Literature DB >> 21201492

2,3-Difluoro-benzoic acid.

Aleksandra A Knapik1, Wladek Minor, Maksymilian Chruszcz.   

Abstract

2,3-Difluoro-benzoic acid, C(7)H(4)F(2)O(2), forms dimers that are stabilized by hydrogen bonds. The dimers are stacked and the stacks are held together by weak C-H⋯F and C-H⋯O inter-actions.

Entities:  

Year:  2008        PMID: 21201492      PMCID: PMC2960366          DOI: 10.1107/S1600536808001232

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Juhler & Mortensen (2002 ▶); Malone et al. (2006 ▶); Potrzebowski & Chruszcz (2007 ▶).

Experimental

Crystal data

C7H4F2O2 M = 158.10 Monoclinic, a = 3.761 (1) Å b = 6.520 (1) Å c = 26.521 (2) Å β = 92.27 (1)° V = 649.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 293 (2) K 0.15 × 0.15 × 0.02 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (Otwinowski et al., 2003 ▶) T min = 0.98, T max = 1.00 (expected range = 0.977–0.997) 25713 measured reflections 1881 independent reflections 1371 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.133 S = 1.06 1881 reflections 116 parameters All H-atom parameters refined Δρmax = 0.28 e Å−3 Δρmin = −0.13 e Å−3 Data collection: HKL-2000 (Otwinowski & Minor, 1997 ▶); cell refinement: HKL-2000; data reduction: HKL-2000; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶) and HKL-3000SM (Minor et al., 2006 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and HKL-3000SM; molecular graphics: HKL-3000SM, Mercury (Macrae et al., 2006 ▶), ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: HKL-3000SM. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808001232/om2199sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808001232/om2199Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H4F2O2F000 = 320
Mr = 158.10Dx = 1.616 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71074 Å
Hall symbol: -P 2ybcCell parameters from 25713 reflections
a = 3.761 (1) Åθ = 3.1–30.0º
b = 6.520 (1) ŵ = 0.15 mm1
c = 26.521 (2) ÅT = 293 (2) K
β = 92.27 (1)ºPlate, colorless
V = 649.8 (2) Å30.15 × 0.15 × 0.02 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer1881 independent reflections
Radiation source: fine-focus sealed tube1371 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.031
Detector resolution: 10 pixels mm-1θmax = 30.0º
T = 293(2) Kθmin = 3.1º
ω scans with χ offseth = −5→5
Absorption correction: multi-scan(Otwinowski et al., 2003)k = −9→9
Tmin = 0.98, Tmax = 1.00l = −37→37
25713 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044All H-atom parameters refined
wR(F2) = 0.133  w = 1/[σ2(Fo2) + (0.0665P)2 + 0.0891P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1881 reflectionsΔρmax = 0.29 e Å3
116 parametersΔρmin = −0.13 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3028 (3)0.18896 (18)0.09787 (4)0.0453 (3)
C20.3710 (3)0.2435 (2)0.14793 (5)0.0507 (3)
C30.2895 (4)0.1088 (2)0.18600 (5)0.0580 (3)
C40.1428 (4)−0.0797 (2)0.17592 (6)0.0607 (4)
C50.0737 (4)−0.1357 (2)0.12626 (6)0.0587 (3)
C60.1521 (3)−0.0033 (2)0.08785 (5)0.0517 (3)
C70.3892 (3)0.32666 (19)0.05550 (5)0.0485 (3)
F10.5159 (3)0.42443 (14)0.16134 (3)0.0748 (3)
F20.3611 (3)0.16829 (19)0.23412 (3)0.0893 (4)
O10.5592 (3)0.48801 (16)0.06313 (4)0.0673 (3)
