Literature DB >> 21201624

{5,5'-Dihydr-oxy-2,2'-[o-phenyl-enebis-(nitrilo-methyl-idyne)]diphenolato}nickel(II) dihydrate.

Hoong-Kun Fun, Reza Kia, Valiollah Mirkhani, Hasan Zargoshi.   

Abstract

In the title complex, [Ni(C(20)H(14)N(2)O(4))]·2H(2)O, the Ni(II) ion is in an essentially square-planar geometry involving an N(2)O(2) atom set of the tetra-dentate Schiff base ligand. The Ni atom lies on a crystallographic twofold rotation axis. The asymmetric unit contains one half-mol-ecule of the complex and a water mol-ecule. An inter-molecular O-H⋯O hydrogen bond forms a four-membered ring, producing an R(1) (2)(4) ring motif involving a bifurcated hydrogen bond to the phenolate O atoms of the complex mol-ecule. In the crystal structure, mol-ecules are linked by π-π stacking inter-actions, with centroid-centroid distances in the range 3.5750 (11)-3.7750 (11) Å. As a result of the twofold symmetry, the central benzene ring makes the same dihedral angle of 15.75 (9)° with the two outer benzene rings. The dihedral angle between the two hydroxy-phenyl rings is 13.16 (5)°. In the crystal structure, mol-ecules are linked into infinite one-dimensional chains by directed four-membered O-H⋯O-H inter-actions along the c axis and are further connected by C-H⋯O and π-π stacking into a three-dimensional network. An inter-esting feature of the crystal structure is the short Ni⋯O, O⋯O and N⋯N inter-actions which are shorter than the sum of the van der Waals radii of the relevant atoms. The crystal structure is stabilized by inter-molecular O-H⋯O and C-H⋯O hydrogen bonds and by π-π stacking inter-actions.

Entities:  

Year:  2008        PMID: 21201624      PMCID: PMC2960688          DOI: 10.1107/S1600536808026093

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see, for example: Clark et al. (1968 ▶, 1969 ▶, 1970 ▶); Hodgson 1975 ▶. For applications and bioactivities, see, for example: Elmali et al. (2000 ▶); Blower (1998 ▶); Granovski et al. (1993 ▶); Li & Chang (1991 ▶); Shahrokhian et al. (2000 ▶); Fun & Kia (2008 ▶).

