Literature DB >> 21201659

7-(Benzyl-sulfan-yl)-5-(2-methoxy-phen-yl)-1,3-dimethyl-5,6-dihydro-pyrimido[4,5-d]pyrimidine-2,4(1H,3H)-dione.

Ayoob Bazgir, Fereshteh Faraji.   

Abstract

In the mol-ecule of the title compound, C(22)H(22)N(4)O(3)S, the benzene and phenyl rings are oriented at a dihedral angle of 88.72 (4)°. The other two rings have flattened-boat conformations. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules.

Entities:  

Year:  2008        PMID: 21201659      PMCID: PMC2960738          DOI: 10.1107/S160053680802401X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Sharma et al. (2004 ▶); Quiroga et al. (2002 ▶); Devi et al. (2003 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring conformation puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C22H22N4O3S M = 422.51 Monoclinic, a = 10.9216 (9) Å b = 8.8528 (5) Å c = 20.7263 (15) Å β = 90.638 (6)° V = 2003.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 294 (2) K 0.4 × 0.3 × 0.05 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.928, T max = 0.985 23191 measured reflections 5394 independent reflections 4510 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.135 S = 1.15 5394 reflections 278 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680802401X/hk2501sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680802401X/hk2501Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H22N4O3SF000 = 888
Mr = 422.51Dx = 1.401 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2175 reflections
a = 10.9216 (9) Åθ = 2.1–29.3º
b = 8.8528 (5) ŵ = 0.20 mm1
c = 20.7263 (15) ÅT = 294 (2) K
β = 90.638 (6)ºPlate, colorless
V = 2003.8 (2) Å30.4 × 0.3 × 0.05 mm
Z = 4
Bruker SMART CCD area-detector diffractometerRint = 0.063
φ and ω scansθmax = 29.3º
Absorption correction: multi-scan(SADABS; Sheldrick, 1998)θmin = 2.1º
Tmin = 0.928, Tmax = 0.985h = −14→15
23191 measured reflectionsk = −11→12
5394 independent reflectionsl = −28→28
4510 reflections with I > 2σ(I)
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.0538P)2 + 0.6815P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.055(Δ/σ)max = 0.038
wR(F2) = 0.135Δρmax = 0.32 e Å3
S = 1.15Δρmin = −0.25 e Å3
5394 reflectionsExtinction correction: none
278 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.34470 (5)0.84201 (5)0.12120 (2)0.04173 (13)
O10.34328 (15)0.11232 (15)−0.03830 (7)0.0508 (4)
O20.32309 (14)0.52289 (16)−0.17071 (6)0.0469 (3)
O30.08733 (11)0.71339 (19)0.00741 (7)0.0502 (4)
N10.33713 (13)0.57943 (16)0.05837 (7)0.0322 (3)
N20.34856 (13)0.34559 (15)0.00770 (7)0.0320 (3)
N30.32991 (14)0.31591 (16)−0.10452 (7)0.0349 (3)
N40.33864 (13)0.80243 (16)−0.00370 (7)0.0326 (3)
H4B0.341 (2)0.898 (3)−0.0043 (11)0.049 (6)*
