Literature DB >> 21200976

2-O-Benzhydryl-3,4-(S)-O-benzyl-idene-d-lyxono-1,4-lactone.

Sarah F Jenkinson, Sebastian D Rule, Kathrine V Booth, George W J Fleet, David J Watkin, Sigthor Petursson.   

Abstract

X-ray crystallography unequivocally showed that protection of the free hydroxyl group of 3,5-O-benzyl-idene-d-lyxono-1,4-lactone with diphenyl-diazo-methane proceeded with retention of configuration to give the title compound, C(25)H(22)O(5). The crystal structure consists of layers of inter-locked mol-ecules lying parallel to the a axis.

Entities:  

Year:  2008        PMID: 21200976      PMCID: PMC2914987          DOI: 10.1107/S1600536807059739

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature see: Jackson et al. (1982 ▶); Petursson & Webber (1982 ▶); Petursson et al. (2007 ▶); Petursson (2001 ▶, 2003 ▶); Draths et al. (1992 ▶); Collins & Ferrier (1995 ▶); Görbitz (1999 ▶); Larson (1970 ▶).

Experimental

Crystal data

C25H22O5 M = 402.45 Orthorhombic, a = 9.2805 (2) Å b = 11.3538 (2) Å c = 19.2493 (4) Å V = 2028.28 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.50 × 0.25 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.66, T max = 0.99 17577 measured reflections 2610 independent reflections 2218 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.077 S = 0.97 2610 reflections 272 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.26 e Å−3 Data collection: COLLECT (Nonius, 1997 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807059739/lh2567sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807059739/lh2567Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H22O5Dx = 1.318 Mg m3
Mr = 402.45Mo Kα radiation λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 2585 reflections
a = 9.2805 (2) Åθ = 5–27º
b = 11.3538 (2) ŵ = 0.09 mm1
c = 19.2493 (4) ÅT = 150 K
V = 2028.28 (7) Å3Plate, colourless
Z = 40.50 × 0.25 × 0.10 mm
F000 = 848
Area diffractometer2218 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.036
T = 150 Kθmax = 27.5º
ω scansθmin = 5.1º
Absorption correction: multi-scan(DENZO/SCALEPACK; Otwinowski & Minor, 1997)h = −12→12
Tmin = 0.66, Tmax = 0.99k = −14→14
17577 measured reflectionsl = −24→24
2610 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.031  Method = Modified Sheldrick w = 1/[σ2(F2) + ( 0.05P)2 + 0.05P] ,where P = (max(Fo2,0) + 2Fc2)/3
wR(F2) = 0.077(Δ/σ)max = 0.001
S = 0.97Δρmax = 0.29 e Å3
2610 reflectionsΔρmin = −0.26 e Å3
272 parametersExtinction correction: Larson (1970), Equation 22
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 450 (70)
xyzUiso*/Ueq
O10.56592 (13)0.07905 (11)0.41774 (6)0.0309
