| Literature DB >> 21201229 |
Graeme J Gainsford1, M Delower H Bhuiyan, Andrew J Kay.
Abstract
The title compound, C(20)H(20)N(4)O, is packed into a three-dimensional 'herringbone' matrix using two different types of attractive C-H⋯N(cyano) inter-actions. The bond-length alternation, caused by delocalization of charge between the donor N atoms and the cyano acceptor groups, is compared with related compounds.Entities:
Year: 2008 PMID: 21201229 PMCID: PMC2959365 DOI: 10.1107/S1600536808028110
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H20N4O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 6328 reflections |
| θ = 2.5–25.0° | |
| µ = 0.08 mm−1 | |
| Plate, brown | |
| 0.32 × 0.25 × 0.07 mm |
| Bruker Nonius APEXII CCD area-detector diffractometer | 3641 independent reflections |
| Radiation source: fine-focus sealed tube | 2078 reflections with |
| graphite | |
| Detector resolution: 8.192 pixels mm-1 | θmax = 26.4°, θmin = 3.4° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 20272 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3641 reflections | Δρmax = 0.26 e Å−3 |
| 229 parameters | Δρmin = −0.27 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0124 (13) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. An extinction parameter was refined. Refinement of |
| O1 | 0.18457 (11) | 0.09182 (12) | 0.41943 (5) | 0.0312 (4) | |
| N1 | −0.10627 (17) | −0.09427 (19) | 0.33366 (8) | 0.0476 (6) | |
| N2 | 0.24246 (16) | −0.08511 (17) | 0.31039 (8) | 0.0447 (5) | |
| N3 | −0.18623 (16) | 0.14659 (16) | 0.40666 (7) | 0.0371 (5) | |
| N4 | 0.07598 (13) | 0.73470 (14) | 0.71061 (6) | 0.0276 (4) | |
| C1 | −0.02458 (19) | −0.05836 (19) | 0.34560 (8) | 0.0331 (6) | |
| C2 | 0.07610 (17) | −0.01503 (19) | 0.36100 (8) | 0.0289 (5) | |
| C3 | 0.16705 (19) | −0.05488 (19) | 0.33319 (8) | 0.0331 (6) | |
| C4 | 0.06334 (17) | 0.20694 (18) | 0.46776 (7) | 0.0262 (5) | |
| C5 | 0.17947 (17) | 0.17853 (18) | 0.46411 (7) | 0.0272 (5) | |
| C6 | 0.08595 (16) | 0.06720 (18) | 0.40190 (8) | 0.0271 (5) | |
| C7 | 0.01165 (16) | 0.13485 (17) | 0.42942 (8) | 0.0258 (5) | |
| C8 | 0.24674 (17) | 0.27708 (18) | 0.44398 (8) | 0.0330 (5) | |
| H8A | 0.3161 | 0.2487 | 0.4326 | 0.049* | |
| H8B | 0.2554 | 0.3324 | 0.4740 | 0.049* | |
| H8C | 0.2121 | 0.3137 | 0.4124 | 0.049* | |
| C9 | 0.22067 (17) | 0.11865 (18) | 0.51558 (8) | 0.0321 (5) | |
| H9A | 0.1729 | 0.0564 | 0.5255 | 0.048* | |
| H9B | 0.2245 | 0.1730 | 0.5463 | 0.048* | |
| H9C | 0.2912 | 0.0880 | 0.5082 | 0.048* | |
| C10 | −0.09674 (19) | 0.13888 (18) | 0.41677 (8) | 0.0274 (5) | |
