Literature DB >> 21201229

2-{3-Cyano-5,5-dimethyl-4-[6-(pyrrol-i-din-1-yl)hexa-1,3,5-trien-yl]-2,5-dihydro-2-furylidene}malononitrile.

Graeme J Gainsford1, M Delower H Bhuiyan, Andrew J Kay.   

Abstract

The title compound, C(20)H(20)N(4)O, is packed into a three-dimensional 'herringbone' matrix using two different types of attractive C-H⋯N(cyano) inter-actions. The bond-length alternation, caused by delocalization of charge between the donor N atoms and the cyano acceptor groups, is compared with related compounds.

Entities:  

Year:  2008        PMID: 21201229      PMCID: PMC2959365          DOI: 10.1107/S1600536808028110

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Kay et al. (2004 ▶). For related literature, see: Gainsford et al. (2007 ▶, 2008a ▶,b ▶); Marder et al. (1993 ▶); Li et al. (2005 ▶). For a similar herringbone structure, see: Desiraju & Gavezzotti (1989 ▶).

Experimental

Crystal data

C20H20N4O M = 332.40 Orthorhombic, a = 12.6766 (13) Å b = 11.7603 (13) Å c = 24.164 (3) Å V = 3602.4 (7) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 116 (2) K 0.32 × 0.25 × 0.07 mm