C20.47068 (18)0.13932 (14)0.44062 (8)0.0235
O30.42559 (13)0.23855 (10)0.40913 (5)0.0269
C40.31374 (18)0.29565 (15)0.45100 (8)0.0256
C50.33742 (17)0.24620 (13)0.52366 (8)0.0217
C60.38488 (17)0.12108 (13)0.50693 (8)0.0217
O70.47250 (12)0.06450 (9)0.55632 (6)0.0225
C80.39489 (18)0.02870 (14)0.61807 (8)0.0231
C90.30274 (18)−0.07850 (14)0.60446 (7)0.0226
C100.16512 (18)−0.08515 (15)0.63305 (8)0.0268
C110.08162 (19)−0.18516 (17)0.62452 (9)0.0330
C120.1333 (2)−0.27901 (16)0.58623 (9)0.0343
C130.2677 (2)−0.27227 (15)0.55607 (9)0.0317
C140.35179 (19)−0.17234 (14)0.56436 (8)0.0256
C150.50938 (17)0.01400 (14)0.67385 (8)0.0244
C160.5410 (2)0.11037 (15)0.71553 (8)0.0322
C170.6506 (2)0.10513 (18)0.76443 (9)0.0411
C180.7288 (2)0.00261 (19)0.77220 (9)0.0398
C190.6970 (2)−0.09474 (18)0.73217 (9)0.0374
C200.58660 (19)−0.08899 (16)0.68292 (8)0.0307
O210.45628 (12)0.30226 (9)0.55734 (5)0.0220
C220.44412 (18)0.42778 (13)0.55495 (8)0.0222
O230.45259 (12)0.46674 (9)0.48571 (5)0.0252
C240.33004 (18)0.42708 (14)0.44694 (9)0.0266
C250.56836 (17)0.47882 (14)0.59490 (7)0.0215
C260.62747 (18)0.41894 (15)0.65075 (8)0.0271
C270.7432 (2)0.46592 (16)0.68709 (9)0.0325
C280.7986 (2)0.57411 (16)0.66872 (8)0.0324
C290.73958 (18)0.63525 (15)0.61357 (9)0.0312
C300.62512 (17)0.58803 (14)0.57660 (9)0.0259
H410.22010.26950.43290.0329*
H510.24820.24460.55180.0264*
H610.29890.07240.49830.0229*
H810.32720.09310.63470.0229*
H1010.1291−0.01820.65910.0311*
H111−0.0116−0.19210.64440.0416*
H1210.0759−0.34580.58220.0375*
H1310.3037−0.33450.53040.0389*
H1410.4444−0.16930.54360.0295*
H1610.48950.18150.71100.0385*
H1710.67010.17220.79280.0503*
H1810.8027−0.00070.80510.0490*
H1910.7479−0.16680.73680.0442*
H2010.5650−0.15760.65650.0324*
H2210.34860.44850.57660.0278*
H2410.34310.45110.39950.0304*
H2420.24540.46440.46570.0301*
H2610.59000.34340.66510.0326*
H2710.78100.41880.72460.0403*
H2810.87570.60490.69150.0371*
H2910.78030.70780.60240.0400*
H3010.58850.63170.53790.0304*
U11U22U33U12U13U23
O10.0281 (6)0.0319 (6)0.0328 (6)0.0032 (6)−0.0004 (6)−0.0061 (6)
C20.0221 (8)0.0219 (8)0.0267 (8)−0.0032 (8)−0.0045 (7)−0.0031 (7)
O30.0295 (6)0.0255 (6)0.0259 (5)−0.0002 (5)−0.0004 (5)0.0013 (5)
C40.0196 (8)0.0247 (8)0.0324 (8)−0.0007 (7)−0.0037 (7)−0.0007 (7)
C50.0149 (7)0.0200 (8)0.0303 (8)−0.0027 (7)−0.0003 (7)0.0007 (7)
C60.0189 (8)0.0172 (7)0.0290 (8)−0.0031 (7)−0.0036 (7)0.0015 (7)
O70.0193 (6)0.0208 (5)0.0274 (5)−0.0006 (5)−0.0007 (5)0.0031 (5)
C80.0225 (8)0.0198 (7)0.0272 (7)−0.0021 (7)0.0016 (7)−0.0001 (7)
C90.0230 (8)0.0214 (8)0.0234 (7)−0.0016 (7)−0.0039 (7)0.0035 (7)
C100.0242 (9)0.0301 (9)0.0262 (8)−0.0011 (8)−0.0030 (7)0.0021 (7)
C110.0234 (9)0.0414 (11)0.0343 (8)−0.0109 (9)−0.0040 (8)0.0100 (8)