| C11 | 0.01687 (17) | 0.28779 (18) | 0.50081 (8) | 0.0294 (5) | |
| H11 | −0.0572 | 0.2970 | 0.4971 | 0.035* | |
| C12 | 0.06770 (18) | 0.35851 (18) | 0.53967 (8) | 0.0292 (5) | |
| H12 | 0.1418 | 0.3493 | 0.5437 | 0.035* | |
| C13 | 0.02036 (17) | 0.43921 (18) | 0.57211 (8) | 0.0290 (5) | |
| H13 | −0.0539 | 0.4490 | 0.5698 | 0.035* | |
| C14 | 0.07818 (17) | 0.50812 (18) | 0.60878 (7) | 0.0277 (5) | |
| H14 | 0.1523 | 0.4964 | 0.6100 | 0.033* | |
| C15 | 0.03820 (17) | 0.59043 (18) | 0.64288 (8) | 0.0284 (5) | |
| H15 | −0.0358 | 0.6031 | 0.6443 | 0.034* | |
| C16 | 0.10612 (18) | 0.65628 (18) | 0.67577 (8) | 0.0282 (5) | |
| H16 | 0.1797 | 0.6427 | 0.6724 | 0.034* | |
| C17 | −0.03553 (16) | 0.75976 (18) | 0.72429 (8) | 0.0305 (5) | |
| H17A | −0.0717 | 0.6910 | 0.7383 | 0.037* | |
| H17B | −0.0739 | 0.7882 | 0.6914 | 0.037* | |
| C18 | −0.02940 (18) | 0.85123 (19) | 0.76908 (9) | 0.0363 (6) | |
| H18A | −0.0828 | 0.8376 | 0.7982 | 0.044* | |
| H18B | −0.0410 | 0.9277 | 0.7531 | 0.044* | |
| C19 | 0.08212 (17) | 0.84082 (19) | 0.79260 (8) | 0.0358 (6) | |
| H19A | 0.1061 | 0.9139 | 0.8086 | 0.043* | |
| H19B | 0.0855 | 0.7813 | 0.8215 | 0.043* | |
| C20 | 0.14812 (18) | 0.80835 (18) | 0.74275 (8) | 0.0340 (6) | |
| H20A | 0.1689 | 0.8764 | 0.7212 | 0.041* | |
| H20B | 0.2124 | 0.7665 | 0.7540 | 0.041* |
| O1 | 0.0281 (9) | 0.0392 (9) | 0.0264 (7) | 0.0026 (7) | −0.0026 (6) | −0.0084 (6) |
| N1 | 0.0432 (14) | 0.0531 (14) | 0.0466 (12) | −0.0001 (11) | −0.0019 (10) | −0.0186 (11) |
| N2 | 0.0464 (14) | 0.0491 (13) | 0.0385 (11) | 0.0012 (11) | 0.0056 (10) | −0.0111 (10) |
| N3 | 0.0351 (13) | 0.0421 (13) | 0.0342 (10) | −0.0013 (9) | 0.0022 (9) | −0.0045 (9) |
| N4 | 0.0303 (11) | 0.0320 (10) | 0.0205 (8) | −0.0010 (8) | 0.0004 (7) | −0.0002 (8) |
| C1 | 0.0395 (15) | 0.0351 (14) | 0.0248 (11) | 0.0029 (11) | −0.0006 (10) | −0.0078 (10) |
| C2 | 0.0336 (13) | 0.0321 (13) | 0.0209 (10) | 0.0020 (10) | −0.0007 (9) | −0.0024 (9) |
| C3 | 0.0420 (16) | 0.0339 (13) | 0.0235 (11) | −0.0008 (11) | −0.0009 (10) | −0.0051 (10) |
| C4 | 0.0301 (13) | 0.0298 (12) | 0.0189 (10) | −0.0005 (10) | 0.0019 (9) | 0.0018 (9) |
| C5 | 0.0296 (13) | 0.0311 (12) | 0.0209 (10) | −0.0003 (10) | −0.0004 (9) | −0.0043 (9) |
| C6 | 0.0302 (13) | 0.0322 (13) | 0.0190 (10) | −0.0019 (10) | −0.0025 (9) | 0.0019 (9) |
| C7 | 0.0266 (13) | 0.0306 (13) | 0.0201 (10) | 0.0006 (9) | −0.0002 (9) | −0.0015 (9) |
| C8 | 0.0336 (13) | 0.0380 (13) | 0.0272 (11) | −0.0014 (11) | 0.0024 (10) | 0.0029 (10) |
| C9 | 0.0370 (14) | 0.0325 (13) | 0.0267 (11) | 0.0030 (10) | −0.0020 (10) | 0.0019 (10) |
