -0.0188 (0.0013) C2 * -0.0067 (0.0012) C3 * 0.0010 (0.0012) C4 * 0.0430 (0.0013) C5 * 0.0139 (0.0012) C6 * -0.0207 (0.0013) C7 * -0.0198 (0.0009) N1 - 0.1255 (0.0017) N2 - 0.2396 (0.0024) C9 - 0.2576 (0.0024) C10 - 0.2407 (0.0024) C11 - 0.2117 (0.0022) C12 - 0.1607 (0.0019) C13Rms deviation of fitted atoms = 0.022513.5655 (0.0045) x + 2.3850 (0.0032) y - 14.0573 (0.0043) z = 3.6030 (0.0035)Angle to previous plane (with approximate e.s.d.) = 1.60 (0.06)* 0.0132 (0.0011) N2 * -0.0021 (0.0008) C9 * -0.0021 (0.0012) C10 * -0.0053 (0.0012) C11 * -0.0149 (0.0012) C12 * 0.0178 (0.0013) C13 * -0.0066 (0.0004) O1 - 0.0637 (0.0021) O2 0.0152 (0.0018) C1 0.0043 (0.0016) C2 0.0555 (0.0016) C3 0.0836 (0.0016) C4 0.1066 (0.0021) C5 0.0390 (0.0023) C6 - 0.0162 (0.0020) C7 0.1025 (0.0013) N1Rms deviation of fitted atoms = 0.01062.8895 (0.0099) x + 3.8287 (0.0026) y + 10.2469 (0.0065) z = 10.3651 (0.0036)Angle to previous plane (with approximate e.s.d.) = 89.38 (0.04)* -0.0192 (0.0009) N3 * 0.0179 (0.0011) N4 * 0.0136 (0.0010) N5 * 0.0038 (0.0012) C14 * -0.0009 (0.0012) C15 * -0.0197 (0.0013) C16 * 0.0045 (0.0011) C17Rms deviation of fitted atoms = 0.0136
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.67904 (2)0.77281 (6)0.52372 (2)0.02455 (11)
O11.32533 (7)0.9734 (2)1.18827 (7)0.0366 (3)
N50.49729 (7)0.7981 (2)0.57442 (7)0.0246 (3)
O40.67616 (6)0.9243 (2)0.45700 (6)0.0301 (2)
O30.68746 (6)0.52911 (19)0.51537 (7)0.0297 (2)
C170.46694 (9)0.6915 (3)0.62192 (9)0.0289 (3)
H130.41690.74180.61830.035*
N20.94619 (7)1.1123 (2)0.84456 (8)0.0282 (3)
N30.59631 (7)0.8311 (2)0.53095 (8)0.0280 (3)
H100.56680.94460.49870.034*
N11.00856 (7)0.9914 (2)0.87789 (8)0.0280 (3)
O21.24471 (7)1.3545 (2)1.17919 (7)0.0332 (3)
H11.28351.26241.20130.050*
C150.57921 (10)0.4485 (3)0.68056 (10)0.0357 (4)
H110.60790.32620.71810.043*
C160.50602 (9)0.5108 (3)0.67607 (10)0.0338 (3)
H120.48350.43320.70860.041*
C11.26947 (9)0.9081 (3)1.12173 (10)0.0310 (3)
H21.27360.76161.09910.037*
C51.06241 (9)1.3131 (3)0.98413 (10)0.0297 (3)
H41.01711.40670.95180.036*
C61.12111 (9)1.3967 (3)1.05977 (10)0.0299 (3)
H51.11551.54511.08020.036*
C120.81694 (9)1.1545 (3)0.72898 (9)0.0288 (3)
H90.81451.29980.75340.035*
C110.75308 (9)1.0818 (3)0.65434 (9)0.0286 (3)
H80.70741.17770.62620.034*
C80.88818 (9)0.7981 (3)0.73479 (9)0.0279 (3)
H60.93430.70340.76210.034*
C71.18899 (9)1.2628 (3)1.10648 (9)0.0269 (3)
C41.06845 (9)1.0915 (3)0.95400 (9)0.0265 (3)
C31.13632 (9)0.9607 (3)0.99930 (9)0.0266 (3)
H31.14170.81290.97830.032*
C90.82375 (9)0.7222 (3)0.66129 (9)0.0264 (3)
H70.82490.57370.63830.032*
