| Literature DB >> 21201664 |
Hoda El-Ghamry, Raafat Issa, Kamal El-Baradie, Keiko Isagai, Shigeyuki Masaoka, Ken Sakai.
Abstract
The title mol-ecule, C(17)H(13)N(5)O(4)S, has a trans configuration with respect to the diazenyl (azo) group. The pyrimidine ring and the terminal benzene ring are inclined at angles of 89.38 (4) and 1.6 (6)°, respectively, with respect to the central benzene ring. The conformation of the mol-ecule is in part stabilized by an intra-molecular O-H⋯O hydrogen bond. In the crystal structure, mol-ecules related through inversion centers form hydrogen-bonded dimers involving the sulfon-amide N-H group and the N atom of the pyrimidine ring.Entities:
Year: 2008 PMID: 21201664 PMCID: PMC2960714 DOI: 10.1107/S1600536808024239
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H13N5O4S | |
| ? # Insert any comments here. | |
| Monoclinic, | |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 9950 reflections | |
| θ = 2.4–28.3º | |
| µ = 0.23 mm−1 | |
| β = 115.99 (1)º | |
| Block, dark orange | |
| 0.30 × 0.20 × 0.10 mm |
| Bruker SMART APEX CCD diffractometer | 3560 independent reflections |
| Radiation source: fine-focus sealed tube | 3277 reflections with |
| Monochromator: graphite | |
| θmax = 26.7º | |
| φ and ω scans | θmin = 2.4º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 17304 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.42 e Å−3 | |
| 3560 reflections | Δρmin = −0.37 e Å−3 |
| 245 parameters | Extinction correction: none |
| Secondary atom site location: difference Fourier map |
| Experimental. The first 50 frames were rescanned at the end of data collection to evaluate any possible decay phenomenon. Since it was judged to be negligible, no decay correction was applied to the data. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes.Least-squares planes ( |
| Refinement. Refinement of |
| S1 | 0.67904 (2) | 0.77281 (6) | 0.52372 (2) | 0.02455 (11) | |
| O1 | 1.32533 (7) | 0.9734 (2) | 1.18827 (7) | 0.0366 (3) | |
| N5 | 0.49729 (7) | 0.7981 (2) | 0.57442 (7) | 0.0246 (3) | |
| O4 | 0.67616 (6) | 0.9243 (2) | 0.45700 (6) | 0.0301 (2) | |
| O3 | 0.68746 (6) | 0.52911 (19) | 0.51537 (7) | 0.0297 (2) | |
| C17 | 0.46694 (9) | 0.6915 (3) | 0.62192 (9) | 0.0289 (3) | |
| H13 | 0.4169 | 0.7418 | 0.6183 | 0.035* | |
| N2 | 0.94619 (7) | 1.1123 (2) | 0.84456 (8) | 0.0282 (3) | |
| N3 | 0.59631 (7) | 0.8311 (2) | 0.53095 (8) | 0.0280 (3) | |
| H10 | 0.5668 | 0.9446 | 0.4987 | 0.034* | |
| N1 | 1.00856 (7) | 0.9914 (2) | 0.87789 (8) | 0.0280 (3) | |
| O2 | 1.24471 (7) | 1.3545 (2) | 1.17919 (7) | 0.0332 (3) | |
| H1 | 1.2835 | 1.2624 | 1.2013 | 0.050* | |
| C15 | 0.57921 (10) | 0.4485 (3) | 0.68056 (10) | 0.0357 (4) | |