| C10 | 0.0343 (15) | 0.0283 (13) | 0.0197 (10) | −0.0018 (10) | 0.0042 (10) | −0.0035 (9) |
| C11 | 0.0291 (13) | 0.0382 (14) | 0.0211 (10) | 0.0005 (10) | −0.0004 (9) | −0.0017 (10) |
| C12 | 0.0308 (13) | 0.0356 (13) | 0.0212 (10) | −0.0004 (10) | 0.0017 (9) | 0.0004 (9) |
| C13 | 0.0328 (13) | 0.0339 (13) | 0.0204 (10) | 0.0013 (10) | 0.0011 (9) | −0.0007 (9) |
| C14 | 0.0337 (13) | 0.0308 (12) | 0.0186 (10) | −0.0008 (10) | 0.0022 (9) | 0.0030 (9) |
| C15 | 0.0336 (13) | 0.0327 (13) | 0.0190 (10) | 0.0002 (10) | 0.0015 (9) | 0.0008 (9) |
| C16 | 0.0341 (13) | 0.0303 (12) | 0.0200 (10) | 0.0023 (10) | 0.0048 (9) | 0.0029 (9) |
| C17 | 0.0330 (14) | 0.0359 (13) | 0.0225 (10) | 0.0031 (10) | 0.0002 (9) | −0.0008 (9) |
| C18 | 0.0490 (16) | 0.0341 (13) | 0.0258 (11) | 0.0033 (11) | −0.0010 (11) | −0.0045 (10) |
| C19 | 0.0451 (16) | 0.0352 (13) | 0.0270 (11) | 0.0002 (11) | −0.0043 (10) | −0.0071 (10) |
| C20 | 0.0440 (15) | 0.0324 (13) | 0.0257 (11) | −0.0062 (11) | −0.0058 (10) | −0.0020 (10) |
| O1—C6 | 1.351 (2) | C9—H9C | 0.9800 |
| O1—C5 | 1.486 (2) | C11—C12 | 1.410 (3) |
| N1—C1 | 1.155 (3) | C11—H11 | 0.9500 |
| N2—C3 | 1.159 (3) | C12—C13 | 1.369 (3) |
| N3—C10 | 1.164 (3) | C12—H12 | 0.9500 |
| N4—C16 | 1.306 (2) | C13—C14 | 1.407 (3) |
| N4—C20 | 1.480 (3) | C13—H13 | 0.9500 |
| N4—C17 | 1.481 (3) | C14—C15 | 1.369 (3) |
| C1—C2 | 1.424 (3) | C14—H14 | 0.9500 |
| C2—C6 | 1.388 (3) | C15—C16 | 1.404 (3) |
| C2—C3 | 1.414 (3) | C15—H15 | 0.9500 |
| C4—C11 | 1.374 (3) | C16—H16 | 0.9500 |
| C4—C7 | 1.417 (3) | C17—C18 | 1.528 (3) |
| C4—C5 | 1.512 (3) | C17—H17A | 0.9900 |
| C5—C8 | 1.519 (3) | C17—H17B | 0.9900 |
| C5—C9 | 1.522 (3) | C18—C19 | 1.529 (3) |
| C6—C7 | 1.401 (3) | C18—H18A | 0.9900 |
| C7—C10 | 1.408 (3) | C18—H18B | 0.9900 |
| C8—H8A | 0.9800 | C19—C20 | 1.516 (3) |
| C8—H8B | 0.9800 | C19—H19A | 0.9900 |
| C8—H8C | 0.9800 | C19—H19B | 0.9900 |
| C9—H9A | 0.9800 | C20—H20A | 0.9900 |
| C9—H9B | 0.9800 | C20—H20B | 0.9900 |
| C6—O1—C5 | 109.54 (15) | C13—C12—C11 | 126.1 (2) |
| C16—N4—C20 | 124.81 (18) | C13—C12—H12 | 116.9 |
| C16—N4—C17 | 124.30 (17) | C11—C12—H12 | 116.9 |
| C20—N4—C17 | 110.87 (16) | C12—C13—C14 | 122.1 (2) |
| N1—C1—C2 | 179.2 (2) | C12—C13—H13 | 118.9 |
| C6—C2—C3 | 119.7 (2) | C14—C13—H13 | 118.9 |
| C6—C2—C1 | 121.06 (19) | C15—C14—C13 | 126.4 (2) |
| C3—C2—C1 | 119.22 (19) | C15—C14—H14 | 116.8 |
| N2—C3—C2 | 178.5 (2) | C13—C14—H14 | 116.8 |
| C11—C4—C7 | 126.6 (2) | C14—C15—C16 | 120.2 (2) |
| C11—C4—C5 | 127.16 (18) | C14—C15—H15 | 119.9 |
| C7—C4—C5 | 106.25 (17) | C16—C15—H15 | 119.9 |
| O1—C5—C4 | 103.67 (15) | N4—C16—C15 | 125.1 (2) |
