Literature DB >> 21201517

N-(1-Acetyl-r-7,c-9-diphenyl-4,8-dithia-1,2-diaza-spiro-[5.4]dec-2-en-3-yl)acet-amide.

D Gayathri, D Velmurugan, S Umamatheswari, S Kabilan, K Ravikumar.   

Abstract

In the title compound, C(22)H(23)N(3)O(2)S(2), the five-membered ring is planar and the C(5)S ring adopts a chair conformation. The crystal packing is stabilized by inter-molecular N-H⋯O and C-H⋯O inter-actions, generating a chain and a centrosymmetric dimer, respectively.

Entities:  

Year:  2008        PMID: 21201517      PMCID: PMC2960219          DOI: 10.1107/S1600536808001025

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Allen et al. (1987 ▶); Isaac et al. (2003 ▶); Pan et al. (2003 ▶); Jung et al. (2004 ▶); Foroumadi et al. (2002 ▶); Jalilian et al. (2002 ▶); Leung-Toung et al. (2003 ▶); Schmidt et al. (1970 ▶); Cremer & Pople (1975 ▶); Nardelli (1983 ▶); Singh et al. (2003 ▶).

Experimental

Crystal data

C22H23N3O2S2 M = 425.55 Monoclinic, a = 12.3310 (7) Å b = 16.0218 (9) Å c = 12.3852 (7) Å β = 116.714 (1)° V = 2185.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 293 (2) K 0.25 × 0.24 × 0.22 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: none 24434 measured reflections 5139 independent reflections 4587 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.116 S = 0.97 5139 reflections 264 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808001025/at2527sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808001025/at2527Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H23N3O2S2F000 = 896
Mr = 425.55Dx = 1.293 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2504 reflections
a = 12.3310 (7) Åθ = 1.9–28.0º
b = 16.0218 (9) ŵ = 0.27 mm1
c = 12.3852 (7) ÅT = 293 (2) K
β = 116.714 (1)ºBlock, colourless
V = 2185.7 (2) Å30.25 × 0.24 × 0.22 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer4587 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
Monochromator: graphiteθmax = 28.0º
T = 293(2) Kθmin = 1.9º
ω scansh = −15→15
Absorption correction: nonek = −21→21
24434 measured reflectionsl = −16→16
5139 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.116  w = 1/[σ2(Fo2) + (0.0759P)2 + 0.4937P] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max = 0.031
5139 reflectionsΔρmax = 0.31 e Å3
264 parametersΔρmin = −0.17 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.81098 (11)0.05407 (8)0.11215 (12)0.0408 (3)
H10.83860.01880.18440.049*
C20.91557 (11)0.11046 (8)0.12512 (12)0.0409 (3)
H2A0.88720.14900.05750.049*
H2B0.97940.07660.12210.049*
C30.96801 (10)0.16028 (8)0.24349 (11)0.0377 (3)
C40.87477 (11)0.21761 (8)0.25620 (12)0.0405 (3)