| H11 | 0.6079 | 0.3262 | 0.7181 | 0.043* | |
| C16 | 0.50602 (9) | 0.5108 (3) | 0.67607 (10) | 0.0338 (3) | |
| H12 | 0.4835 | 0.4332 | 0.7086 | 0.041* | |
| C1 | 1.26947 (9) | 0.9081 (3) | 1.12173 (10) | 0.0310 (3) | |
| H2 | 1.2736 | 0.7616 | 1.0991 | 0.037* | |
| C5 | 1.06241 (9) | 1.3131 (3) | 0.98413 (10) | 0.0297 (3) | |
| H4 | 1.0171 | 1.4067 | 0.9518 | 0.036* | |
| C6 | 1.12111 (9) | 1.3967 (3) | 1.05977 (10) | 0.0299 (3) | |
| H5 | 1.1155 | 1.5451 | 1.0802 | 0.036* | |
| C12 | 0.81694 (9) | 1.1545 (3) | 0.72898 (9) | 0.0288 (3) | |
| H9 | 0.8145 | 1.2998 | 0.7534 | 0.035* | |
| C11 | 0.75308 (9) | 1.0818 (3) | 0.65434 (9) | 0.0286 (3) | |
| H8 | 0.7074 | 1.1777 | 0.6262 | 0.034* | |
| C8 | 0.88818 (9) | 0.7981 (3) | 0.73479 (9) | 0.0279 (3) | |
| H6 | 0.9343 | 0.7034 | 0.7621 | 0.034* | |
| C7 | 1.18899 (9) | 1.2628 (3) | 1.10648 (9) | 0.0269 (3) | |
| C4 | 1.06845 (9) | 1.0915 (3) | 0.95400 (9) | 0.0265 (3) | |
| C3 | 1.13632 (9) | 0.9607 (3) | 0.99930 (9) | 0.0266 (3) | |
| H3 | 1.1417 | 0.8129 | 0.9783 | 0.032* | |
| C9 | 0.82375 (9) | 0.7222 (3) | 0.66129 (9) | 0.0264 (3) | |
| H7 | 0.8249 | 0.5737 | 0.6383 | 0.032* | |
| C13 | 0.88463 (9) | 1.0158 (3) | 0.76846 (9) | 0.0266 (3) | |
| C2 | 1.19719 (9) | 1.0441 (3) | 1.07584 (9) | 0.0266 (3) | |
| N4 | 0.61192 (8) | 0.5519 (2) | 0.63453 (8) | 0.0328 (3) | |
| C14 | 0.56803 (8) | 0.7196 (2) | 0.58287 (9) | 0.0246 (3) | |
| C10 | 0.75726 (8) | 0.8652 (3) | 0.62140 (9) | 0.0242 (3) |
| S1 | 0.02184 (18) | 0.0280 (2) | 0.02274 (19) | 0.00350 (13) | 0.00873 (14) | 0.00169 (13) |
| O1 | 0.0312 (6) | 0.0394 (6) | 0.0338 (6) | 0.0059 (5) | 0.0091 (5) | 0.0096 (5) |
| N5 | 0.0208 (6) | 0.0265 (6) | 0.0224 (6) | 0.0000 (5) | 0.0057 (5) | 0.0021 (5) |
| O4 | 0.0290 (5) | 0.0365 (6) | 0.0256 (5) | 0.0041 (4) | 0.0127 (4) | 0.0044 (4) |
| O3 | 0.0266 (5) | 0.0294 (6) | 0.0289 (5) | 0.0017 (4) | 0.0083 (4) | −0.0033 (4) |
| C17 | 0.0238 (7) | 0.0335 (8) | 0.0269 (7) | −0.0013 (6) | 0.0090 (6) | 0.0028 (6) |
| N2 | 0.0279 (6) | 0.0288 (6) | 0.0271 (6) | 0.0006 (5) | 0.0114 (5) | −0.0006 (5) |
| N3 | 0.0231 (6) | 0.0318 (7) | 0.0284 (6) | 0.0076 (5) | 0.0107 (5) | 0.0102 (5) |
| N1 | 0.0277 (6) | 0.0293 (6) | 0.0275 (6) | 0.0005 (5) | 0.0127 (5) | 0.0003 (5) |
| O2 | 0.0292 (6) | 0.0361 (6) | 0.0280 (5) | 0.0013 (5) | 0.0066 (4) | −0.0008 (5) |
| C15 | 0.0342 (8) | 0.0351 (8) | 0.0319 (8) | 0.0044 (7) | 0.0091 (6) | 0.0127 (7) |
| C16 | 0.0312 (8) | 0.0368 (8) | 0.0310 (7) | −0.0031 (6) | 0.0115 (6) | 0.0091 (6) |
| C1 | 0.0311 (7) | 0.0297 (8) | 0.0333 (8) | 0.0039 (6) | 0.0150 (6) | 0.0073 (6) |
| C5 | 0.0255 (7) | 0.0300 (8) | 0.0311 (8) | 0.0052 (6) | 0.0100 (6) | 0.0016 (6) |