C130.88463 (9)1.0158 (3)0.76846 (9)0.0266 (3)
C21.19719 (9)1.0441 (3)1.07584 (9)0.0266 (3)
N40.61192 (8)0.5519 (2)0.63453 (8)0.0328 (3)
C140.56803 (8)0.7196 (2)0.58287 (9)0.0246 (3)
C100.75726 (8)0.8652 (3)0.62140 (9)0.0242 (3)
U11U22U33U12U13U23
S10.02184 (18)0.0280 (2)0.02274 (19)0.00350 (13)0.00873 (14)0.00169 (13)
O10.0312 (6)0.0394 (6)0.0338 (6)0.0059 (5)0.0091 (5)0.0096 (5)
N50.0208 (6)0.0265 (6)0.0224 (6)0.0000 (5)0.0057 (5)0.0021 (5)
O40.0290 (5)0.0365 (6)0.0256 (5)0.0041 (4)0.0127 (4)0.0044 (4)
O30.0266 (5)0.0294 (6)0.0289 (5)0.0017 (4)0.0083 (4)−0.0033 (4)
C170.0238 (7)0.0335 (8)0.0269 (7)−0.0013 (6)0.0090 (6)0.0028 (6)
N20.0279 (6)0.0288 (6)0.0271 (6)0.0006 (5)0.0114 (5)−0.0006 (5)
N30.0231 (6)0.0318 (7)0.0284 (6)0.0076 (5)0.0107 (5)0.0102 (5)
N10.0277 (6)0.0293 (6)0.0275 (6)0.0005 (5)0.0127 (5)0.0003 (5)
O20.0292 (6)0.0361 (6)0.0280 (5)0.0013 (5)0.0066 (4)−0.0008 (5)
C150.0342 (8)0.0351 (8)0.0319 (8)0.0044 (7)0.0091 (6)0.0127 (7)
C160.0312 (8)0.0368 (8)0.0310 (7)−0.0031 (6)0.0115 (6)0.0091 (6)
C10.0311 (7)0.0297 (8)0.0333 (8)0.0039 (6)0.0150 (6)0.0073 (6)
C50.0255 (7)0.0300 (8)0.0311 (8)0.0052 (6)0.0100 (6)0.0016 (6)
C60.0301 (7)0.0261 (7)0.0323 (8)0.0024 (6)0.0127 (6)−0.0017 (6)
C120.0341 (8)0.0228 (7)0.0294 (7)0.0023 (6)0.0139 (6)−0.0011 (6)
C110.0295 (7)0.0258 (7)0.0289 (7)0.0065 (6)0.0114 (6)0.0034 (6)
C80.0245 (7)0.0319 (8)0.0267 (7)0.0056 (6)0.0105 (6)0.0004 (6)
C70.0256 (7)0.0298 (7)0.0257 (7)−0.0016 (6)0.0116 (6)0.0022 (6)
C40.0264 (7)0.0287 (7)0.0256 (7)−0.0005 (6)0.0126 (6)0.0003 (6)
C30.0297 (7)0.0240 (7)0.0296 (7)0.0006 (6)0.0162 (6)0.0016 (6)
C90.0272 (7)0.0264 (7)0.0266 (7)0.0044 (6)0.0129 (6)−0.0010 (6)
C130.0272 (7)0.0289 (7)0.0243 (7)−0.0008 (6)0.0118 (6)0.0002 (6)
C20.0265 (7)0.0272 (7)0.0280 (7)0.0011 (6)0.0138 (6)0.0057 (6)
N40.0275 (6)0.0359 (7)0.0309 (7)0.0074 (5)0.0091 (5)0.0113 (6)
C140.0220 (6)0.0261 (7)0.0220 (6)0.0002 (5)0.0064 (5)0.0011 (5)
C100.0236 (7)0.0276 (7)0.0214 (6)0.0013 (5)0.0099 (5)0.0012 (5)
S1—O31.4299 (11)C11—C101.391 (2)
S1—O41.4343 (11)C8—C91.384 (2)
S1—N31.6311 (12)C8—C131.400 (2)
S1—C101.7647 (15)C7—C21.404 (2)
O1—C11.226 (2)C4—C31.382 (2)
N5—C141.3362 (19)C3—C21.400 (2)
N5—C171.3362 (19)C9—C101.392 (2)
C17—C161.379 (2)C1—O3i2.9106 (19)
N2—N11.2558 (18)C5—H40.9500
N2—C131.4285 (19)N3—H100.8800
N3—C141.3857 (19)C1—H20.9500
N4—C141.3289 (19)C6—H50.9500
N1—C41.4250 (19)C8—H60.9500
O2—C71.3420 (18)C15—H110.9500
C15—N41.338 (2)C16—H120.9500
C15—C161.375 (2)C12—H90.9500
C1—C21.455 (2)O2—H10.8400
C5—C61.376 (2)C11—H80.9500
C5—C41.405 (2)C3—H30.9500
C6—C71.396 (2)C17—H130.9500
C12—C111.384 (2)C9—H70.9500