| O1—C5—C8 | 105.46 (15) | N4—C16—H16 | 117.5 |
| C4—C5—C8 | 113.37 (17) | C15—C16—H16 | 117.5 |
| O1—C5—C9 | 105.15 (16) | N4—C17—C18 | 104.45 (16) |
| C4—C5—C9 | 112.87 (16) | N4—C17—H17A | 110.9 |
| C8—C5—C9 | 114.97 (17) | C18—C17—H17A | 110.9 |
| O1—C6—C2 | 117.11 (18) | N4—C17—H17B | 110.9 |
| O1—C6—C7 | 110.58 (17) | C18—C17—H17B | 110.9 |
| C2—C6—C7 | 132.3 (2) | H17A—C17—H17B | 108.9 |
| C6—C7—C10 | 124.89 (18) | C17—C18—C19 | 104.71 (17) |
| C6—C7—C4 | 109.84 (18) | C17—C18—H18A | 110.8 |
| C10—C7—C4 | 124.96 (18) | C19—C18—H18A | 110.8 |
| C5—C8—H8A | 109.5 | C17—C18—H18B | 110.8 |
| C5—C8—H8B | 109.5 | C19—C18—H18B | 110.8 |
| H8A—C8—H8B | 109.5 | H18A—C18—H18B | 108.9 |
| C5—C8—H8C | 109.5 | C20—C19—C18 | 103.61 (17) |
| H8A—C8—H8C | 109.5 | C20—C19—H19A | 111.0 |
| H8B—C8—H8C | 109.5 | C18—C19—H19A | 111.0 |
| C5—C9—H9A | 109.5 | C20—C19—H19B | 111.0 |
| C5—C9—H9B | 109.5 | C18—C19—H19B | 111.0 |
| H9A—C9—H9B | 109.5 | H19A—C19—H19B | 109.0 |
| C5—C9—H9C | 109.5 | N4—C20—C19 | 102.91 (17) |
| H9A—C9—H9C | 109.5 | N4—C20—H20A | 111.2 |
| H9B—C9—H9C | 109.5 | C19—C20—H20A | 111.2 |
| N3—C10—C7 | 177.4 (2) | N4—C20—H20B | 111.2 |
| C4—C11—C12 | 126.8 (2) | C19—C20—H20B | 111.2 |
| C4—C11—H11 | 116.6 | H20A—C20—H20B | 109.1 |
| C12—C11—H11 | 116.6 | ||
| C6—O1—C5—C4 | −3.51 (19) | C5—C4—C7—C6 | −1.4 (2) |
| C6—O1—C5—C8 | −122.90 (17) | C11—C4—C7—C10 | 3.6 (3) |
| C6—O1—C5—C9 | 115.19 (17) | C5—C4—C7—C10 | −175.33 (18) |
| C11—C4—C5—O1 | −176.05 (18) | C7—C4—C11—C12 | 178.9 (2) |
| C7—C4—C5—O1 | 2.9 (2) | C5—C4—C11—C12 | −2.4 (3) |
| C11—C4—C5—C8 | −62.2 (3) | C4—C11—C12—C13 | 179.6 (2) |
| C7—C4—C5—C8 | 116.70 (18) | C11—C12—C13—C14 | −178.23 (19) |
| C11—C4—C5—C9 | 70.7 (3) | C12—C13—C14—C15 | −179.8 (2) |
| C7—C4—C5—C9 | −110.35 (18) | C13—C14—C15—C16 | −177.29 (19) |
| C5—O1—C6—C2 | −178.33 (17) | C20—N4—C16—C15 | −176.28 (19) |
| C5—O1—C6—C7 | 2.8 (2) | C17—N4—C16—C15 | 5.4 (3) |
| C3—C2—C6—O1 | −10.6 (3) | C14—C15—C16—N4 | −178.18 (19) |
| C1—C2—C6—O1 | 170.85 (18) | C16—N4—C17—C18 | 176.39 (18) |
| C3—C2—C6—C7 | 168.0 (2) | C20—N4—C17—C18 | −2.2 (2) |
| C1—C2—C6—C7 | −10.6 (3) | N4—C17—C18—C19 | −20.2 (2) |
| O1—C6—C7—C10 | 173.07 (18) | C17—C18—C19—C20 | 34.8 (2) |
| C2—C6—C7—C10 | −5.5 (4) | C16—N4—C20—C19 | −154.84 (18) |
| O1—C6—C7—C4 | −0.9 (2) | C17—N4—C20—C19 | 23.7 (2) |
| C2—C6—C7—C4 | −179.5 (2) | C18—C19—C20—N4 | −35.4 (2) |
| C11—C4—C7—C6 | 177.55 (19) |
| H··· | ||||
| C12—H12···N3i | 0.95 | 2.49 | 3.379 (3) | 156 |
| C17—H17A···N1ii | 0.99 | 2.61 | 3.402 (3) | 137 |
| C20—H20B···N2ii | 0.99 | 2.56 | 3.316 (3) | 133 |
