Literature DB >> 21200952

Dibenzyl 3,3',4,4'-tetra-methyl-5,5'-(ethynedi-yl)bis-(pyrrole-2-carboxyl-ate).

Hillary K Tanui1, Frank R Fronczek, M Graça H Vicente.   

Abstract

The title mol-ecule, C(30)H(28)N(2)O(4), has crystallographic twofold rotation symmetry, with the pyrrole planes forming a dihedral angle of 40.49 (4)°. The pyrrole N-H donor and adjacent ester carbonyl acceptor form R(2) (2)(10) hydrogen-bonded rings about inversion centers, leading to chains of hydrogen-bonded mol-ecules along [001].

Entities:  

Year:  2007        PMID: 21200952      PMCID: PMC2915032          DOI: 10.1107/S1600536807061739

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature, see: Chinchilla & Najera (2007 ▶); Black et al. (1999 ▶); Etter (1990 ▶); Vogel (1996 ▶). For related structures, see: Xie et al. (1996 ▶); Weghorn et al. (1995 ▶).

Experimental

Crystal data

C30H28N2O4 M = 480.54 Monoclinic, a = 19.340 (2) Å b = 9.8955 (10) Å c = 13.8495 (15) Å β = 110.217 (6)° V = 2487.2 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 90 K 0.30 × 0.22 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer with Oxford Cryostream Absorption correction: none 28071 measured reflections 4748 independent reflections 3948 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.124 S = 1.03 4748 reflections 168 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.39 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807061739/dn2299sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807061739/dn2299Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C30H28N2O4F000 = 1016
Mr = 480.54Dx = 1.283 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4869 reflections
a = 19.340 (2) Åθ = 2.5–33.1º
b = 9.8955 (10) ŵ = 0.09 mm1
c = 13.8495 (15) ÅT = 90 K
β = 110.217 (6)ºPrism, colorless
V = 2487.2 (5) Å30.30 × 0.22 × 0.15 mm
Z = 4
Nonius KappaCCD (with Oxford Cryostream) diffractometer3948 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.022
Monochromator: graphiteθmax = 33.2º
T = 90 Kθmin = 2.6º
ω scans with κ offsetsh = −29→29
Absorption correction: nonek = −15→15
28071 measured reflectionsl = −21→21
4748 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.124  w = 1/[σ2(Fo2) + (0.067P)2 + 1.378P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
4748 reflectionsΔρmax = 0.46 e Å3
168 parametersΔρmin = −0.39 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.38808 (4)0.18151 (7)0.63308 (5)0.01536 (14)
O20.45716 (4)0.03182 (7)0.58415 (5)0.01670 (14)
N10.46808 (4)0.21012 (7)0.43512 (5)0.01204 (14)
H1N0.4897 (7)0.1328 (14)0.4339 (10)0.014*
C10.43250 (5)0.24465 (9)0.50220 (6)0.01179 (15)
C20.40633 (5)0.37712 (9)0.48108 (6)0.01253 (15)
C30.42701 (5)0.42307 (8)0.39832 (6)0.01261 (15)