C10.15207 (19)0.5279 (2)0.18010 (10)0.0459 (4)
H10.19820.46320.15470.055*
C20.0325 (2)0.4896 (3)0.19479 (10)0.0509 (5)
H2−0.00110.40020.1790.061*
C3−0.0368 (2)0.5839 (3)0.23278 (10)0.0526 (5)
H3−0.11690.55820.24290.063*
C40.0136 (2)0.7165 (3)0.25561 (11)0.0592 (6)
H4−0.03280.78070.28110.071*
C50.1329 (2)0.7546 (3)0.24080 (10)0.0525 (5)
H50.16590.84430.25660.063*
C60.20406 (17)0.6607 (2)0.20257 (8)0.0388 (4)
C70.33376 (18)0.7042 (2)0.18617 (9)0.0432 (4)
H7A0.37820.61390.17390.052*
H7B0.37330.74530.22450.052*
C80.33809 (14)0.72697 (18)0.05202 (8)0.0300 (3)
C90.33441 (13)0.50102 (17)0.00128 (8)0.0288 (3)
C100.37101 (17)0.2765 (2)0.07119 (9)0.0382 (4)
H10A0.29420.25320.09090.057*
H10B0.41590.34580.09810.057*
H10C0.41760.18540.0660.057*
C110.34047 (15)0.25006 (18)−0.04476 (9)0.0345 (3)
C120.3234 (2)0.2154 (2)−0.16086 (10)0.0483 (5)
H12A0.37850.1321−0.15460.072*
H12B0.34610.2704−0.19880.072*
H12C0.24140.178−0.1660.072*
C130.32425 (15)0.47335 (19)−0.11530 (8)0.0331 (3)
C140.31967 (14)0.56353 (17)−0.05833 (8)0.0293 (3)
C150.30427 (14)0.73269 (17)−0.06556 (8)0.0287 (3)
H150.36440.7662−0.09730.034*
C160.17931 (14)0.78714 (18)−0.08936 (8)0.0301 (3)
C170.16945 (17)0.8519 (2)−0.15010 (9)0.0378 (4)
H170.23810.8546−0.17620.045*
C180.0604 (2)0.9128 (2)−0.17325 (10)0.0469 (5)
H180.05590.9551−0.21430.056*
C19−0.0411 (2)0.9096 (3)−0.13438 (11)0.0532 (5)
H19−0.11430.9515−0.14910.064*
C20−0.03502 (18)0.8450 (3)−0.07381 (10)0.0493 (5)
H20−0.10410.8439−0.0480.059*
C210.07381 (16)0.7812 (2)−0.05109 (9)0.0371 (4)
C22−0.0178 (2)0.7044 (4)0.04781 (13)0.0771 (9)
H22A−0.05160.80350.05350.116*
H22B0.00570.66360.0890.116*
H22C−0.07810.640.0280.116*
U11U22U33U12U13U23
C10.0512 (11)0.0413 (10)0.0454 (10)0.0063 (8)0.0071 (8)−0.0019 (8)
C20.0550 (12)0.0452 (11)0.0528 (11)−0.0047 (9)0.0061 (9)0.0045 (9)
C30.0478 (11)0.0587 (13)0.0515 (11)0.0019 (10)0.0107 (9)0.0136 (10)
C40.0607 (14)0.0600 (14)0.0573 (13)0.0121 (11)0.0216 (11)−0.0024 (11)
C50.0591 (13)0.0489 (12)0.0495 (11)−0.0002 (9)0.0081 (9)−0.0100 (9)
C60.0425 (9)0.0429 (10)0.0311 (8)0.0043 (7)−0.0013 (7)0.0027 (7)
C70.0402 (9)0.0522 (11)0.0372 (9)0.0014 (8)−0.0051 (7)−0.0013 (8)
C80.0233 (7)0.0286 (7)0.0383 (8)0.0005 (5)0.0010 (6)−0.0006 (6)
C90.0228 (7)0.0239 (7)0.0398 (8)0.0006 (5)0.0039 (6)0.0030 (6)
C100.0377 (9)0.0320 (8)0.0447 (9)0.0034 (7)0.0009 (7)0.0115 (7)
C110.0318 (8)0.0251 (7)0.0467 (9)−0.0018 (6)0.0029 (7)0.0016 (7)
C120.0609 (12)0.0340 (9)0.0501 (11)−0.0013 (9)−0.0015 (9)−0.0085 (8)
C130.0302 (8)0.0285 (7)0.0407 (8)−0.0014 (6)0.0046 (6)0.0017 (7)
C140.0258 (7)0.0242 (7)0.0381 (8)−0.0002 (5)0.0027 (6)0.0029 (6)
C150.0262 (7)0.0242 (7)0.0356 (8)−0.0012 (5)0.0034 (6)0.0052 (6)
C160.0287 (7)0.0246 (7)0.0369 (8)−0.0004 (6)0.0005 (6)0.0034 (6)
