Literature DB >> 21201633

Poly[aqua-[μ-N'-(carboxymethyl)ethylene-diamine--N,N,N'-triacetato]neodymium(III)].

Xiao-Hui Huang, Xiao-Hong Xu, Wei-Bo Pan, Rong-Hua Zeng.   

Abstract

In the title complex, [Nd(C(10)H(13)N(2)O(8))(H(2)O)](n), each Nd(III) ion is coordinated by six O atoms and two N atoms from one N'-(carboxymethyl)ethylene-diamine--N,N,N'-triacetate (edta) ligand and one water mol-ecule, displaying a bicapped trigonal-prismatic geometry. The edta ligands link the neodymium metal centres, forming polymeric chains running along the a axis of the unit cell. These chains are further assembled via inter-molecular O-H⋯O hydrogen-bonding inter-actions into a three-dimensional supra-molecular network.

Entities:  

Year:  2008        PMID: 21201633      PMCID: PMC2960570          DOI: 10.1107/S1600536808026445

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Moulton & Zaworotko (2001 ▶); Zeng et al., (2007 ▶).

Experimental

Crystal data

[Nd(C10H13N2O8)(H2O)] M = 451.48 Orthorhombic, a = 6.6420 (3) Å b = 14.7273 (6) Å c = 26.0161 (10) Å V = 2544.86 (18) Å3 Z = 8 Mo Kα radiation μ = 4.14 mm−1 T = 296 (2) K 0.22 × 0.20 × 0.19 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.42, T max = 0.46 22432 measured reflections 3028 independent reflections 2647 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.041 S = 1.02 3028 reflections 200 parameters 3 restraints H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.55 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808026445/bg2202sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026445/bg2202Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Nd(C10H13N2O8)(H2O)]F000 = 1768
Mr = 451.48Dx = 2.357 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 7620 reflections
a = 6.6420 (3) Åθ = 2.8–27.8º
b = 14.7273 (6) ŵ = 4.14 mm1
c = 26.0161 (10) ÅT = 296 (2) K
V = 2544.86 (18) Å3Block, colourless
Z = 80.22 × 0.20 × 0.19 mm
Bruker APEXII area-detector diffractometer3028 independent reflections
Radiation source: fine-focus sealed tube2647 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.034
T = 296(2) Kθmax = 27.8º
φ and ω scansθmin = 1.6º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −7→8
Tmin = 0.42, Tmax = 0.46k = −19→19
22432 measured reflectionsl = −32→34
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.019H-atom parameters constrained
wR(F2) = 0.041  w = 1/[σ2(Fo2) + (0.016P)2 + 2.21P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.004
3028 reflectionsΔρmax = 0.71 e Å3
200 parametersΔρmin = −0.54 e Å3
3 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Nd11.075731 (17)0.492979 (7)0.420675 (4)0.01307 (4)
C11.2133 (4)0.64721 (15)0.33465 (8)0.0191 (5)
C21.0901 (4)0.71297 (15)0.36663 (9)0.0223 (5)
H2A1.18050.74980.38720.027*
H2B1.01680.75330.34380.027*
C31.0295 (4)0.38164 (15)0.30802 (9)0.0202 (5)
C40.9158 (4)0.46577 (16)0.29163 (9)0.0206 (5)
H4A1.00850.50960.27700.025*
H4B0.81720.45010.26560.025*
C50.5878 (4)0.44098 (15)0.40469 (9)0.0195 (5)
C60.6307 (4)0.45104 (17)0.34798 (9)0.0226 (5)