Experimental

Crystal data

[Ni(C20H14N2O4)]·2H2O M = 441.07 Monoclinic, a = 10.9049 (2) Å b = 17.6602 (3) Å c = 9.0375 (3) Å β = 101.150 (1)° V = 1707.61 (7) Å3 Z = 4 Mo Kα radiation μ = 1.18 mm−1 T = 100.0 (1) K 0.35 × 0.12 × 0.11 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.683, T max = 0.881 14574 measured reflections 3566 independent reflections 2388 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.120 S = 1.12 3566 reflections 136 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.61 e Å−3 Δρmin = −0.73 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026093/pk2114sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026093/pk2114Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C20H14N2O4)]·2H2OF000 = 912
Mr = 441.07Dx = 1.716 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3113 reflections
a = 10.9049 (2) Åθ = 2.3–29.1º
b = 17.6602 (3) ŵ = 1.18 mm1
c = 9.0375 (3) ÅT = 100.0 (1) K
β = 101.150 (1)ºBlock, red
V = 1707.61 (7) Å30.35 × 0.12 × 0.11 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3566 independent reflections
Radiation source: fine-focus sealed tube2388 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.046
T = 100.0(1) Kθmax = 34.3º
φ and ω scansθmin = 2.2º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −17→17
Tmin = 0.683, Tmax = 0.881k = −23→27
14574 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.121  w = 1/[σ2(Fo2) + (0.0492P)2] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
3566 reflectionsΔρmax = 0.61 e Å3
136 parametersΔρmin = −0.73 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cryosystem Cobra low-temperature attachment
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.246535 (17)0.75000.01493 (11)
O10.04391 (12)0.32501 (7)0.88434 (14)0.0174 (3)
O20.18665 (13)0.44913 (8)1.35074 (15)0.0215 (3)
N10.06039 (14)0.17016 (8)0.88409 (17)0.0152 (3)
C10.09715 (16)0.32009 (10)1.0287 (2)0.0159 (4)
C20.11546 (17)0.38691 (10)1.1132 (2)0.0175 (4)
H2A0.09080.43291.06680.021*
C30.16965 (17)0.38546 (10)1.2647 (2)0.0161 (4)
C40.21006 (17)0.31684 (11)1.3364 (2)0.0200 (4)
H4A0.24740.31601.43800.024*
C50.1937 (2)0.25113 (10)1.2545 (2)0.0192 (4)
H5A0.22180.20581.30150.023*
C60.13518 (18)0.25029 (10)1.1002 (2)0.0160 (3)
C70.11768 (17)0.17979 (10)1.0251 (2)0.0172 (4)
H7A0.14900.13691.07930.021*
C80.03852 (17)0.09645 (10)0.8211 (2)0.0181 (4)
C90.08370 (18)0.02822 (10)0.8878 (2)0.0206 (4)
H9A0.14040.02810.97900.025*
C100.04344 (18)−0.03919 (11)0.8171 (2)0.0232 (4)
H10A0.0748−0.08490.85980.028*
O1W0.15531 (13)0.42836 (7)0.67062 (15)0.0240 (3)
H1W10.09710.39500.67740.036*
H2W10.16300.43800.58290.036*
H1O20.170 (2)0.4836 (15)1.304 (3)0.047 (9)*
U11U22U33U12U13U23
Ni10.01935 (18)0.01096 (18)0.01281 (16)0.000−0.00102 (12)0.000
O10.0240 (7)0.0128 (6)0.0126 (6)0.0004 (5)−0.0033 (5)−0.0004 (5)
O20.0320 (8)0.0146 (7)0.0156 (6)−0.0001 (6)−0.0007 (6)−0.0040 (6)
N10.0177 (7)0.0109 (7)0.0161 (7)−0.0006 (6)0.0012 (6)−0.0003 (6)
C10.0189 (8)0.0149 (9)0.0129 (8)0.0002 (7)0.0002 (7)0.0020 (7)
C20.0201 (9)0.0156 (9)0.0148 (8)−0.0007 (7)−0.0012 (7)0.0009 (7)
C30.0192 (9)0.0142 (9)0.0145 (8)−0.0009 (7)0.0020 (7)−0.0020 (7)
C40.0260 (10)0.0209 (10)0.0111 (8)0.0015 (8)−0.0011 (7)0.0013 (7)
C50.0256 (10)0.0168 (9)0.0139 (8)0.0010 (7)0.0006 (7)0.0047 (7)
C60.0189 (8)0.0154 (9)0.0126 (7)−0.0004 (7)0.0004 (6)0.0010 (7)
C70.0215 (9)0.0132 (9)0.0158 (8)0.0007 (7)0.0009 (7)0.0040 (7)
C80.0192 (9)0.0151 (9)0.0188 (9)0.0006 (7)0.0011 (7)0.0016 (7)
C90.0224 (9)0.0173 (9)0.0207 (9)0.0005 (8)0.0007 (7)0.0022 (8)
C100.0293 (11)0.0153 (9)0.0252 (10)0.0014 (8)0.0055 (8)0.0039 (8)
O1W0.0312 (8)0.0175 (7)0.0232 (7)−0.0055 (6)0.0050 (6)0.0009 (6)
Ni1—O11.8436 (12)C4—C51.369 (3)
Ni1—O1i1.8436 (12)C4—H4A0.9300
Ni1—N1i1.8474 (15)C5—C61.417 (3)
Ni1—N11.8474 (15)C5—H5A0.9300
O1—C11.324 (2)C6—C71.414 (2)
O2—C31.359 (2)C7—H7A0.9300
O2—H1O20.74 (3)C8—C8i1.392 (4)
N1—C71.317 (2)C8—C91.394 (2)
N1—C81.422 (2)C9—C101.382 (3)
C1—C21.399 (2)C9—H9A0.9300
C1—C61.416 (2)C10—C10i1.387 (4)
C2—C31.383 (2)C10—H10A0.9300
C2—H2A0.9300O1W—H1W10.8771
C3—C41.404 (3)O1W—H2W10.8309
Cg1···Cg4ii3.7364 (11)Cg4···Cg4v3.7750 (11)
Cg2···Cg2ii3.7380 (9)Ni1···O1Wi3.7635 (13)
Cg2···Cg3iii3.7381 (9)O1···O1i2.4319 (18)
Cg3···Cg4iv3.5766 (10)N1···N1i2.525 (2)
O1—Ni1—O1i82.53 (8)C5—C4—H4A120.5
O1—Ni1—N1i174.29 (5)C3—C4—H4A120.5
O1i—Ni1—N1i95.89 (7)C4—C5—C6121.82 (17)
O1—Ni1—N195.89 (7)C4—C5—H5A119.1
O1i—Ni1—N1174.29 (6)C6—C5—H5A119.1
N1i—Ni1—N186.21 (9)C7—C6—C1123.15 (17)
C1—O1—Ni1127.44 (11)C7—C6—C5118.38 (16)
C3—O2—H1O2111 (2)C1—C6—C5118.47 (16)
C7—N1—C8121.12 (15)N1—C7—C6124.97 (17)
C7—N1—Ni1125.63 (13)N1—C7—H7A117.5
C8—N1—Ni1113.24 (12)C6—C7—H7A117.5
O1—C1—C2118.13 (16)C8i—C8—C9119.92 (11)
O1—C1—C6122.74 (16)C8i—C8—N1113.20 (9)
C2—C1—C6119.12 (17)C9—C8—N1126.87 (17)
C3—C2—C1120.89 (17)C10—C9—C8119.37 (18)
C3—C2—H2A119.6C10—C9—H9A120.3
C1—C2—H2A119.6C8—C9—H9A120.3
O2—C3—C2122.42 (17)C9—C10—C10i120.43 (11)
O2—C3—C4117.00 (16)C9—C10—H10A119.8
C2—C3—C4120.59 (17)C10i—C10—H10A119.8
C5—C4—C3119.06 (17)H1W1—O1W—H2W1114.3
O1i—Ni1—O1—C1−176.47 (18)O1—C1—C6—C5178.70 (17)
N1i—Ni1—N1—C7−176.59 (19)C2—C1—C6—C5−1.7 (3)
O1—Ni1—N1—C8177.60 (12)C4—C5—C6—C7−177.71 (18)
N1i—Ni1—N1—C82.93 (9)C4—C5—C6—C12.4 (3)
Ni1—O1—C1—C2−176.01 (12)C8—N1—C7—C6−175.09 (17)
Ni1—O1—C1—C63.6 (3)Ni1—N1—C7—C64.4 (3)
O1—C1—C2—C3179.49 (17)C1—C6—C7—N1−3.0 (3)
C6—C1—C2—C3−0.1 (3)C5—C6—C7—N1177.10 (18)
C1—C2—C3—O2−178.73 (16)C7—N1—C8—C8i171.2 (2)
C1—C2—C3—C41.4 (3)Ni1—N1—C8—C8i−8.3 (3)
O2—C3—C4—C5179.35 (17)C7—N1—C8—C9−7.6 (3)
C2—C3—C4—C5−0.8 (3)Ni1—N1—C8—C9172.86 (16)
C3—C4—C5—C6−1.1 (3)C8i—C8—C9—C10−5.1 (3)
O1—C1—C6—C7−1.2 (3)N1—C8—C9—C10173.65 (18)
C2—C1—C6—C7178.37 (17)C8—C9—C10—C10i−1.6 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O10.882.403.0733 (18)133
O1W—H1W1···O1i0.881.972.8072 (19)160
O1W—H2W1···O2vi0.832.172.9985 (19)173
C9—H9A···O2vii0.932.603.394 (2)144
Table 1