C12—C131.392 (2)
O3—S1—O4119.02 (7)C13—C12—H9119.8
O3—S1—N3111.08 (7)C12—C11—C10118.57 (13)
O4—S1—N3103.51 (6)C12—C11—H8120.7
O3—S1—C10108.31 (7)C10—C11—H8120.7
O4—S1—C10108.42 (7)C9—C8—C13119.32 (13)
N3—S1—C10105.68 (7)C9—C8—H6120.3
C14—N5—C17115.89 (13)C13—C8—H6120.3
N5—C17—C16122.09 (14)O2—C7—C6117.16 (14)
N5—C17—H13119.0O2—C7—C2122.97 (13)
C16—C17—H13119.0C6—C7—C2119.87 (14)
N1—N2—C13114.37 (13)C3—C4—C5119.16 (14)
C14—N3—S1126.38 (10)C3—C4—N1116.95 (13)
C14—N3—H10116.8C5—C4—N1123.89 (13)
S1—N3—H10116.8C4—C3—C2120.56 (14)
N2—N1—C4112.94 (13)C4—C3—H3119.7
C7—O2—H1109.5C2—C3—H3119.7
N4—C15—C16123.09 (15)C8—C9—C10119.44 (14)
N4—C15—H11118.5C8—C9—H7120.3
C16—C15—H11118.5C10—C9—H7120.3
C15—C16—C17116.64 (14)C12—C13—C8120.55 (14)
C15—C16—H12121.7C12—C13—N2114.57 (13)
C17—C16—H12121.7C8—C13—N2124.86 (13)
O1—C1—C2123.15 (15)C3—C2—C7119.50 (13)
O1—C1—H2118.4C3—C2—C1120.14 (14)
C2—C1—H2118.4C7—C2—C1120.34 (14)
C6—C5—C4121.07 (14)C14—N4—C15115.06 (13)
C6—C5—H4119.5N4—C14—N5127.19 (14)
C4—C5—H4119.5N4—C14—N3118.86 (13)
C5—C6—C7119.78 (14)N5—C14—N3113.95 (12)
C5—C6—H5120.1C11—C10—C9121.71 (13)
C7—C6—H5120.1C11—C10—S1119.74 (11)
C11—C12—C13120.37 (14)C9—C10—S1118.47 (11)
C11—C12—H9119.8
C14—N5—C17—C16−0.3 (2)C4—C3—C2—C1−178.17 (13)
O3—S1—N3—C1446.71 (15)O2—C7—C2—C3−179.94 (13)
O4—S1—N3—C14175.57 (13)C6—C7—C2—C3−1.2 (2)
C10—S1—N3—C14−70.55 (14)O2—C7—C2—C1−1.9 (2)
C13—N2—N1—C4−179.50 (12)C6—C7—C2—C1176.90 (14)
N4—C15—C16—C17−1.1 (3)O1—C1—C2—C3178.82 (14)
N5—C17—C16—C151.6 (2)O1—C1—C2—C70.8 (2)
C4—C5—C6—C71.8 (2)C16—C15—N4—C14−0.6 (2)
C13—C12—C11—C101.9 (2)C15—N4—C14—N52.2 (2)
C5—C6—C7—O2179.17 (13)C15—N4—C14—N3−178.08 (14)
C5—C6—C7—C20.3 (2)C17—N5—C14—N4−1.7 (2)
C6—C5—C4—C3−3.0 (2)C17—N5—C14—N3178.51 (13)
C6—C5—C4—N1177.69 (14)S1—N3—C14—N42.0 (2)
N2—N1—C4—C3174.33 (13)S1—N3—C14—N5−178.19 (11)
N2—N1—C4—C5−6.4 (2)C12—C11—C10—C9−0.3 (2)
C5—C4—C3—C22.2 (2)C12—C11—C10—S1−177.03 (11)
N1—C4—C3—C2−178.51 (12)C8—C9—C10—C11−1.2 (2)
C13—C8—C9—C101.1 (2)C8—C9—C10—S1175.57 (11)
C11—C12—C13—C8−2.0 (2)O3—S1—C10—C11−165.58 (11)
C11—C12—C13—N2179.57 (13)O4—S1—C10—C1163.96 (13)
C9—C8—C13—C120.4 (2)N3—S1—C10—C11−46.48 (13)
C9—C8—C13—N2178.74 (14)O3—S1—C10—C917.59 (14)
N1—N2—C13—C12−177.01 (13)O4—S1—C10—C9−112.87 (12)
N1—N2—C13—C84.6 (2)N3—S1—C10—C9136.69 (12)
C4—C3—C2—C7−0.1 (2)
D—H···AD—HH···AD···AD—H···A
O2—H1···O10.841.902.6269 (17)145
N3—H10···N5i0.881.982.8574 (17)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1⋯O10.841.902.6269 (17)145
N3—H10⋯N5i0.881.982.8574 (17)179

Symmetry code: (i) .

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