C120.0366 (11)0.0280 (9)0.0383 (9)−0.0130 (8)−0.0142 (9)0.0106 (8)
C130.0401 (10)0.0211 (8)0.0340 (8)0.0005 (8)−0.0103 (9)0.0004 (8)
C140.0247 (9)0.0234 (8)0.0287 (8)0.0005 (7)−0.0020 (7)0.0018 (7)
C150.0226 (8)0.0274 (8)0.0233 (7)−0.0059 (7)0.0007 (7)0.0016 (7)
C160.0424 (11)0.0264 (9)0.0280 (8)−0.0085 (9)−0.0015 (9)0.0021 (7)
C170.0514 (12)0.0423 (11)0.0297 (8)−0.0159 (11)−0.0102 (9)0.0005 (8)
C180.0333 (10)0.0584 (13)0.0278 (8)−0.0122 (10)−0.0072 (8)0.0076 (9)
C190.0290 (9)0.0475 (12)0.0358 (9)0.0027 (10)−0.0026 (8)0.0066 (9)
C200.0288 (9)0.0321 (9)0.0313 (8)0.0019 (8)−0.0037 (8)−0.0036 (8)
O210.0221 (6)0.0156 (5)0.0283 (5)−0.0016 (5)−0.0024 (5)−0.0003 (5)
C220.0226 (8)0.0158 (7)0.0283 (8)0.0007 (7)0.0033 (7)0.0007 (7)
O230.0260 (6)0.0223 (5)0.0272 (5)−0.0045 (5)−0.0028 (5)0.0044 (5)
C240.0230 (8)0.0244 (8)0.0325 (8)−0.0016 (8)−0.0054 (8)0.0038 (8)
C250.0188 (8)0.0198 (7)0.0261 (7)0.0004 (7)0.0056 (7)−0.0043 (7)
C260.0316 (9)0.0252 (8)0.0246 (7)−0.0035 (8)0.0042 (8)−0.0012 (7)
C270.0351 (10)0.0353 (10)0.0271 (8)0.0007 (9)−0.0012 (8)−0.0033 (8)
C280.0261 (9)0.0366 (10)0.0345 (9)−0.0067 (8)−0.0009 (8)−0.0098 (8)
C290.0266 (9)0.0240 (9)0.0428 (9)−0.0057 (8)0.0038 (9)−0.0029 (8)
C300.0219 (8)0.0214 (8)0.0344 (8)−0.0001 (7)0.0038 (7)−0.0007 (7)
O1—C21.2015 (19)C15—C201.382 (2)
C2—O31.3461 (19)C16—C171.387 (3)
C2—C61.519 (2)C16—H1610.942
O3—C41.465 (2)C17—C181.380 (3)
C4—C51.523 (2)C17—H1710.955
C4—C241.502 (2)C18—C191.379 (3)
C4—H410.982C18—H1810.934
C5—C61.522 (2)C19—C201.397 (2)
C5—O211.4291 (18)C19—H1910.948
C5—H510.990C20—H2010.952
C6—O71.4063 (18)O21—C221.4303 (18)
C6—H610.984C22—O231.4065 (18)
O7—C81.4482 (19)C22—C251.502 (2)
C8—C91.510 (2)C22—H2211.008
C8—C151.520 (2)O23—C241.4329 (19)
C8—H811.016C24—H2410.961
C9—C101.393 (2)C24—H2420.962
C9—C141.392 (2)C25—C261.385 (2)
C10—C111.385 (2)C25—C301.393 (2)
C10—H1010.970C26—C271.388 (2)
C11—C121.382 (3)C26—H2610.966
C11—H1110.949C27—C281.378 (2)
C12—C131.377 (3)C27—H2710.965
C12—H1210.930C28—C291.382 (2)
C13—C141.386 (2)C28—H2810.909
C13—H1310.925C29—C301.386 (2)
C14—H1410.949C29—H2910.931
C15—C161.388 (2)C30—H3010.958
O1—C2—O3122.70 (15)C16—C15—C20118.96 (15)
O1—C2—C6128.04 (15)C15—C16—C17120.88 (17)
O3—C2—C6109.25 (13)C15—C16—H161121.0
C2—O3—C4110.05 (12)C17—C16—H161118.1
O3—C4—C5103.88 (12)C16—C17—C18119.71 (17)
O3—C4—C24109.85 (14)C16—C17—H171119.6
C5—C4—C24113.54 (14)C18—C17—H171120.7
O3—C4—H41107.3C17—C18—C19120.16 (17)
C5—C4—H41110.0C17—C18—H181119.6
C24—C4—H41111.8C19—C18—H181120.3
C4—C5—C6101.04 (12)C18—C19—C20119.92 (18)
C4—C5—O21111.33 (13)C18—C19—H191122.1
C6—C5—O21106.76 (12)C20—C19—H191118.0