Data collection

Bruker Nonius APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.494, T max = 1.0 (expected range = 0.491–0.995) 20272 measured reflections 3641 independent reflections 2078 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.129 S = 0.98 3641 reflections 229 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97, PLATON and Mercury (Macrae et al., 2006 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808028110/ng2475sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808028110/ng2475Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H20N4OF(000) = 1408
Mr = 332.40Dx = 1.226 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 6328 reflections
a = 12.6766 (13) Åθ = 2.5–25.0°
b = 11.7603 (13) ŵ = 0.08 mm1
c = 24.164 (3) ÅT = 116 K
V = 3602.4 (7) Å3Plate, brown
Z = 80.32 × 0.25 × 0.07 mm
Bruker Nonius APEXII CCD area-detector diffractometer3641 independent reflections
Radiation source: fine-focus sealed tube2078 reflections with I > 2σ(I)
graphiteRint = 0.081
Detector resolution: 8.192 pixels mm-1θmax = 26.4°, θmin = 3.4°
φ and ω scansh = −10→15
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −14→14
Tmin = 0.494, Tmax = 1.0l = −30→27
20272 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.129w = 1/[σ2(Fo2) + (0.0633P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max < 0.001
3641 reflectionsΔρmax = 0.26 e Å3
229 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0124 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. An extinction parameter was refined. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.18457 (11)0.09182 (12)0.41943 (5)0.0312 (4)
N1−0.10627 (17)−0.09427 (19)0.33366 (8)0.0476 (6)
N20.24246 (16)−0.08511 (17)0.31039 (8)0.0447 (5)
N3−0.18623 (16)0.14659 (16)0.40666 (7)0.0371 (5)
N40.07598 (13)0.73470 (14)0.71061 (6)0.0276 (4)
C1−0.02458 (19)−0.05836 (19)0.34560 (8)0.0331 (6)
C20.07610 (17)−0.01503 (19)0.36100 (8)0.0289 (5)
C30.16705 (19)−0.05488 (19)0.33319 (8)0.0331 (6)
C40.06334 (17)0.20694 (18)0.46776 (7)0.0262 (5)
C50.17947 (17)0.17853 (18)0.46411 (7)0.0272 (5)
C60.08595 (16)0.06720 (18)0.40190 (8)0.0271 (5)
C70.01165 (16)0.13485 (17)0.42942 (8)0.0258 (5)
C80.24674 (17)0.27708 (18)0.44398 (8)0.0330 (5)
H8A0.31610.24870.43260.049*
H8B0.25540.33240.47400.049*
H8C0.21210.31370.41240.049*
C90.22067 (17)0.11865 (18)0.51558 (8)0.0321 (5)
H9A0.17290.05640.52550.048*
H9B0.22450.17300.54630.048*
H9C0.29120.08800.50820.048*
C10−0.09674 (19)0.13888 (18)0.41677 (8)0.0274 (5)
C110.01687 (17)0.28779 (18)0.50081 (8)0.0294 (5)
H11−0.05720.29700.49710.035*
C120.06770 (18)0.35851 (18)0.53967 (8)0.0292 (5)
H120.14180.34930.54370.035*
C130.02036 (17)0.43921 (18)0.57211 (8)0.0290 (5)
H13−0.05390.44900.56980.035*
C140.07818 (17)0.50812 (18)0.60878 (7)0.0277 (5)
H140.15230.49640.61000.033*
C150.03820 (17)0.59043 (18)0.64288 (8)0.0284 (5)
H15−0.03580.60310.64430.034*
C160.10612 (18)0.65628 (18)0.67577 (8)0.0282 (5)
H160.17970.64270.67240.034*
C17−0.03553 (16)0.75976 (18)0.72429 (8)0.0305 (5)
H17A−0.07170.69100.73830.037*