C40.46445 (5)0.31725 (8)0.37111 (6)0.01224 (15)
C50.49073 (5)0.31065 (9)0.28744 (6)0.01342 (15)
C60.42810 (5)0.14317 (8)0.57551 (6)0.01202 (15)
C70.36367 (5)0.45910 (9)0.53229 (7)0.01701 (17)
H7A0.39740.51870.58380.026*
H7B0.33890.39850.56600.026*
H7C0.32680.51370.48060.026*
C80.40864 (6)0.55667 (9)0.34548 (7)0.01793 (17)
H8A0.43580.56730.29790.027*
H8B0.42250.62920.39680.027*
H8C0.35560.56120.30710.027*
C90.37901 (5)0.07780 (9)0.70202 (7)0.01577 (16)
H9A0.42740.05530.75430.019*
H9B0.3584−0.00520.66270.019*
C100.32768 (5)0.13018 (9)0.75362 (6)0.01280 (15)
C110.26606 (5)0.20803 (9)0.70116 (7)0.01592 (16)
H110.25720.23370.63180.019*
C120.21747 (5)0.24831 (10)0.74984 (8)0.01892 (18)
H120.17610.30270.71410.023*
C130.22929 (6)0.20909 (11)0.85086 (8)0.0228 (2)
H130.19540.23460.88350.027*
C140.29082 (6)0.13248 (11)0.90349 (8)0.0235 (2)
H140.29920.10580.97250.028*
C150.34045 (5)0.09438 (10)0.85570 (7)0.01773 (17)
H150.38310.04380.89280.021*
U11U22U33U12U13U23
O10.0226 (3)0.0130 (3)0.0161 (3)0.0032 (2)0.0138 (2)0.0026 (2)
O20.0229 (3)0.0139 (3)0.0171 (3)0.0063 (2)0.0118 (2)0.0028 (2)
N10.0154 (3)0.0107 (3)0.0129 (3)0.0023 (2)0.0085 (2)0.0010 (2)
C10.0147 (3)0.0117 (3)0.0115 (3)0.0011 (3)0.0077 (3)−0.0001 (3)
C20.0151 (3)0.0117 (3)0.0128 (3)0.0017 (3)0.0074 (3)−0.0004 (3)
C30.0151 (4)0.0111 (3)0.0132 (3)0.0015 (3)0.0069 (3)0.0005 (3)
C40.0145 (3)0.0119 (3)0.0124 (3)0.0002 (3)0.0073 (3)0.0006 (3)
C50.0149 (4)0.0125 (3)0.0147 (3)0.0001 (3)0.0075 (3)0.0000 (3)
C60.0142 (3)0.0127 (3)0.0107 (3)0.0010 (3)0.0063 (3)0.0001 (3)
C70.0224 (4)0.0148 (4)0.0183 (4)0.0043 (3)0.0127 (3)−0.0008 (3)
C80.0241 (4)0.0128 (4)0.0192 (4)0.0035 (3)0.0105 (3)0.0038 (3)
C90.0220 (4)0.0145 (4)0.0152 (3)0.0034 (3)0.0119 (3)0.0038 (3)
C100.0159 (4)0.0120 (3)0.0128 (3)−0.0016 (3)0.0080 (3)−0.0005 (3)
C110.0158 (4)0.0180 (4)0.0145 (3)−0.0009 (3)0.0060 (3)−0.0004 (3)
C120.0155 (4)0.0186 (4)0.0248 (4)−0.0006 (3)0.0095 (3)−0.0019 (3)
C130.0274 (5)0.0211 (4)0.0285 (5)−0.0009 (4)0.0209 (4)−0.0028 (4)
C140.0351 (5)0.0238 (5)0.0190 (4)0.0027 (4)0.0188 (4)0.0021 (4)
C150.0240 (4)0.0169 (4)0.0150 (4)0.0026 (3)0.0101 (3)0.0020 (3)
O1—C61.3436 (10)C8—H8A0.9800
O1—C91.4530 (10)C8—H8B0.9800
O2—C61.2240 (10)C8—H8C0.9800
N1—C41.3680 (11)C9—C101.5018 (12)
N1—C11.3767 (10)C9—H9A0.9900
N1—H1N0.875 (14)C9—H9B0.9900
C1—C21.3992 (12)C10—C111.3940 (12)
C1—C61.4514 (11)C10—C151.3941 (12)
C2—C31.4133 (11)C11—C121.3910 (13)
C2—C71.4987 (12)C11—H110.9500
C3—C41.3969 (12)C12—C131.3925 (15)
C3—C81.4932 (12)C12—H120.9500
C4—C51.4185 (12)C13—C141.3866 (16)
C5—C5i1.2088 (17)C13—H130.9500
C7—H7A0.9800C14—C151.3931 (13)
C7—H7B0.9800C14—H140.9500
C7—H7C0.9800C15—H150.9500
C6—O1—C9114.55 (7)H8A—C8—H8B109.5