C4—C5—H51112.9C19—C20—C15120.35 (17)
C6—C5—H51109.9C19—C20—H201118.6
O21—C5—H51114.0C15—C20—H201121.1
C5—C6—C2101.68 (12)C5—O21—C22111.61 (12)
C5—C6—O7116.79 (13)O21—C22—O23109.84 (12)
C2—C6—O7109.11 (12)O21—C22—C25107.90 (13)
C5—C6—H61109.0O23—C22—C25108.72 (13)
C2—C6—H61111.1O21—C22—H221106.8
O7—C6—H61109.0O23—C22—H221111.6
C6—O7—C8113.30 (11)C25—C22—H221111.9
O7—C8—C9111.43 (12)C22—O23—C24110.51 (12)
O7—C8—C15105.25 (12)C4—C24—O23111.41 (13)
C9—C8—C15115.46 (13)C4—C24—H241110.2
O7—C8—H81111.4O23—C24—H241107.8
C9—C8—H81106.5C4—C24—H242109.6
C15—C8—H81106.8O23—C24—H242108.3
C8—C9—C10119.62 (14)H241—C24—H242109.5
C8—C9—C14121.86 (14)C22—C25—C26120.79 (14)
C10—C9—C14118.52 (15)C22—C25—C30120.28 (14)
C9—C10—C11120.72 (16)C26—C25—C30118.92 (15)
C9—C10—H101118.6C25—C26—C27120.58 (16)
C11—C10—H101120.7C25—C26—H261121.1
C10—C11—C12120.09 (17)C27—C26—H261118.4
C10—C11—H111122.1C26—C27—C28120.13 (17)
C12—C11—H111117.8C26—C27—H271116.4
C11—C12—C13119.76 (17)C28—C27—H271123.4
C11—C12—H121118.3C27—C28—C29119.82 (17)
C13—C12—H121121.9C27—C28—H281120.9
C12—C13—C14120.44 (16)C29—C28—H281119.3
C12—C13—H131120.7C28—C29—C30120.25 (16)
C14—C13—H131118.9C28—C29—H291117.4
C9—C14—C13120.39 (15)C30—C29—H291122.3
C9—C14—H141120.1C25—C30—C29120.29 (16)
C13—C14—H141119.5C25—C30—H301121.6
C8—C15—C16117.99 (15)C29—C30—H301118.1
C8—C15—C20123.00 (14)
D—H···AD—HH···AD···AD—H···A
C4—H41···O21i0.982.593.502 (2)155
C24—H242···O7i0.962.593.320 (2)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H41⋯O21i0.982.593.502 (2)155
C24—H242⋯O7i0.962.593.320 (2)133

Symmetry code: (i) .

  3 in total

1.  Tin(II) chloride catalyzed reactions of diazodiphenylmethane with vicinal diols in an aprotic solvent. The reactions with cis- and trans-1,2-cyclohexanediols and 1,2-propanediol.

Authors:  Sigthor Petursson
Journal:  Carbohydr Res       Date:  2003-04-22       Impact factor: 2.104

2.  What is the best crystal size for collection of X-ray data? Refinement of the structure of glycyl-L-serine based on data from a very large crystal.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01

3.  New evidence for the mechanism of the tin(II) chloride catalyzed reactions of vicinal diols with diazodiphenylmethane in 1,2-dimethoxyethane.

Authors:  S Pétursson
Journal:  Carbohydr Res       Date:  2001-04-12       Impact factor: 2.104

  3 in total
  1 in total

1.  2-O-Benzhydryl-3,4-(S)-O-benzyl-idene-d-xylono-1,4-lactone.

Authors:  Sarah F Jenkinson; Sebastian D Rule; Kathrine V Booth; George W J Fleet; David J Watkin; Sigthor Petursson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-07
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.