| C6 | 0.0301 (7) | 0.0261 (7) | 0.0323 (8) | 0.0024 (6) | 0.0127 (6) | −0.0017 (6) |
| C12 | 0.0341 (8) | 0.0228 (7) | 0.0294 (7) | 0.0023 (6) | 0.0139 (6) | −0.0011 (6) |
| C11 | 0.0295 (7) | 0.0258 (7) | 0.0289 (7) | 0.0065 (6) | 0.0114 (6) | 0.0034 (6) |
| C8 | 0.0245 (7) | 0.0319 (8) | 0.0267 (7) | 0.0056 (6) | 0.0105 (6) | 0.0004 (6) |
| C7 | 0.0256 (7) | 0.0298 (7) | 0.0257 (7) | −0.0016 (6) | 0.0116 (6) | 0.0022 (6) |
| C4 | 0.0264 (7) | 0.0287 (7) | 0.0256 (7) | −0.0005 (6) | 0.0126 (6) | 0.0003 (6) |
| C3 | 0.0297 (7) | 0.0240 (7) | 0.0296 (7) | 0.0006 (6) | 0.0162 (6) | 0.0016 (6) |
| C9 | 0.0272 (7) | 0.0264 (7) | 0.0266 (7) | 0.0044 (6) | 0.0129 (6) | −0.0010 (6) |
| C13 | 0.0272 (7) | 0.0289 (7) | 0.0243 (7) | −0.0008 (6) | 0.0118 (6) | 0.0002 (6) |
| C2 | 0.0265 (7) | 0.0272 (7) | 0.0280 (7) | 0.0011 (6) | 0.0138 (6) | 0.0057 (6) |
| N4 | 0.0275 (6) | 0.0359 (7) | 0.0309 (7) | 0.0074 (5) | 0.0091 (5) | 0.0113 (6) |
| C14 | 0.0220 (6) | 0.0261 (7) | 0.0220 (6) | 0.0002 (5) | 0.0064 (5) | 0.0011 (5) |
| C10 | 0.0236 (7) | 0.0276 (7) | 0.0214 (6) | 0.0013 (5) | 0.0099 (5) | 0.0012 (5) |
| S1—O3 | 1.4299 (11) | C11—C10 | 1.391 (2) |
| S1—O4 | 1.4343 (11) | C8—C9 | 1.384 (2) |
| S1—N3 | 1.6311 (12) | C8—C13 | 1.400 (2) |
| S1—C10 | 1.7647 (15) | C7—C2 | 1.404 (2) |
| O1—C1 | 1.226 (2) | C4—C3 | 1.382 (2) |
| N5—C14 | 1.3362 (19) | C3—C2 | 1.400 (2) |
| N5—C17 | 1.3362 (19) | C9—C10 | 1.392 (2) |
| C17—C16 | 1.379 (2) | C1—O3i | 2.9106 (19) |
| N2—N1 | 1.2558 (18) | C5—H4 | 0.9500 |
| N2—C13 | 1.4285 (19) | N3—H10 | 0.8800 |
| N3—C14 | 1.3857 (19) | C1—H2 | 0.9500 |
| N4—C14 | 1.3289 (19) | C6—H5 | 0.9500 |
| N1—C4 | 1.4250 (19) | C8—H6 | 0.9500 |
| O2—C7 | 1.3420 (18) | C15—H11 | 0.9500 |
| C15—N4 | 1.338 (2) | C16—H12 | 0.9500 |
| C15—C16 | 1.375 (2) | C12—H9 | 0.9500 |
| C1—C2 | 1.455 (2) | O2—H1 | 0.8400 |
| C5—C6 | 1.376 (2) | C11—H8 | 0.9500 |
| C5—C4 | 1.405 (2) | C3—H3 | 0.9500 |
| C6—C7 | 1.396 (2) | C17—H13 | 0.9500 |
| C12—C11 | 1.384 (2) | C9—H7 | 0.9500 |
| C12—C13 | 1.392 (2) | ||
| O3—S1—O4 | 119.02 (7) | C13—C12—H9 | 119.8 |
| O3—S1—N3 | 111.08 (7) | C12—C11—C10 | 118.57 (13) |
| O4—S1—N3 | 103.51 (6) | C12—C11—H8 | 120.7 |
| O3—S1—C10 | 108.31 (7) | C10—C11—H8 | 120.7 |
| O4—S1—C10 | 108.42 (7) | C9—C8—C13 | 119.32 (13) |
| N3—S1—C10 | 105.68 (7) | C9—C8—H6 | 120.3 |
| C14—N5—C17 | 115.89 (13) | C13—C8—H6 | 120.3 |
| N5—C17—C16 | 122.09 (14) | O2—C7—C6 | 117.16 (14) |
| N5—C17—H13 | 119.0 | O2—C7—C2 | 122.97 (13) |
| C16—C17—H13 | 119.0 | C6—C7—C2 | 119.87 (14) |
| N1—N2—C13 | 114.37 (13) | C3—C4—C5 | 119.16 (14) |
| C14—N3—S1 | 126.38 (10) | C3—C4—N1 | 116.95 (13) |