H17B−0.07390.78820.69140.037*
C18−0.02940 (18)0.85123 (19)0.76908 (9)0.0363 (6)
H18A−0.08280.83760.79820.044*
H18B−0.04100.92770.75310.044*
C190.08212 (17)0.84082 (19)0.79260 (8)0.0358 (6)
H19A0.10610.91390.80860.043*
H19B0.08550.78130.82150.043*
C200.14812 (18)0.80835 (18)0.74275 (8)0.0340 (6)
H20A0.16890.87640.72120.041*
H20B0.21240.76650.75400.041*
U11U22U33U12U13U23
O10.0281 (9)0.0392 (9)0.0264 (7)0.0026 (7)−0.0026 (6)−0.0084 (6)
N10.0432 (14)0.0531 (14)0.0466 (12)−0.0001 (11)−0.0019 (10)−0.0186 (11)
N20.0464 (14)0.0491 (13)0.0385 (11)0.0012 (11)0.0056 (10)−0.0111 (10)
N30.0351 (13)0.0421 (13)0.0342 (10)−0.0013 (9)0.0022 (9)−0.0045 (9)
N40.0303 (11)0.0320 (10)0.0205 (8)−0.0010 (8)0.0004 (7)−0.0002 (8)
C10.0395 (15)0.0351 (14)0.0248 (11)0.0029 (11)−0.0006 (10)−0.0078 (10)
C20.0336 (13)0.0321 (13)0.0209 (10)0.0020 (10)−0.0007 (9)−0.0024 (9)
C30.0420 (16)0.0339 (13)0.0235 (11)−0.0008 (11)−0.0009 (10)−0.0051 (10)
C40.0301 (13)0.0298 (12)0.0189 (10)−0.0005 (10)0.0019 (9)0.0018 (9)
C50.0296 (13)0.0311 (12)0.0209 (10)−0.0003 (10)−0.0004 (9)−0.0043 (9)
C60.0302 (13)0.0322 (13)0.0190 (10)−0.0019 (10)−0.0025 (9)0.0019 (9)
C70.0266 (13)0.0306 (13)0.0201 (10)0.0006 (9)−0.0002 (9)−0.0015 (9)
C80.0336 (13)0.0380 (13)0.0272 (11)−0.0014 (11)0.0024 (10)0.0029 (10)
C90.0370 (14)0.0325 (13)0.0267 (11)0.0030 (10)−0.0020 (10)0.0019 (10)
C100.0343 (15)0.0283 (13)0.0197 (10)−0.0018 (10)0.0042 (10)−0.0035 (9)
C110.0291 (13)0.0382 (14)0.0211 (10)0.0005 (10)−0.0004 (9)−0.0017 (10)
C120.0308 (13)0.0356 (13)0.0212 (10)−0.0004 (10)0.0017 (9)0.0004 (9)
C130.0328 (13)0.0339 (13)0.0204 (10)0.0013 (10)0.0011 (9)−0.0007 (9)
C140.0337 (13)0.0308 (12)0.0186 (10)−0.0008 (10)0.0022 (9)0.0030 (9)
C150.0336 (13)0.0327 (13)0.0190 (10)0.0002 (10)0.0015 (9)0.0008 (9)
C160.0341 (13)0.0303 (12)0.0200 (10)0.0023 (10)0.0048 (9)0.0029 (9)
C170.0330 (14)0.0359 (13)0.0225 (10)0.0031 (10)0.0002 (9)−0.0008 (9)
C180.0490 (16)0.0341 (13)0.0258 (11)0.0033 (11)−0.0010 (11)−0.0045 (10)
C190.0451 (16)0.0352 (13)0.0270 (11)0.0002 (11)−0.0043 (10)−0.0071 (10)
C200.0440 (15)0.0324 (13)0.0257 (11)−0.0062 (11)−0.0058 (10)−0.0020 (10)
O1—C61.351 (2)C9—H9C0.9800
O1—C51.486 (2)C11—C121.410 (3)
N1—C11.155 (3)C11—H110.9500
N2—C31.159 (3)C12—C131.369 (3)
N3—C101.164 (3)C12—H120.9500
N4—C161.306 (2)C13—C141.407 (3)
N4—C201.480 (3)C13—H130.9500
N4—C171.481 (3)C14—C151.369 (3)
C1—C21.424 (3)C14—H140.9500
C2—C61.388 (3)C15—C161.404 (3)
C2—C31.414 (3)C15—H150.9500
C4—C111.374 (3)C16—H160.9500
C4—C71.417 (3)C17—C181.528 (3)
C4—C51.512 (3)C17—H17A0.9900
C5—C81.519 (3)C17—H17B0.9900
C5—C91.522 (3)C18—C191.529 (3)
C6—C71.401 (3)C18—H18A0.9900
C7—C101.408 (3)C18—H18B0.9900
C8—H8A0.9800C19—C201.516 (3)
C8—H8B0.9800C19—H19A0.9900
C8—H8C0.9800C19—H19B0.9900
C9—H9A0.9800C20—H20A0.9900
C9—H9B0.9800C20—H20B0.9900
C6—O1—C5109.54 (15)C13—C12—C11126.1 (2)
C16—N4—C20124.81 (18)C13—C12—H12116.9
C16—N4—C17124.30 (17)C11—C12—H12116.9
C20—N4—C17110.87 (16)C12—C13—C14122.1 (2)
N1—C1—C2179.2 (2)C12—C13—H13118.9
C6—C2—C3119.7 (2)C14—C13—H13118.9