Selected interatomic distances (Å)

Cg1, Cg2, Cg3, and Cg4 are the centroids of the Ni1/N1/C8/C8A/N1A, Ni1/O1/C1/C6/C7/N1, Ni1/O1A/C1A/C6A/C7A/N1A and C1–C6 rings, respectively.

Cg1⋯Cg4i3.7364 (11)
Cg2⋯Cg2i3.7380 (9)
Cg2⋯Cg3ii3.7381 (9)
Cg3⋯Cg4iii3.5766 (10)
Cg4⋯Cg4iv3.7750 (11)
Ni1⋯O1Wv3.7635 (13)
O1⋯O1v2.4319 (18)
N1⋯N1v2.525 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O10.882.403.0733 (18)133
O1W—H1W1⋯O1v0.881.972.8072 (19)160
O1W—H2W1⋯O2vi0.832.172.9985 (19)173
C9—H9A⋯O2vii0.932.603.394 (2)144

Symmetry codes: (v) ; (vi) ; (vii) .

  5 in total

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Authors: 
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2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Salicylate-selective electrodes based on AI(III) and Sn(IV) salophens

Authors: 
Journal:  Anal Chem       Date:  2000-03-01       Impact factor: 6.986

4.  {4,4',5,5'-Tetra-methyl-2,2'-[1,1'-(ethane-1,2-diyldinitrilo)diethyl-idyne]diphenolato}nickel(II)-methanol-chloro-form (1/1/1).

Authors:  Hoong-Kun Fun; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

5.  {4,4'-Dimeth-oxy-2,2'-[1,1'-(ethane-1,2-diyldinitrilo)diethyl-idyne]diphenolato}nickel(II) hemihydrate.

Authors:  Hoong-Kun Fun; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31
  5 in total
  1 in total

1.  Crystal structure, Hirshfeld surface analysis and anti-oxidant capacity of 2,2'-{(1E,1'E)-[1,2-phenyl-enebis(aza-nylyl-idene)]bis-(methanylyl-idene)}bis-(5-benz-yloxy)phenol.

Authors:  Nadir Ghichi; Ali Benboudiaf; Yacine DJebli; Chawki Bensouici; Hocine Merazig
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-04-19
  1 in total

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