O20.2818 (3)0.26822 (19)0.01143 (4)0.0742 (4)
H20.330 (8)0.372 (4)−0.0169 (13)0.158 (11)*
H40.090 (5)−0.174 (3)0.2020 (8)0.087 (6)*
H5−0.026 (5)−0.264 (3)0.1183 (7)0.079 (5)*
H60.104 (4)−0.037 (3)0.0534 (6)0.057 (4)*
U11U22U33U12U13U23
C10.0441 (6)0.0446 (6)0.0472 (6)0.0012 (5)0.0014 (4)−0.0005 (5)
C20.0550 (7)0.0465 (6)0.0503 (6)0.0009 (5)0.0003 (5)−0.0037 (5)
C30.0635 (8)0.0653 (8)0.0451 (6)0.0066 (6)0.0024 (5)0.0018 (6)
C40.0593 (7)0.0625 (8)0.0607 (8)0.0018 (6)0.0074 (6)0.0151 (6)
C50.0565 (7)0.0494 (7)0.0699 (9)−0.0047 (6)0.0003 (6)0.0058 (6)
C60.0524 (7)0.0495 (7)0.0529 (7)−0.0036 (5)−0.0017 (5)−0.0021 (5)
C70.0503 (6)0.0481 (6)0.0471 (6)−0.0027 (5)0.0001 (5)−0.0024 (5)
F10.1091 (7)0.0572 (5)0.0576 (5)−0.0162 (5)−0.0039 (5)−0.0095 (4)
F20.1270 (9)0.0956 (8)0.0449 (5)−0.0067 (7)0.0015 (5)−0.0011 (5)
O10.0901 (7)0.0569 (6)0.0544 (5)−0.0240 (5)−0.0021 (5)0.0016 (4)
O20.1028 (9)0.0728 (7)0.0461 (5)−0.0317 (6)−0.0058 (5)0.0013 (5)
C1—C21.3885 (17)C4—H40.95 (2)
C1—C61.3968 (17)C5—C61.376 (2)
C1—C71.4842 (17)C5—H50.94 (2)
C2—F11.3415 (16)C6—H60.950 (16)
C2—C31.3819 (19)C7—O11.2435 (16)
C3—F21.3508 (16)C7—O21.2796 (15)
C3—C41.369 (2)O2—H21.03 (3)
C4—C51.381 (2)
C2—C1—C6118.03 (12)C5—C4—H4119.0 (12)
C2—C1—C7122.09 (11)C6—C5—C4120.17 (14)
C6—C1—C7119.88 (11)C6—C5—H5119.2 (12)
F1—C2—C3117.71 (12)C4—C5—H5120.6 (11)
F1—C2—C1122.43 (12)C5—C6—C1121.28 (13)
C3—C2—C1119.86 (12)C5—C6—H6122.0 (10)
F2—C3—C4120.41 (13)C1—C6—H6116.8 (10)
F2—C3—C2117.76 (14)O1—C7—O2122.84 (12)
C4—C3—C2121.82 (13)O1—C7—C1121.00 (11)
C3—C4—C5118.84 (13)O2—C7—C1116.15 (11)
C3—C4—H4122.2 (12)C7—O2—H2114.3 (16)
C6—C1—C2—F1179.84 (11)C2—C3—C4—C5−0.2 (2)
C7—C1—C2—F10.6 (2)C3—C4—C5—C60.0 (2)
C6—C1—C2—C3−0.03 (19)C4—C5—C6—C10.2 (2)
C7—C1—C2—C3−179.23 (12)C2—C1—C6—C5−0.17 (19)
F1—C2—C3—F20.0 (2)C7—C1—C6—C5179.05 (12)
C1—C2—C3—F2179.88 (12)C2—C1—C7—O17.3 (2)
F1—C2—C3—C4−179.64 (13)C6—C1—C7—O1−171.85 (12)
C1—C2—C3—C40.2 (2)C2—C1—C7—O2−173.28 (12)
F2—C3—C4—C5−179.87 (13)C6—C1—C7—O27.53 (18)
D—H···AD—HH···AD···AD—H···A
C5—H5···O1i0.94 (2)2.65 (2)3.509 (2)153 (2)
O2—H2···O1ii1.03 (3)1.60 (3)2.625 (2)173 (3)
C6—H6···O2iii0.95 (2)2.67 (2)3.498 (2)146 (1)
C4—H4···F2iv0.95 (2)2.65 (2)3.513 (2)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O1i0.94 (2)2.65 (2)3.509 (2)153 (2)
O2—H2⋯O1ii1.03 (3)1.60 (3)2.625 (2)173 (3)
C6—H6⋯O2iii0.95 (2)2.67 (2)3.498 (2)146 (1)
C4—H4⋯F2iv0.95 (2)2.65 (2)3.513 (2)151 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Multiparametric scaling of diffraction intensities.

Authors:  Zbyszek Otwinowski; Dominika Borek; Wladyslaw Majewski; Wladek Minor
Journal:  Acta Crystallogr A       Date:  2003-04-25       Impact factor: 2.290

2.  HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.

Authors:  Wladek Minor; Marcin Cymborowski; Zbyszek Otwinowski; Maksymilian Chruszcz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Analysing fluorobenzoate tracers in groundwater samples using liquid chromatography-tandem mass spectrometry. A tool for leaching studies and hydrology.

Authors:  René K Juhler; Annette P Mortensen
Journal:  J Chromatogr A       Date:  2002-05-24       Impact factor: 4.759

  4 in total

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