H4A0.91350.24560.33380.049*
H4B0.84990.26010.19380.049*
C50.76159 (11)0.17236 (8)0.24675 (12)0.0403 (3)
H50.78630.13150.31240.048*
C60.67241 (12)0.23270 (8)0.25743 (12)0.0418 (3)
C70.64638 (16)0.22878 (12)0.35475 (15)0.0586 (4)
H70.68340.18860.41430.070*
C80.5648 (2)0.28496 (14)0.36371 (19)0.0752 (5)
H80.54710.28180.42910.090*
C90.51035 (17)0.34484 (12)0.2773 (2)0.0690 (5)
H90.45710.38270.28500.083*
C100.53404 (16)0.34912 (11)0.17975 (19)0.0632 (4)
H100.49630.38930.12030.076*
C110.61498 (15)0.29289 (10)0.17013 (16)0.0538 (4)
H110.63090.29580.10360.065*
C120.76348 (11)−0.00201 (8)0.00198 (13)0.0448 (3)
C130.68438 (16)−0.06649 (11)−0.00790 (18)0.0625 (4)
H130.6616−0.07490.05340.075*
C140.63888 (17)−0.11863 (11)−0.1084 (2)0.0719 (5)
H140.5863−0.1617−0.11350.086*
C150.67076 (16)−0.10715 (11)−0.19984 (19)0.0681 (5)
H150.6392−0.1416−0.26750.082*
C160.74988 (18)−0.04419 (12)−0.19032 (18)0.0693 (5)
H160.7728−0.0364−0.25160.083*
C170.79604 (16)0.00785 (10)−0.09063 (15)0.0578 (4)
H170.84980.0501−0.08570.069*
C181.07172 (12)0.27042 (8)0.17789 (12)0.0411 (3)
C191.18800 (14)0.31368 (11)0.20301 (17)0.0606 (4)
H19A1.23960.27640.18650.091*
H19B1.22790.33030.28630.091*
H19C1.17110.36210.15240.091*
C201.17574 (11)0.13205 (8)0.41606 (11)0.0382 (3)
C211.28104 (14)0.04085 (11)0.58940 (16)0.0602 (4)
C221.40213 (17)0.02732 (16)0.6959 (2)0.0910 (8)
H22A1.39100.00010.75930.137*
H22B1.44120.08020.72440.137*
H22C1.4517−0.00700.67230.137*
N11.07548 (9)0.21007 (7)0.25605 (9)0.0385 (2)
N21.18656 (9)0.19210 (7)0.35415 (10)0.0391 (2)
N31.27755 (10)0.10526 (8)0.51668 (10)0.0459 (3)
H31.34430.13160.53480.055*
S10.68373 (3)0.11763 (2)0.10259 (3)0.04552 (11)
S21.03376 (3)0.08660 (2)0.37248 (3)0.04760 (12)
O10.97614 (9)0.28782 (7)0.08854 (9)0.0496 (2)
O21.19260 (12)−0.00139 (10)0.56887 (15)0.0911 (5)
U11U22U33U12U13U23
C10.0315 (6)0.0393 (6)0.0463 (6)−0.0006 (5)0.0128 (5)−0.0023 (5)
C20.0295 (6)0.0440 (7)0.0462 (7)−0.0014 (5)0.0144 (5)−0.0066 (5)
C30.0275 (5)0.0391 (6)0.0415 (6)−0.0027 (4)0.0111 (5)−0.0001 (5)
C40.0334 (6)0.0417 (6)0.0454 (6)−0.0017 (5)0.0169 (5)−0.0033 (5)
C50.0356 (6)0.0420 (6)0.0441 (6)−0.0007 (5)0.0187 (5)0.0010 (5)
C60.0362 (6)0.0436 (6)0.0495 (7)−0.0049 (5)0.0228 (5)−0.0037 (5)
C70.0614 (9)0.0688 (10)0.0551 (8)−0.0016 (8)0.0347 (8)−0.0018 (7)
C80.0779 (12)0.0931 (14)0.0782 (12)−0.0035 (11)0.0560 (11)−0.0175 (11)
C90.0560 (9)0.0644 (10)0.1010 (14)−0.0014 (8)0.0481 (10)−0.0211 (10)
C100.0539 (9)0.0514 (9)0.0889 (12)0.0088 (7)0.0362 (9)0.0020 (8)
C110.0528 (8)0.0531 (8)0.0657 (9)0.0082 (6)0.0358 (7)0.0066 (7)
C120.0320 (6)0.0397 (6)0.0537 (7)0.0014 (5)0.0113 (5)−0.0061 (5)