H6A0.64600.39110.33310.027*
H6B0.51580.47970.33170.027*
C70.9063 (4)0.66244 (15)0.49694 (9)0.0193 (5)
C80.9167 (4)0.71960 (15)0.44896 (9)0.0223 (5)
H8A0.79330.75440.44610.027*
H8B1.02710.76230.45240.027*
C90.7466 (4)0.65605 (15)0.37536 (9)0.0219 (5)
H9A0.69270.71570.36760.026*
H9B0.65420.62640.39890.026*
C100.7579 (4)0.60141 (15)0.32623 (9)0.0213 (5)
H10A0.62830.60310.30910.026*
H10B0.85650.62860.30340.026*
N10.9454 (3)0.66667 (13)0.40105 (7)0.0189 (4)
N20.8145 (3)0.50536 (12)0.33635 (7)0.0186 (4)
O11.2294 (3)0.56652 (10)0.34990 (6)0.0231 (4)
O21.2979 (3)0.67575 (11)0.29451 (6)0.0268 (4)
O31.0728 (3)0.36869 (11)0.35312 (6)0.0257 (4)
O41.0749 (3)0.32789 (12)0.27038 (6)0.0323 (5)
H41.12850.28190.28170.048*
O50.7375 (3)0.43953 (12)0.43463 (6)0.0263 (4)
O60.4103 (3)0.42845 (11)0.41880 (6)0.0240 (4)
O70.9077 (3)0.57641 (11)0.49218 (6)0.0236 (4)
O80.9002 (3)0.70106 (13)0.53946 (6)0.0317 (4)
O1W1.3251 (3)0.60217 (12)0.46245 (7)0.0298 (4)
H1W1.33430.58830.49390.045*
H2W1.35500.65800.46050.045*
U11U22U33U12U13U23
Nd10.01078 (7)0.01511 (7)0.01332 (7)−0.00035 (4)0.00070 (4)0.00100 (4)
C10.0148 (12)0.0235 (11)0.0189 (11)−0.0010 (9)−0.0003 (9)0.0003 (9)
C20.0241 (14)0.0185 (11)0.0243 (12)−0.0013 (10)0.0044 (10)0.0024 (9)
C30.0200 (13)0.0200 (11)0.0208 (12)−0.0005 (9)0.0011 (9)−0.0013 (9)
C40.0230 (13)0.0217 (11)0.0171 (11)0.0025 (10)0.0002 (9)−0.0009 (9)
C50.0170 (13)0.0151 (10)0.0265 (12)0.0008 (9)0.0015 (9)0.0009 (9)
C60.0169 (13)0.0260 (12)0.0249 (13)−0.0037 (10)−0.0012 (10)−0.0012 (10)
C70.0134 (13)0.0227 (11)0.0217 (12)0.0018 (9)0.0020 (9)0.0018 (9)
C80.0290 (15)0.0161 (11)0.0216 (12)0.0032 (10)0.0035 (10)−0.0016 (9)
C90.0184 (13)0.0201 (11)0.0271 (12)0.0046 (9)0.0002 (10)0.0002 (9)
C100.0188 (13)0.0216 (11)0.0236 (12)0.0046 (9)−0.0028 (10)0.0008 (9)
N10.0216 (12)0.0176 (9)0.0176 (10)0.0010 (8)0.0035 (8)−0.0011 (7)
N20.0163 (11)0.0199 (10)0.0197 (10)0.0015 (8)0.0014 (7)−0.0006 (8)
O10.0221 (10)0.0198 (8)0.0274 (9)0.0024 (7)0.0054 (7)0.0043 (7)
O20.0329 (11)0.0240 (8)0.0236 (9)−0.0020 (8)0.0092 (7)0.0018 (7)
O30.0324 (11)0.0245 (9)0.0202 (9)0.0078 (8)−0.0044 (7)−0.0004 (7)
O40.0511 (14)0.0255 (9)0.0204 (9)0.0149 (9)0.0014 (8)−0.0010 (7)
O50.0168 (10)0.0368 (10)0.0252 (9)−0.0068 (8)−0.0041 (7)0.0059 (7)
O60.0149 (9)0.0252 (9)0.0319 (10)−0.0015 (7)0.0027 (7)0.0057 (7)
O70.0273 (10)0.0204 (8)0.0231 (9)0.0058 (7)0.0058 (7)0.0053 (6)
O80.0379 (12)0.0382 (10)0.0191 (9)−0.0007 (9)0.0046 (8)−0.0050 (8)
O1W0.0329 (12)0.0320 (10)0.0247 (10)−0.0054 (8)−0.0035 (8)−0.0016 (7)
Nd1—O12.3675 (16)C5—O51.263 (3)
Nd1—O52.4078 (18)C5—C61.510 (3)
Nd1—O6i2.4173 (17)C6—N21.490 (3)
Nd1—O7ii2.4892 (16)C6—H6A0.9700
Nd1—O72.4932 (16)C6—H6B0.9700
Nd1—O32.5377 (16)C7—O81.245 (3)
Nd1—O1W2.5516 (18)C7—O71.273 (3)
Nd1—N12.7484 (19)C7—C81.507 (3)
Nd1—N22.803 (2)C8—N11.482 (3)
C1—O11.257 (3)C8—H8A0.9700
C1—O21.258 (3)C8—H8B0.9700
C1—C21.517 (3)C9—N11.488 (3)
C2—N11.480 (3)C9—C101.512 (3)
C2—H2A0.9700C9—H9A0.9700
C2—H2B0.9700C9—H9B0.9700
C3—O31.223 (3)C10—N21.487 (3)
C3—O41.295 (3)C10—H10A0.9700
C3—C41.512 (3)C10—H10B0.9700