| ?s | (I) | (II)a | (III)b | (IV) |
| C2—C6 | 1.388 (3) | 1.388 (5) | 1.389 (6) | 1.359 (4) |
| C6—C7 | 1.401 (3) | 1.412 (5) | 1.390 (5) | 1.445 (4) |
| C4—C7 | 1.417 (3) | 1.402 (5) | 1.426 (6) | 1.343 (4) |
| C4—C11 | 1.374 (3) | 1.405 (5) | 1.366 (5) | 1.472 (4) |
| C11—C12 | 1.410 (3) | 1.397 (5) | 1.402 (6) | — |
| C12—C13 | 1.369 (3) | 1.384 (5) | 1.381 (5) | — |
| C13—C14 | 1.407 (3) | 1.397 (5) | 1.396 (6) | — |
| C14—C15 | 1.369 (3) | — | — | — |
| C15—C16 | 1.404 (3) | — | — | — |
| N4—CTc | 1.306 (2) | 1.317 (4) | 1.315 (5) | — |
| C6—O1 | 1.351 (2) | 1.341 (4) | 1.360 (4) | 1.333 (3) |
| C5—O1 | 1.486 (2) | 1.482 (4) | 1.489 (8) | 1.481 (4) |
| C4—C7—C6 | 109.84 (18) | 108.7 (3) | 109.7 (4) | 109.4 (2) |
| C7—C6—C2 | 132.3 (2) | 131.7 (3) | 133.7 (4) | 131.3 (3) |
| C11—C4—C7 | 126.6 (2) | 125.2 (3) | 126.6 (4) | 128.6 (3) |
| C4—C11—C12—C13 | 179.6 (2) | -177.4 (4) | 178.1 (4) | — |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C12—H12⋯N3i | 0.95 | 2.49 | 3.379 (3) | 156 |
| C17—H17 | 0.99 | 2.61 | 3.402 (3) | 137 |
| C20—H20 | 0.99 | 2.56 | 3.316 (3) | 133 |
Symmetry codes: (i) ; (ii) .
Selected bond lengths and angles (Å,°) in the title compound and related compounds
Compound (I) is the title compound, (II) is the closely related buta-1,3-dienyl equivalent (Gainsford et al., 2008c), (III) is the piperidin-1-yl equivalent of (II) (Gainsford et al., 2008b ▶) and (IV) is the starting acceptor molecule 2-dicyanomethylene-4,5,5-trimethyl-2,5-dihydro-furan-3-carbonitrile (Li et al., 2005 ▶)
| (I) | (II) | (III) | (IV) | |
|---|---|---|---|---|
| C2—C6 | 1.388 (3) | 1.388 (5) | 1.389 (6) | 1.359 (4) |
| C6—C7 | 1.401 (3) | 1.412 (5) | 1.390 (5) | 1.445 (4) |
| C4—C7 | 1.417 (3) | 1.402 (5) | 1.426 (6) | 1.343 (4) |
| C4—C11 | 1.374 (3) | 1.405 (5) | 1.366 (5) | 1.472 (4) |
| C11—C12 | 1.410 (3) | 1.397 (5) | 1.402 (6) | — |
| C12—C13 | 1.369 (3) | 1.384 (5) | 1.381 (5) | — |
| C13—C14 | 1.407 (3) | 1.397 (5) | 1.396 (6) | — |
| C14—C15 | 1.369 (3) | — | — | — |
| C15—C16 | 1.404 (3) | — | — | — |
| N4—CT | 1.306 (2) | 1.317 (4) | 1.315 (5) | — |
| C6—O1 | 1.351 (2) | 1.341 (4) | 1.360 (4) | 1.333 (3) |
| C5—O1 | 1.486 (2) | 1.482 (4) | 1.489 (8) | 1.481 (4) |
| C4—C7—C6 | 109.84 (18) | 108.7 (3) | 109.7 (4) | 109.4 (2) |
| C7—C6—C2 | 132.3 (2) | 131.7 (3) | 133.7 (4) | 131.3 (3) |
| C11—C4—C7 | 126.6 (2) | 125.2 (3) | 126.6 (4) | 128.6 (3) |
| C4—C11—C12—C13 | 179.6 (2) | −177.4 (4) | 178.1 (4) | — |
Notes: (a) Larger s.u. values reflect crystal quality; (b) Average of two independent molecules; (c) CT is the terminal atom of the polyene chain.