C130.0533 (9)0.0579 (9)0.0740 (10)−0.0153 (7)0.0267 (8)−0.0141 (8)
C140.0498 (9)0.0556 (10)0.0958 (14)−0.0159 (7)0.0200 (9)−0.0223 (9)
C150.0498 (9)0.0622 (10)0.0776 (11)0.0029 (7)0.0156 (8)−0.0305 (9)
C160.0708 (11)0.0702 (11)0.0666 (10)−0.0030 (9)0.0305 (9)−0.0223 (9)
C170.0576 (9)0.0522 (8)0.0635 (9)−0.0072 (7)0.0272 (8)−0.0143 (7)
C180.0370 (6)0.0392 (6)0.0463 (6)0.0018 (5)0.0180 (5)0.0003 (5)
C190.0461 (8)0.0560 (9)0.0721 (10)−0.0088 (7)0.0198 (7)0.0140 (7)
C200.0289 (5)0.0389 (6)0.0415 (6)−0.0018 (4)0.0111 (5)−0.0034 (5)
C210.0413 (7)0.0576 (9)0.0678 (10)0.0010 (6)0.0121 (7)0.0199 (7)
C220.0484 (9)0.1010 (16)0.0918 (14)−0.0008 (10)0.0032 (9)0.0505 (13)
N10.0269 (5)0.0415 (5)0.0417 (5)−0.0022 (4)0.0107 (4)0.0011 (4)
N20.0278 (5)0.0422 (5)0.0402 (5)−0.0023 (4)0.0089 (4)−0.0015 (4)
N30.0308 (5)0.0494 (6)0.0463 (6)−0.0035 (4)0.0073 (4)0.0060 (5)
S10.02991 (17)0.0501 (2)0.0527 (2)−0.00154 (12)0.01512 (14)−0.00724 (14)
S20.03201 (17)0.0476 (2)0.0523 (2)−0.00652 (12)0.00926 (14)0.00873 (14)
O10.0386 (5)0.0543 (6)0.0509 (5)0.0070 (4)0.0156 (4)0.0104 (4)
O20.0511 (7)0.0829 (9)0.1081 (11)−0.0123 (6)0.0081 (7)0.0488 (8)
C1—C121.5145 (18)C12—C131.388 (2)
C1—C21.5228 (17)C13—C141.391 (3)
C1—S11.8292 (13)C13—H130.9300
C1—H10.9800C14—C151.368 (3)
C2—C31.5337 (17)C14—H140.9300
C2—H2A0.9700C15—C161.371 (3)
C2—H2B0.9700C15—H150.9300
C3—N11.4937 (15)C16—C171.383 (2)
C3—C41.5341 (17)C16—H160.9300
C3—S21.8543 (13)C17—H170.9300
C4—C51.5297 (17)C18—O11.2324 (16)
C4—H4A0.9700C18—N11.3541 (17)
C4—H4B0.9700C18—C191.4941 (19)
C5—C61.5140 (18)C19—H19A0.9600
C5—S11.8268 (13)C19—H19B0.9600
C5—H50.9800C19—H19C0.9600
C6—C111.383 (2)C20—N21.2742 (17)
C6—C71.3811 (19)C20—N31.3808 (16)
C7—C81.391 (3)C20—S21.7427 (12)
C7—H70.9300C21—O21.209 (2)
C8—C91.368 (3)C21—N31.3577 (19)
C8—H80.9300C21—C221.499 (2)
C9—C101.366 (3)C22—H22A0.9600
C9—H90.9300C22—H22B0.9600
C10—C111.389 (2)C22—H22C0.9600
C10—H100.9300N1—N21.3924 (14)
C11—H110.9300N3—H30.8600
C12—C171.384 (2)
C12—C1—C2114.40 (11)C17—C12—C13117.78 (14)
C12—C1—S1107.39 (8)C17—C12—C1122.70 (12)
C2—C1—S1109.74 (9)C13—C12—C1119.52 (14)
C12—C1—H1108.4C12—C13—C14120.71 (17)
C2—C1—H1108.4C12—C13—H13119.6
S1—C1—H1108.4C14—C13—H13119.6
C1—C2—C3112.51 (11)C15—C14—C13120.66 (16)
C1—C2—H2A109.1C15—C14—H14119.7
C3—C2—H2A109.1C13—C14—H14119.7
C1—C2—H2B109.1C14—C15—C16119.07 (16)
C3—C2—H2B109.1C14—C15—H15120.5
H2A—C2—H2B107.8C16—C15—H15120.5
N1—C3—C4109.89 (10)C15—C16—C17120.78 (18)
N1—C3—C2110.53 (10)C15—C16—H16119.6
C4—C3—C2113.35 (10)C17—C16—H16119.6
N1—C3—S2103.09 (8)C16—C17—C12120.99 (16)
C4—C3—S2110.51 (9)C16—C17—H17119.5
C2—C3—S2108.99 (9)C12—C17—H17119.5
C5—C4—C3114.11 (10)O1—C18—N1121.01 (12)