C170.0413 (9)0.0327 (8)0.0395 (9)−0.0009 (7)0.0007 (7)0.0054 (7)
C180.0540 (12)0.0421 (10)0.0444 (10)0.0064 (9)−0.0092 (8)0.0101 (8)
C190.0440 (11)0.0559 (12)0.0593 (12)0.0163 (9)−0.0118 (9)0.0057 (10)
C200.0320 (9)0.0632 (13)0.0525 (11)0.0102 (9)0.0007 (8)0.0039 (10)
C210.0303 (8)0.0393 (9)0.0415 (9)0.0023 (7)0.0007 (6)0.0042 (7)
C220.0416 (12)0.127 (3)0.0628 (15)0.0041 (14)0.0173 (10)0.0345 (16)
N10.0338 (7)0.0268 (6)0.0361 (7)0.0024 (5)0.0011 (5)0.0018 (5)
N20.0324 (7)0.0240 (6)0.0396 (7)0.0015 (5)0.0024 (5)0.0056 (5)
N30.0379 (7)0.0257 (7)0.0411 (7)−0.0017 (5)0.0034 (6)−0.0025 (6)
N40.0340 (7)0.0220 (6)0.0418 (8)−0.0020 (5)−0.0016 (6)0.0017 (6)
O10.0688 (10)0.0210 (6)0.0624 (9)−0.0018 (6)−0.0002 (7)0.0037 (6)
O20.0654 (9)0.0384 (7)0.0371 (6)−0.0033 (6)0.0075 (6)0.0023 (6)
O30.0279 (6)0.0759 (10)0.0468 (7)0.0022 (6)0.0057 (5)0.0226 (7)
S10.0468 (3)0.0340 (2)0.0444 (2)−0.00253 (18)0.00230 (19)−0.00687 (18)
N4—H4B0.85 (3)C11—N21.379 (2)
C1—C61.383 (3)C12—N31.469 (2)
C1—C21.387 (3)C12—H12A0.96
C1—H10.93C12—H12B0.96
C2—C31.379 (3)C12—H12C0.96
C2—H20.93C13—O21.229 (2)
C3—C41.378 (4)C13—N31.413 (2)
C3—H30.93C13—C141.427 (2)
C4—C51.383 (3)C14—C151.514 (2)
C4—H40.93C15—N41.468 (2)
C5—C61.392 (3)C15—C161.524 (2)
C5—H50.93C15—H150.98
C6—C71.510 (3)C16—C171.386 (2)
C7—S11.822 (2)C16—C211.407 (2)
C7—H7A0.97C17—C181.388 (3)
C7—H7B0.97C17—H170.93
C8—N11.313 (2)C18—C191.377 (3)
C8—N41.334 (2)C18—H180.93
C8—S11.7596 (17)C19—C201.381 (3)
C9—C141.362 (2)C19—H190.93
C9—N11.372 (2)C20—C211.393 (3)
C9—N21.3908 (19)C20—H200.93
C10—N21.469 (2)C21—O31.359 (2)
C10—H10A0.96C22—O31.431 (2)
C10—H10B0.96C22—H22A0.96
C10—H10C0.96C22—H22B0.96
C11—O11.227 (2)C22—H22C0.96
C11—N31.373 (2)
C6—C1—C2121.20 (19)N3—C13—C14115.02 (14)
C6—C1—H1119.4C9—C14—C13121.24 (14)
C2—C1—H1119.4C9—C14—C15120.24 (14)
C3—C2—C1120.1 (2)C13—C14—C15118.45 (14)
C3—C2—H2120N4—C15—C14107.61 (13)
C1—C2—H2120N4—C15—C16111.66 (13)
C4—C3—C2119.4 (2)C14—C15—C16116.28 (13)
C4—C3—H3120.3N4—C15—H15106.9
C2—C3—H3120.3C14—C15—H15106.9
C3—C4—C5120.4 (2)C16—C15—H15106.9
C3—C4—H4119.8C17—C16—C21118.14 (15)
C5—C4—H4119.8C17—C16—C15119.01 (14)
C4—C5—C6120.9 (2)C21—C16—C15122.79 (14)
C4—C5—H5119.5C16—C17—C18122.16 (17)
C6—C5—H5119.5C16—C17—H17118.9
C1—C6—C5117.99 (19)C18—C17—H17118.9
C1—C6—C7121.56 (17)C19—C18—C17118.85 (18)
C5—C6—C7120.45 (18)C19—C18—H18120.6
C6—C7—S1113.99 (13)C17—C18—H18120.6
C6—C7—H7A108.8C18—C19—C20120.64 (18)
S1—C7—H7A108.8C18—C19—H19119.7
C6—C7—H7B108.8C20—C19—H19119.7
S1—C7—H7B108.8C19—C20—C21120.48 (19)
H7A—C7—H7B107.6C19—C20—H20119.8
N1—C8—N4125.81 (15)C21—C20—H20119.8
N1—C8—S1119.63 (13)O3—C21—C20124.34 (17)
N4—C8—S1114.52 (12)O3—C21—C16115.97 (15)
C14—C9—N1125.32 (14)C20—C21—C16119.68 (17)
C14—C9—N2120.04 (15)O3—C22—H22A109.5
