Literature DB >> 21201499

(S)-2-Amino-1-(pyrrolidinium-2-ylmeth-yl)pyridinium dibromide.

Yifeng Wang1, Shuai Zhang, Aibao Xia, Shuping Luo, Danqian Xu.   

Abstract

In the title compound, C(10)H(17)N(3) (2+)·2Br(-), the pyrrolidinium ring displays an envelope conformation, with the flap N atom lying 0.564 (6) Å from the mean plane of the remaining four C atoms. The attached methyl-ene C atom, which connects the pyrrolidinium ring and the 2-amino-pyridine group, is displaced from the plane of the four pyrrolidinium C atoms by 0.811 (8) Å in the same direction as the pyrrolidinium N atom. The amine N lies on the opposite side of this plane.

Entities:  

Year:  2008        PMID: 21201499      PMCID: PMC2960442          DOI: 10.1107/S1600536808001128

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The synthesis of (S)-(+)-2-bromo­methyl­pyrrolidine hydro­bromide is described by Xu et al. (2006 ▶). For related literature, see: Ishii et al. (2004 ▶); Larson (1970 ▶).

Experimental

Crystal data

C10H17N3 2+·2Br− M = 339.07 Monoclinic, a = 10.5509 (5) Å b = 6.1755 (3) Å c = 10.8474 (6) Å β = 107.4830 (14)° V = 674.14 (6) Å3 Z = 2 Mo Kα radiation μ = 6.01 mm−1 T = 296 (1) K 0.37 × 0.32 × 0.13 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.110, T max = 0.458 6601 measured reflections 2681 independent reflections 1943 reflections with F 2 > 2σ(F 2) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.094 S = 1.01 2681 reflections 138 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.61 e Å−3 Absolute structure: Flack (1983 ▶), with 1013 Friedel pairs Flack parameter: 0.002 (5) Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CrystalStructure; software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808001128/cs2067sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808001128/cs2067Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H17N32+·2BrF000 = 336.00
Mr = 339.07Dx = 1.670 Mg m3
Monoclinic, P21Mo Kα radiation λ = 0.71075 Å
Hall symbol: P 2ybCell parameters from 5483 reflections
a = 10.5509 (5) Åθ = 3.2–27.5º
b = 6.1755 (3) ŵ = 6.01 mm1
c = 10.8474 (6) ÅT = 296 (1) K
β = 107.4830 (14)ºPlatelet, colorless
V = 674.14 (6) Å30.37 × 0.32 × 0.13 mm
Z = 2
Rigaku R-AXIS RAPID diffractometer1943 reflections with F2 > 2σ(F2)
Detector resolution: 10.00 pixels mm-1Rint = 0.052
ω scansθmax = 27.5º
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)h = −13→13
Tmin = 0.110, Tmax = 0.458k = −7→8
6601 measured reflectionsl = −14→14
2681 independent reflections
Refinement on F2(Δ/σ)max < 0.001
R[F2 > 2σ(F2)] = 0.034Δρmax = 0.41 e Å3
wR(F2) = 0.094Δρmin = −0.61 e Å3
S = 1.01Extinction correction: Larson (1970), equation 22
2681 reflectionsExtinction coefficient: 48 (6)
138 parametersAbsolute structure: Flack (1983), 1013 Friedel pairs
H-atom parameters constrainedFlack parameter: 0.002 (5)
  w = 1/[0.9800σ(Fo2)]/(4Fo2)
xyzUiso*/Ueq
Br10.12426 (6)0.7373 (2)0.07481 (6)0.0544 (2)
Br20.36075 (6)0.4571 (2)0.62553 (6)0.0481 (2)
N10.2124 (4)0.2325 (8)0.0528 (4)0.0394 (13)
N20.2014 (4)0.1711 (7)0.3238 (4)0.0383 (14)
N30.3461 (4)−0.1049 (8)0.4252 (5)0.0504 (17)
C10.3320 (5)0.2156 (10)0.1669 (5)0.0373 (16)
C20.4356 (6)0.3574 (10)0.1293 (7)0.050 (2)
C30.3902 (8)0.3654 (13)−0.0157 (8)0.072 (3)
C40.2652 (7)0.2334 (12)−0.0600 (6)0.058 (2)
C50.3056 (6)0.2905 (8)0.2915 (6)0.0396 (19)
C60.0744 (6)0.2588 (11)0.2846 (6)0.0473 (19)
C7−0.0286 (6)0.1613 (11)0.3117 (7)0.058 (2)
C8−0.0044 (5)−0.0355 (14)0.3828 (6)0.054 (2)
C90.1193 (6)−0.1204 (10)0.4205 (6)0.048 (2)
C100.2260 (5)−0.0171 (10)0.3902 (5)0.0399 (16)