C5—C4—H4A108.7O1—C18—C19121.52 (13)
C3—C4—H4A108.7N1—C18—C19117.46 (12)
C5—C4—H4B108.7C18—C19—H19A109.5
C3—C4—H4B108.7C18—C19—H19B109.5
H4A—C4—H4B107.6H19A—C19—H19B109.5
C6—C5—C4111.36 (11)C18—C19—H19C109.5
C6—C5—S1107.98 (9)H19A—C19—H19C109.5
C4—C5—S1111.28 (9)H19B—C19—H19C109.5
C6—C5—H5108.7N2—C20—N3118.63 (11)
C4—C5—H5108.7N2—C20—S2119.44 (9)
S1—C5—H5108.7N3—C20—S2121.93 (10)
C11—C6—C7118.41 (14)O2—C21—N3121.95 (14)
C11—C6—C5120.91 (12)O2—C21—C22123.48 (16)
C7—C6—C5120.67 (13)N3—C21—C22114.57 (14)
C6—C7—C8120.03 (17)C21—C22—H22A109.5
C6—C7—H7120.0C21—C22—H22B109.5
C8—C7—H7120.0H22A—C22—H22B109.5
C9—C8—C7120.65 (16)C21—C22—H22C109.5
C9—C8—H8119.7H22A—C22—H22C109.5
C7—C8—H8119.7H22B—C22—H22C109.5
C8—C9—C10120.14 (16)C18—N1—N2118.39 (10)
C8—C9—H9119.9C18—N1—C3124.27 (10)
C10—C9—H9119.9N2—N1—C3117.33 (10)
C9—C10—C11119.39 (17)C20—N2—N1110.68 (10)
C9—C10—H10120.3C21—N3—C20125.43 (12)
C11—C10—H10120.3C21—N3—H3117.3
C6—C11—C10121.36 (15)C20—N3—H3117.3
C6—C11—H11119.3C5—S1—C198.36 (6)
C10—C11—H11119.3C20—S2—C389.43 (6)
C12—C1—C2—C3−174.88 (10)C15—C16—C17—C12−0.2 (3)
S1—C1—C2—C364.36 (12)C13—C12—C17—C160.9 (2)
C1—C2—C3—N1176.11 (10)C1—C12—C17—C16−179.42 (15)
C1—C2—C3—C4−60.01 (14)O1—C18—N1—N2178.81 (12)
C1—C2—C3—S263.50 (12)C19—C18—N1—N2−0.07 (18)
N1—C3—C4—C5−179.06 (10)O1—C18—N1—C3−0.5 (2)
C2—C3—C4—C556.72 (14)C19—C18—N1—C3−179.34 (13)
S2—C3—C4—C5−65.95 (12)C4—C3—N1—C18−64.69 (15)
C3—C4—C5—C6−178.82 (11)C2—C3—N1—C1861.15 (15)
C3—C4—C5—S1−58.29 (13)S2—C3—N1—C18177.50 (10)
C4—C5—C6—C1165.69 (17)C4—C3—N1—N2116.04 (12)
S1—C5—C6—C11−56.76 (15)C2—C3—N1—N2−118.12 (11)
C4—C5—C6—C7−114.40 (15)S2—C3—N1—N2−1.78 (12)
S1—C5—C6—C7123.16 (13)N3—C20—N2—N1179.47 (11)
C11—C6—C7—C8−0.5 (2)S2—C20—N2—N1−0.92 (15)
C5—C6—C7—C8179.61 (16)C18—N1—N2—C20−177.50 (11)
C6—C7—C8—C9−0.5 (3)C3—N1—N2—C201.82 (15)
C7—C8—C9—C101.2 (3)O2—C21—N3—C202.4 (3)
C8—C9—C10—C11−0.8 (3)C22—C21—N3—C20−177.33 (18)
C7—C6—C11—C100.8 (2)N2—C20—N3—C21−178.11 (15)
C5—C6—C11—C10−179.28 (14)S2—C20—N3—C212.3 (2)
C9—C10—C11—C6−0.2 (3)C6—C5—S1—C1178.14 (9)
C2—C1—C12—C17−11.55 (19)C4—C5—S1—C155.64 (10)
S1—C1—C12—C17110.50 (14)C12—C1—S1—C5176.47 (9)
C2—C1—C12—C13168.17 (13)C2—C1—S1—C5−58.62 (10)
S1—C1—C12—C13−69.78 (15)N2—C20—S2—C3−0.11 (11)
C17—C12—C13—C14−0.6 (2)N3—C20—S2—C3179.49 (11)
C1—C12—C13—C14179.65 (15)N1—C3—S2—C200.98 (8)
C12—C13—C14—C15−0.3 (3)C4—C3—S2—C20−116.40 (9)
C13—C14—C15—C161.0 (3)C2—C3—S2—C20118.42 (9)
C14—C15—C16—C17−0.8 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3···O1i0.861.942.786 (2)166
C5—H5···O2ii0.982.493.446 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O1i0.861.942.786 (2)166
C5—H5⋯O2ii0.982.493.446 (2)163