N1—C9—N2114.64 (14)O3—C22—H22B109.5
N2—C10—H10A109.5H22A—C22—H22B109.5
N2—C10—H10B109.5O3—C22—H22C109.5
H10A—C10—H10B109.5H22A—C22—H22C109.5
N2—C10—H10C109.5H22B—C22—H22C109.5
H10A—C10—H10C109.5C8—N1—C9114.65 (14)
H10B—C10—H10C109.5C11—N2—C9121.68 (14)
O1—C11—N3121.48 (17)C11—N2—C10117.34 (14)
O1—C11—N2121.47 (17)C9—N2—C10120.98 (14)
N3—C11—N2117.05 (14)C11—N3—C13124.39 (14)
N3—C12—H12A109.5C11—N3—C12117.56 (15)
N3—C12—H12B109.5C13—N3—C12118.05 (15)
H12A—C12—H12B109.5C8—N4—C15122.81 (14)
N3—C12—H12C109.5C8—N4—H4B120.9 (16)
H12A—C12—H12C109.5C15—N4—H4B114.5 (16)
H12B—C12—H12C109.5C21—O3—C22117.82 (16)
O2—C13—N3119.99 (16)C8—S1—C7102.25 (9)
O2—C13—C14124.99 (16)
C6—C1—C2—C3−0.4 (3)C17—C16—C21—O3178.46 (16)
C1—C2—C3—C40.3 (3)C15—C16—C21—O3−4.6 (3)
C2—C3—C4—C5−0.2 (4)C17—C16—C21—C20−2.5 (3)
C3—C4—C5—C60.2 (4)C15—C16—C21—C20174.39 (17)
C2—C1—C6—C50.4 (3)N4—C8—N1—C9−1.1 (2)
C2—C1—C6—C7−179.27 (18)S1—C8—N1—C9−178.71 (11)
C4—C5—C6—C1−0.2 (3)C14—C9—N1—C8−7.4 (2)
C4—C5—C6—C7179.4 (2)N2—C9—N1—C8172.47 (14)
C1—C6—C7—S1100.2 (2)O1—C11—N2—C9−174.13 (16)
C5—C6—C7—S1−79.5 (2)N3—C11—N2—C96.3 (2)
N1—C9—C14—C13176.78 (15)O1—C11—N2—C105.0 (2)
N2—C9—C14—C13−3.1 (2)N3—C11—N2—C10−174.62 (14)
N1—C9—C14—C15−0.1 (2)C14—C9—N2—C11−4.1 (2)
N2—C9—C14—C15−179.98 (13)N1—C9—N2—C11175.99 (14)
O2—C13—C14—C9−172.94 (17)C14—C9—N2—C10176.78 (15)
N3—C13—C14—C97.4 (2)N1—C9—N2—C10−3.1 (2)
O2—C13—C14—C154.0 (2)O1—C11—N3—C13178.99 (17)
N3—C13—C14—C15−175.67 (14)N2—C11—N3—C13−1.4 (2)
C9—C14—C15—N413.62 (19)O1—C11—N3—C12−0.7 (3)
C13—C14—C15—N4−163.38 (13)N2—C11—N3—C12178.94 (16)
C9—C14—C15—C16−112.44 (17)O2—C13—N3—C11175.12 (16)
C13—C14—C15—C1670.56 (19)C14—C13—N3—C11−5.2 (2)
N4—C15—C16—C17124.18 (16)O2—C13—N3—C12−5.2 (2)
C14—C15—C16—C17−111.82 (17)C14—C13—N3—C12174.47 (15)
N4—C15—C16—C21−52.7 (2)N1—C8—N4—C1517.5 (2)
C14—C15—C16—C2171.3 (2)S1—C8—N4—C15−164.81 (11)
C21—C16—C17—C181.3 (3)C14—C15—N4—C8−21.9 (2)
C15—C16—C17—C18−175.73 (17)C16—C15—N4—C8106.81 (17)
C16—C17—C18—C190.4 (3)C20—C21—O3—C221.3 (3)
C17—C18—C19—C20−1.0 (3)C16—C21—O3—C22−179.8 (2)
C18—C19—C20—C21−0.3 (4)N1—C8—S1—C7−5.17 (15)
C19—C20—C21—O3−179.0 (2)N4—C8—S1—C7176.99 (12)
C19—C20—C21—C162.1 (3)C6—C7—S1—C8−84.81 (15)
D—H···AD—HH···AD···AD—H···A
N4—H4B···O1i0.85 (3)2.02 (3)2.836 (2)161 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4B⋯O1i0.85 (3)2.02 (3)2.836 (2)161 (2)

Symmetry code: (i) .

  2 in total

1.  Synthesis and QSAR studies of pyrimido[4,5-d]pyrimidine-2,5-dione derivatives as potential antimicrobial agents.

Authors:  Pratibha Sharma; Nilesh Rane; V K Gurram
Journal:  Bioorg Med Chem Lett       Date:  2004-08-16       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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