C4—N21.465 (3)O4—H40.8200
C4—H4A0.9700O1W—H1W0.85
C4—H4B0.9700O1W—H2W0.85
C5—O61.249 (3)
O1—Nd1—O5131.99 (6)O6—C5—O5124.0 (2)
O1—Nd1—O6i76.58 (6)O6—C5—C6118.7 (2)
O5—Nd1—O6i137.07 (6)O5—C5—C6117.1 (2)
O1—Nd1—O7ii151.30 (6)N2—C6—C5113.9 (2)
O5—Nd1—O7ii76.68 (6)N2—C6—H6A108.8
O6i—Nd1—O7ii79.42 (5)C5—C6—H6A108.8
O1—Nd1—O7123.22 (5)N2—C6—H6B108.8
O5—Nd1—O768.35 (6)C5—C6—H6B108.8
O6i—Nd1—O7128.34 (6)H6A—C6—H6B107.7
O7ii—Nd1—O762.77 (6)O8—C7—O7122.8 (2)
O1—Nd1—O378.15 (6)O8—C7—C8118.8 (2)
O5—Nd1—O382.04 (6)O7—C7—C8118.4 (2)
O6i—Nd1—O373.11 (6)N1—C8—C7114.11 (18)
O7ii—Nd1—O3109.57 (5)N1—C8—H8A108.7
O7—Nd1—O3150.33 (6)C7—C8—H8A108.7
O1—Nd1—O1W76.31 (6)N1—C8—H8B108.7
O5—Nd1—O1W138.37 (6)C7—C8—H8B108.7
O6i—Nd1—O1W70.10 (6)H8A—C8—H8B107.6
O7ii—Nd1—O1W80.92 (6)N1—C9—C10113.05 (19)
O7—Nd1—O1W70.25 (6)N1—C9—H9A109.0
O3—Nd1—O1W138.98 (6)C10—C9—H9A109.0
O1—Nd1—N164.25 (6)N1—C9—H9B109.0
O5—Nd1—N192.20 (6)C10—C9—H9B109.0
O6i—Nd1—N1130.67 (6)H9A—C9—H9B107.8
O7ii—Nd1—N1124.42 (5)N2—C10—C9111.66 (18)
O7—Nd1—N162.54 (5)N2—C10—H10A109.3
O3—Nd1—N1122.70 (5)C9—C10—H10A109.3
O1W—Nd1—N172.37 (6)N2—C10—H10B109.3
O1—Nd1—N268.18 (6)C9—C10—H10B109.3
O5—Nd1—N264.01 (6)H10A—C10—H10B107.9
O6i—Nd1—N2125.37 (6)C2—N1—C8110.47 (18)
O7ii—Nd1—N2140.07 (6)C2—N1—C9110.66 (19)
O7—Nd1—N2105.96 (6)C8—N1—C9108.61 (18)
O3—Nd1—N260.01 (5)C2—N1—Nd1109.67 (13)
O1W—Nd1—N2133.97 (5)C8—N1—Nd1111.94 (13)
N1—Nd1—N266.36 (5)C9—N1—Nd1105.38 (13)
O1—C1—O2122.7 (2)C4—N2—C10110.73 (18)
O1—C1—C2118.4 (2)C4—N2—C6108.90 (18)
O2—C1—C2118.9 (2)C10—N2—C6109.86 (19)
N1—C2—C1112.84 (18)C4—N2—Nd1108.14 (14)
N1—C2—H2A109.0C10—N2—Nd1110.90 (13)
C1—C2—H2A109.0C6—N2—Nd1108.24 (13)
N1—C2—H2B109.0C1—O1—Nd1129.88 (15)
C1—C2—H2B109.0C3—O3—Nd1123.62 (15)
H2A—C2—H2B107.8C3—O4—H4109.5
O3—C3—O4125.1 (2)C5—O5—Nd1129.48 (15)
O3—C3—C4121.0 (2)C5—O6—Nd1iii144.68 (15)
O4—C3—C4113.8 (2)C7—O7—Nd1ii108.69 (14)
N2—C4—C3109.35 (18)C7—O7—Nd1124.50 (14)
N2—C4—H4A109.8Nd1ii—O7—Nd1117.23 (6)
C3—C4—H4A109.8Nd1—O1W—H1W107.9
N2—C4—H4B109.8Nd1—O1W—H2W137.6
C3—C4—H4B109.8H1W—O1W—H2W105.9
H4A—C4—H4B108.3
D—H···AD—HH···AD···AD—H···A
O1W—H2W···O8iv0.852.102.941 (3)174
O1W—H1W···O5ii0.851.962.778 (2)162
O4—H4···O2v0.821.672.475 (2)166
Table 1

Selected bond lengths (Å)

Nd1—O12.3675 (16)
Nd1—O52.4078 (18)
Nd1—O6i2.4173 (17)
Nd1—O7ii2.4892 (16)
Nd1—O72.4932 (16)
Nd1—O32.5377 (16)
Nd1—O1W2.5516 (18)
Nd1—N12.7484 (19)
Nd1—N22.803 (2)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2W⋯O8iii0.852.102.941 (3)174
O1W—H1W⋯O5ii0.851.962.778 (2)162
O4—H4⋯O2iv0.821.672.475 (2)166

Symmetry codes: (ii) ; (iii) ; (iv) .

  2 in total

1.  From molecules to crystal engineering: supramolecular isomerism and polymorphism in network solids.

Authors:  B Moulton; M J Zaworotko
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  Poly[aqua-[μ(3)-N'-(carboxy-meth-yl)ethyl-ene-diamine-N,N,N'-triacetato]samarium(III)].

Authors:  Guo-Yong Zhou; Gui-Rong Wu; Zhi-Yong Deng; Xing-Tian Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-30
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.