Symmetry codes: (i) ; (ii) .

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Authors:  Upinder Singh; B Raju; Stuart Lam; Joseph Zhou; Robert C Gadwood; Charles W Ford; Gary E Zurenko; Ronda D Schaadt; Sara E Morin; Wade J Adams; Janice M Friis; Maria Courtney; Joe Palandra; Corinne J Hackbarth; Sara Lopez; Charlotte Wu; Kathleen H Mortell; Joaquim Trias; Zhengyu Yuan; Dinesh V Patel; Mikhail F Gordeev
Journal:  Bioorg Med Chem Lett       Date:  2003-12-01       Impact factor: 2.823

7.  Design, synthesis and biological activity of novel dimethyl-[2-[6-substituted-indol-1-yl]-ethyl]-amine as potent, selective, and orally-bioavailable 5-HT(1D) agonists.

Authors:  Methvin Isaac; Malik Slassi; Tao Xin; Jalaj Arora; Anne O'Brien; Louise Edwards; Neil MacLean; Julie Wilson; Lidia Demschyshyn; Phillipe Labrie; Angela Naismith; Shawn Maddaford; Damon Papac; Shuree Harrison; Hua Wang; Stan Draper; Ashok Tehim
Journal:  Bioorg Med Chem Lett       Date:  2003-12-15       Impact factor: 2.823

8.  1,2,4-thiadiazole: a novel Cathepsin B inhibitor.

Authors:  Regis Leung-Toung; Jolanta Wodzinska; Wanren Li; Jayme Lowrie; Rahul Kukreja; Denis Desilets; Khashayar Karimian; Tim Fat Tam
Journal:  Bioorg Med Chem       Date:  2003-12-01       Impact factor: 3.641

  8 in total

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