C6—C2—C1121.06 (19)C15—C14—C13126.4 (2)
C3—C2—C1119.22 (19)C15—C14—H14116.8
N2—C3—C2178.5 (2)C13—C14—H14116.8
C11—C4—C7126.6 (2)C14—C15—C16120.2 (2)
C11—C4—C5127.16 (18)C14—C15—H15119.9
C7—C4—C5106.25 (17)C16—C15—H15119.9
O1—C5—C4103.67 (15)N4—C16—C15125.1 (2)
O1—C5—C8105.46 (15)N4—C16—H16117.5
C4—C5—C8113.37 (17)C15—C16—H16117.5
O1—C5—C9105.15 (16)N4—C17—C18104.45 (16)
C4—C5—C9112.87 (16)N4—C17—H17A110.9
C8—C5—C9114.97 (17)C18—C17—H17A110.9
O1—C6—C2117.11 (18)N4—C17—H17B110.9
O1—C6—C7110.58 (17)C18—C17—H17B110.9
C2—C6—C7132.3 (2)H17A—C17—H17B108.9
C6—C7—C10124.89 (18)C17—C18—C19104.71 (17)
C6—C7—C4109.84 (18)C17—C18—H18A110.8
C10—C7—C4124.96 (18)C19—C18—H18A110.8
C5—C8—H8A109.5C17—C18—H18B110.8
C5—C8—H8B109.5C19—C18—H18B110.8
H8A—C8—H8B109.5H18A—C18—H18B108.9
C5—C8—H8C109.5C20—C19—C18103.61 (17)
H8A—C8—H8C109.5C20—C19—H19A111.0
H8B—C8—H8C109.5C18—C19—H19A111.0
C5—C9—H9A109.5C20—C19—H19B111.0
C5—C9—H9B109.5C18—C19—H19B111.0
H9A—C9—H9B109.5H19A—C19—H19B109.0
C5—C9—H9C109.5N4—C20—C19102.91 (17)
H9A—C9—H9C109.5N4—C20—H20A111.2
H9B—C9—H9C109.5C19—C20—H20A111.2
N3—C10—C7177.4 (2)N4—C20—H20B111.2
C4—C11—C12126.8 (2)C19—C20—H20B111.2
C4—C11—H11116.6H20A—C20—H20B109.1
C12—C11—H11116.6
C6—O1—C5—C4−3.51 (19)C5—C4—C7—C6−1.4 (2)
C6—O1—C5—C8−122.90 (17)C11—C4—C7—C103.6 (3)
C6—O1—C5—C9115.19 (17)C5—C4—C7—C10−175.33 (18)
C11—C4—C5—O1−176.05 (18)C7—C4—C11—C12178.9 (2)
C7—C4—C5—O12.9 (2)C5—C4—C11—C12−2.4 (3)
C11—C4—C5—C8−62.2 (3)C4—C11—C12—C13179.6 (2)
C7—C4—C5—C8116.70 (18)C11—C12—C13—C14−178.23 (19)
C11—C4—C5—C970.7 (3)C12—C13—C14—C15−179.8 (2)
C7—C4—C5—C9−110.35 (18)C13—C14—C15—C16−177.29 (19)
C5—O1—C6—C2−178.33 (17)C20—N4—C16—C15−176.28 (19)
C5—O1—C6—C72.8 (2)C17—N4—C16—C155.4 (3)
C3—C2—C6—O1−10.6 (3)C14—C15—C16—N4−178.18 (19)
C1—C2—C6—O1170.85 (18)C16—N4—C17—C18176.39 (18)
C3—C2—C6—C7168.0 (2)C20—N4—C17—C18−2.2 (2)
C1—C2—C6—C7−10.6 (3)N4—C17—C18—C19−20.2 (2)
O1—C6—C7—C10173.07 (18)C17—C18—C19—C2034.8 (2)
C2—C6—C7—C10−5.5 (4)C16—N4—C20—C19−154.84 (18)
O1—C6—C7—C4−0.9 (2)C17—N4—C20—C1923.7 (2)
C2—C6—C7—C4−179.5 (2)C18—C19—C20—N4−35.4 (2)
C11—C4—C7—C6177.55 (19)
D—H···AD—HH···AD···AD—H···A
C12—H12···N3i0.952.493.379 (3)156
C17—H17A···N1ii0.992.613.402 (3)137
C20—H20B···N2ii0.992.563.316 (3)133
?s(I)(II)a(III)b(IV)
C2—C61.388 (3)1.388 (5)1.389 (6)1.359 (4)
C6—C71.401 (3)1.412 (5)1.390 (5)1.445 (4)
C4—C71.417 (3)1.402 (5)1.426 (6)1.343 (4)
C4—C111.374 (3)1.405 (5)1.366 (5)1.472 (4)
C11—C121.410 (3)1.397 (5)1.402 (6)
C12—C131.369 (3)1.384 (5)1.381 (5)
C13—C141.407 (3)1.397 (5)1.396 (6)
C14—C151.369 (3)
C15—C161.404 (3)
N4—CTc1.306 (2)1.317 (4)1.315 (5)
C6—O11.351 (2)1.341 (4)1.360 (4)1.333 (3)
C5—O11.486 (2)1.482 (4)1.489 (8)1.481 (4)
C4—C7—C6109.84 (18)108.7 (3)109.7 (4)109.4 (2)
C7—C6—C2132.3 (2)131.7 (3)133.7 (4)131.3 (3)
C11—C4—C7126.6 (2)125.2 (3)126.6 (4)128.6 (3)
C4—C11—C12—C13179.6 (2)-177.4 (4)178.1 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12⋯N3i0.952.493.379 (3)156
C17—H17A⋯N1ii0.992.613.402 (3)137
C20—H20B⋯N2ii0.992.563.316 (3)133