C4—N1—C1108.62 (7)C3—C8—H8C109.5
C4—N1—H1N125.7 (8)H8A—C8—H8C109.5
C1—N1—H1N125.7 (8)H8B—C8—H8C109.5
N1—C1—C2108.70 (7)O1—C9—C10108.58 (7)
N1—C1—C6117.66 (7)O1—C9—H9A110.0
C2—C1—C6133.63 (7)C10—C9—H9A110.0
C1—C2—C3106.71 (7)O1—C9—H9B110.0
C1—C2—C7128.81 (8)C10—C9—H9B110.0
C3—C2—C7124.47 (8)H9A—C9—H9B108.4
C4—C3—C2107.22 (7)C11—C10—C15119.27 (8)
C4—C3—C8126.09 (8)C11—C10—C9121.96 (7)
C2—C3—C8126.60 (8)C15—C10—C9118.70 (8)
N1—C4—C3108.75 (7)C12—C11—C10120.32 (8)
N1—C4—C5122.75 (8)C12—C11—H11119.8
C3—C4—C5128.34 (8)C10—C11—H11119.8
C5i—C5—C4175.61 (10)C11—C12—C13120.22 (9)
O2—C6—O1122.38 (8)C11—C12—H12119.9
O2—C6—C1123.73 (8)C13—C12—H12119.9
O1—C6—C1113.89 (7)C14—C13—C12119.58 (9)
C2—C7—H7A109.5C14—C13—H13120.2
C2—C7—H7B109.5C12—C13—H13120.2
H7A—C7—H7B109.5C13—C14—C15120.35 (9)
C2—C7—H7C109.5C13—C14—H14119.8
H7A—C7—H7C109.5C15—C14—H14119.8
H7B—C7—H7C109.5C14—C15—C10120.22 (9)
C3—C8—H8A109.5C14—C15—H15119.9
C3—C8—H8B109.5C10—C15—H15119.9
C4—N1—C1—C2−0.61 (10)C9—O1—C6—C1176.08 (7)
C4—N1—C1—C6178.33 (7)N1—C1—C6—O23.67 (13)
N1—C1—C2—C30.08 (10)C2—C1—C6—O2−177.72 (9)
C6—C1—C2—C3−178.63 (9)N1—C1—C6—O1−175.51 (7)
N1—C1—C2—C7179.36 (9)C2—C1—C6—O13.10 (14)
C6—C1—C2—C70.65 (16)C6—O1—C9—C10−174.76 (7)
C1—C2—C3—C40.47 (10)O1—C9—C10—C1138.88 (11)
C7—C2—C3—C4−178.85 (8)O1—C9—C10—C15−144.09 (8)
C1—C2—C3—C8177.24 (9)C15—C10—C11—C12−0.68 (14)
C7—C2—C3—C8−2.09 (14)C9—C10—C11—C12176.33 (9)
C1—N1—C4—C30.92 (10)C10—C11—C12—C13−1.15 (14)
C1—N1—C4—C5−174.76 (8)C11—C12—C13—C141.62 (16)
C2—C3—C4—N1−0.86 (10)C12—C13—C14—C15−0.25 (16)
C8—C3—C4—N1−177.64 (8)C13—C14—C15—C10−1.59 (16)
C2—C3—C4—C5174.51 (8)C11—C10—C15—C142.04 (14)
C8—C3—C4—C5−2.28 (15)C9—C10—C15—C14−175.07 (9)
C9—O1—C6—O2−3.12 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2ii0.875 (14)1.987 (14)2.8565 (10)172.1 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.875 (14)1.987 (14)2.8565 (10)172.1 (12)

Symmetry code: (i) .

  2 in total

1.  The Sonogashira reaction: a booming methodology in synthetic organic chemistry.

Authors:  Rafael Chinchilla; Carmen Najera
Journal:  Chem Rev       Date:  2007-02-17       Impact factor: 60.622

2.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

  2 in total
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1.  Efficient synthesis and reactions of 1,2-dipyrrolylethynes.

Authors:  Hillary K Tanui; Erhong Hao; Moses I Ihachi; Frank R Fronczek; Kevin M Smith; M Graça H Vicente
Journal:  J Porphyr Phthalocyanines       Date:  2011       Impact factor: 1.811

2.  Bis(1-tosyl-2-pyrrol-yl)ethyne.

Authors:  Hillary K Tanui; Frank R Fronczek; M Graça H Vicente
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06
  2 in total

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