H50.36280.06500.17700.045*
H60.05990.38810.23840.057*
H7−0.11330.22140.28450.070*
H8−0.0734−0.10560.40330.065*
H90.1347−0.24910.46710.057*
H210.43780.50190.16500.060*
H220.52320.29270.16050.060*
H310.37250.5138−0.04500.087*
H320.45780.3046−0.04940.087*
H410.28470.0872−0.08170.070*
H420.20220.2998−0.13460.070*
H510.38710.27430.36220.048*
H520.28040.44200.28200.048*
H1110.16980.35020.05550.047*
H1120.16070.12340.04910.047*
H3010.4104−0.04120.40650.061*
H3020.3597−0.22570.46660.061*
U11U22U33U12U13U23
Br10.0568 (4)0.0313 (3)0.0617 (4)0.0003 (3)−0.0024 (3)0.0000 (3)
Br20.0345 (3)0.0652 (4)0.0452 (4)−0.0024 (3)0.0130 (2)0.0014 (3)
N10.035 (2)0.038 (2)0.044 (3)0.003 (2)0.011 (2)0.000 (2)
N20.035 (2)0.047 (3)0.036 (3)0.005 (2)0.014 (2)0.000 (2)
N30.031 (2)0.060 (3)0.063 (4)0.008 (2)0.017 (2)0.015 (2)
C10.030 (2)0.042 (3)0.043 (3)0.001 (2)0.015 (2)0.008 (2)
C20.047 (4)0.057 (4)0.048 (4)−0.004 (3)0.017 (3)0.007 (3)
C30.070 (5)0.088 (6)0.065 (6)0.003 (4)0.030 (4)0.016 (4)
C40.075 (4)0.071 (4)0.032 (3)0.012 (5)0.022 (3)−0.003 (3)
C50.044 (3)0.040 (4)0.035 (3)−0.002 (2)0.013 (3)0.002 (2)
C60.050 (3)0.053 (3)0.039 (3)0.009 (3)0.013 (3)0.006 (3)
C70.034 (3)0.084 (5)0.057 (4)0.004 (3)0.015 (3)−0.004 (3)
C80.029 (2)0.088 (5)0.052 (4)0.006 (4)0.023 (2)−0.001 (4)
C90.041 (3)0.064 (5)0.042 (4)−0.004 (3)0.018 (3)0.004 (2)
C100.031 (2)0.047 (3)0.039 (3)0.003 (3)0.008 (2)−0.003 (3)
N1—C11.483 (6)N3—H3010.860
N1—C41.490 (9)N3—H3020.860
N2—C51.451 (8)C1—H50.980
N2—C61.388 (8)C2—H210.970
N2—C101.351 (7)C2—H220.970
N3—C101.325 (7)C3—H310.970
C1—C21.547 (9)C3—H320.970
C1—C51.532 (9)C4—H410.970
C2—C31.501 (9)C4—H420.970
C3—C41.501 (9)C5—H510.970
C6—C71.350 (9)C5—H520.970
C7—C81.421 (9)C6—H60.930
C8—C91.351 (9)C7—H70.930
C9—C101.415 (9)C8—H80.930
N1—H1110.860C9—H90.930
N1—H1120.860
C1—N1—C4104.6 (4)C1—C2—H21110.5
C5—N2—C6117.3 (4)C1—C2—H22110.5
C5—N2—C10121.8 (4)C3—C2—H21110.5
C6—N2—C10120.8 (5)C3—C2—H22110.5
N1—C1—C2103.4 (4)H21—C2—H22109.5
N1—C1—C5112.4 (4)C2—C3—H31110.1
C2—C1—C5113.1 (4)C2—C3—H32110.1
C1—C2—C3105.5 (5)C4—C3—H31110.1
C2—C3—C4106.9 (7)C4—C3—H32110.1
N1—C4—C3104.4 (5)H31—C3—H32109.5
N2—C5—C1114.3 (4)N1—C4—H41110.7
N2—C6—C7121.7 (6)N1—C4—H42110.7
C6—C7—C8118.3 (6)C3—C4—H41110.7
C7—C8—C9119.7 (6)C3—C4—H42110.7
C8—C9—C10121.2 (6)H41—C4—H42109.5
N2—C10—N3121.3 (5)N2—C5—H51108.3
N2—C10—C9118.2 (5)N2—C5—H52108.3
N3—C10—C9120.5 (5)C1—C5—H51108.3
C1—N1—H111110.7C1—C5—H52108.3
C1—N1—H112110.7H51—C5—H52109.5
C4—N1—H111110.7N2—C6—H6119.2
C4—N1—H112110.7C7—C6—H6119.2
H111—N1—H112109.5C6—C7—H7120.8
C10—N3—H301120.0C8—C7—H7120.8
C10—N3—H302120.0C7—C8—H8120.1
H301—N3—H302120.0C9—C8—H8120.1
N1—C1—H5109.3C8—C9—H9119.4
C2—C1—H5109.3C10—C9—H9119.4
C5—C1—H5109.3
C1—N1—C4—C3−38.1 (6)N1—C1—C2—C3−23.1 (6)
C4—N1—C1—C237.7 (6)N1—C1—C5—N258.8 (6)
C4—N1—C1—C5159.9 (5)C2—C1—C5—N2175.4 (4)
C5—N2—C6—C7−179.0 (6)C5—C1—C2—C3−144.9 (5)
C6—N2—C5—C1−95.2 (6)C1—C2—C3—C40.0 (6)
C5—N2—C10—N3−2.4 (8)C2—C3—C4—N123.0 (7)
C5—N2—C10—C9178.4 (5)N2—C6—C7—C80.3 (8)
C10—N2—C5—C185.4 (6)C6—C7—C8—C9−0.4 (9)
C6—N2—C10—N3178.2 (5)C7—C8—C9—C10−0.1 (8)
C6—N2—C10—C9−0.9 (8)C8—C9—C10—N20.8 (9)
C10—N2—C6—C70.4 (8)C8—C9—C10—N3−178.4 (6)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A new class of chiral pyrrolidine-pyridine conjugate base catalysts for use in asymmetric Michael addition reactions.

Authors:  Takaaki Ishii; Shingo Fujioka; Yusuke Sekiguchi; Hiyoshizo Kotsuki
Journal:  J Am Chem Soc       Date:  2004-08-11       Impact factor: 15.419

  2 in total

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