| C14—N3—H10 | 116.8 | C5—C4—N1 | 123.89 (13) |
| S1—N3—H10 | 116.8 | C4—C3—C2 | 120.56 (14) |
| N2—N1—C4 | 112.94 (13) | C4—C3—H3 | 119.7 |
| C7—O2—H1 | 109.5 | C2—C3—H3 | 119.7 |
| N4—C15—C16 | 123.09 (15) | C8—C9—C10 | 119.44 (14) |
| N4—C15—H11 | 118.5 | C8—C9—H7 | 120.3 |
| C16—C15—H11 | 118.5 | C10—C9—H7 | 120.3 |
| C15—C16—C17 | 116.64 (14) | C12—C13—C8 | 120.55 (14) |
| C15—C16—H12 | 121.7 | C12—C13—N2 | 114.57 (13) |
| C17—C16—H12 | 121.7 | C8—C13—N2 | 124.86 (13) |
| O1—C1—C2 | 123.15 (15) | C3—C2—C7 | 119.50 (13) |
| O1—C1—H2 | 118.4 | C3—C2—C1 | 120.14 (14) |
| C2—C1—H2 | 118.4 | C7—C2—C1 | 120.34 (14) |
| C6—C5—C4 | 121.07 (14) | C14—N4—C15 | 115.06 (13) |
| C6—C5—H4 | 119.5 | N4—C14—N5 | 127.19 (14) |
| C4—C5—H4 | 119.5 | N4—C14—N3 | 118.86 (13) |
| C5—C6—C7 | 119.78 (14) | N5—C14—N3 | 113.95 (12) |
| C5—C6—H5 | 120.1 | C11—C10—C9 | 121.71 (13) |
| C7—C6—H5 | 120.1 | C11—C10—S1 | 119.74 (11) |
| C11—C12—C13 | 120.37 (14) | C9—C10—S1 | 118.47 (11) |
| C11—C12—H9 | 119.8 | ||
| C14—N5—C17—C16 | −0.3 (2) | C4—C3—C2—C1 | −178.17 (13) |
| O3—S1—N3—C14 | 46.71 (15) | O2—C7—C2—C3 | −179.94 (13) |
| O4—S1—N3—C14 | 175.57 (13) | C6—C7—C2—C3 | −1.2 (2) |
| C10—S1—N3—C14 | −70.55 (14) | O2—C7—C2—C1 | −1.9 (2) |
| C13—N2—N1—C4 | −179.50 (12) | C6—C7—C2—C1 | 176.90 (14) |
| N4—C15—C16—C17 | −1.1 (3) | O1—C1—C2—C3 | 178.82 (14) |
| N5—C17—C16—C15 | 1.6 (2) | O1—C1—C2—C7 | 0.8 (2) |
| C4—C5—C6—C7 | 1.8 (2) | C16—C15—N4—C14 | −0.6 (2) |
| C13—C12—C11—C10 | 1.9 (2) | C15—N4—C14—N5 | 2.2 (2) |
| C5—C6—C7—O2 | 179.17 (13) | C15—N4—C14—N3 | −178.08 (14) |
| C5—C6—C7—C2 | 0.3 (2) | C17—N5—C14—N4 | −1.7 (2) |
| C6—C5—C4—C3 | −3.0 (2) | C17—N5—C14—N3 | 178.51 (13) |
| C6—C5—C4—N1 | 177.69 (14) | S1—N3—C14—N4 | 2.0 (2) |
| N2—N1—C4—C3 | 174.33 (13) | S1—N3—C14—N5 | −178.19 (11) |
| N2—N1—C4—C5 | −6.4 (2) | C12—C11—C10—C9 | −0.3 (2) |
| C5—C4—C3—C2 | 2.2 (2) | C12—C11—C10—S1 | −177.03 (11) |
| N1—C4—C3—C2 | −178.51 (12) | C8—C9—C10—C11 | −1.2 (2) |
| C13—C8—C9—C10 | 1.1 (2) | C8—C9—C10—S1 | 175.57 (11) |
| C11—C12—C13—C8 | −2.0 (2) | O3—S1—C10—C11 | −165.58 (11) |
| C11—C12—C13—N2 | 179.57 (13) | O4—S1—C10—C11 | 63.96 (13) |
| C9—C8—C13—C12 | 0.4 (2) | N3—S1—C10—C11 | −46.48 (13) |
| C9—C8—C13—N2 | 178.74 (14) | O3—S1—C10—C9 | 17.59 (14) |
| N1—N2—C13—C12 | −177.01 (13) | O4—S1—C10—C9 | −112.87 (12) |
| N1—N2—C13—C8 | 4.6 (2) | N3—S1—C10—C9 | 136.69 (12) |
| C4—C3—C2—C7 | −0.1 (2) |
| H··· | ||||
| O2—H1···O1 | 0.84 | 1.90 | 2.6269 (17) | 145 |
| N3—H10···N5i | 0.88 | 1.98 | 2.8574 (17) | 179 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H1⋯O1 | 0.84 | 1.90 | 2.6269 (17) | 145 |
| N3—H10⋯N5i | 0.88 | 1.98 | 2.8574 (17) | 179 |
Symmetry code: (i) .