Symmetry codes: (i) ; (ii) .

Table 2

Selected bond lengths and angles (Å,°) in the title compound and related compounds

Compound (I) is the title compound, (II) is the closely related buta-1,3-dienyl equivalent (Gainsford et al., 2008c), (III) is the piperidin-1-yl equivalent of (II) (Gainsford et al., 2008b ▶) and (IV) is the starting acceptor molecule 2-dicyanomethylene-4,5,5-trimethyl-2,5-dihydro-furan-3-carbonitrile (Li et al., 2005 ▶)

 (I)(II)a(III)b(IV)
C2—C61.388 (3)1.388 (5)1.389 (6)1.359 (4)
C6—C71.401 (3)1.412 (5)1.390 (5)1.445 (4)
C4—C71.417 (3)1.402 (5)1.426 (6)1.343 (4)
C4—C111.374 (3)1.405 (5)1.366 (5)1.472 (4)
C11—C121.410 (3)1.397 (5)1.402 (6)
C12—C131.369 (3)1.384 (5)1.381 (5)
C13—C141.407 (3)1.397 (5)1.396 (6)
C14—C151.369 (3)
C15—C161.404 (3)
N4—CTc1.306 (2)1.317 (4)1.315 (5)
C6—O11.351 (2)1.341 (4)1.360 (4)1.333 (3)
C5—O11.486 (2)1.482 (4)1.489 (8)1.481 (4)
C4—C7—C6109.84 (18)108.7 (3)109.7 (4)109.4 (2)
C7—C6—C2132.3 (2)131.7 (3)133.7 (4)131.3 (3)
C11—C4—C7126.6 (2)125.2 (3)126.6 (4)128.6 (3)
C4—C11—C12—C13179.6 (2)−177.4 (4)178.1 (4)

Notes: (a) Larger s.u. values reflect crystal quality; (b) Average of two independent molecules; (c) CT is the terminal atom of the polyene chain.

  4 in total

1.  Geometry and bond-length alternation in nonlinear optical materials. I. Standard parameters in two precursors.

Authors:  Graeme J Gainsford; M Delower H Bhuiyan; Andrew J Kay
Journal:  Acta Crystallogr C       Date:  2007-10-13       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  2-{3-Cyano-5,5-dimethyl-4-[4-(piperidin-1-yl)buta-1,3-dien-yl]-2,5-dihydro-furan-2-yl-idene}malononitrile.

Authors:  Graeme J Gainsford; M Delower H Bhuiyan; Andrew J Kay; Anthony L Spek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23

4.  2-{3-Cyano-5,5-dimethyl-4-[4-(pyrrol-idin-1-yl)buta-1,3-dien-yl]-2,5-dihydro-furan-2-yl-idene}malononitrile dichloro-methane solvate.

Authors:  Graeme J Gainsford; M Delower H Bhuiyan; Andrew J Kay; Ward T Robinson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  4 in total

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