Literature DB >> 21200695

Bis(1-tosyl-2-pyrrol-yl)ethyne.

Hillary K Tanui1, Frank R Fronczek, M Graça H Vicente.   

Abstract

The title mol-ecule, C(24)H(20)N(2)O(4)S(2), has crystallographic inversion symmetry with a triple-bond distance of 1.206 (2) Å. The alkyne is not quite linear, with a C-C C angle of 175.78 (16)°. The planar pyrrole rings are parallel but offset from coplanarity by 0.318 (1) Å. The conformation of the sulfonyl group with respect to the pyrrole ring is such that an O atom is nearly eclipsed with this ring, having an O-S-N-C torsion angle of 3.48 (11)°. C-H⋯O inter-actions [C⋯O 3.278 (2) Å, 136° about H] between pyrrole H and sulfonyl O atoms lead to the formation of ladder-like chains.

Entities:  

Year:  2007        PMID: 21200695      PMCID: PMC2915200          DOI: 10.1107/S1600536807062964

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see Abell et al. (1998 ▶); Knight et al. (2003 ▶); Tanui et al. (2008 ▶). For related literature, see: Vogel (1996 ▶); Chinchilla & Najera (2007 ▶); Desiraju & Steiner (1999 ▶).

Experimental

Crystal data

C24H20N2O4S2 M = 464.54 Monoclinic, a = 8.5127 (15) Å b = 16.822 (2) Å c = 7.5311 (11) Å β = 101.049 (7)° V = 1058.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 90 K 0.35 × 0.30 × 0.12 mm

Data collection

Nonius KappaCCD diffractometer (with Oxford Cryostream) Absorption correction: multi-scan (HKL SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.896, T max = 0.966 16546 measured reflections 3565 independent reflections 2995 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.100 S = 1.05 3565 reflections 147 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.54 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: HKL SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: HKL DENZO (Otwinowski & Minor, 1997 ▶) and HKL SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807062964/tk2223sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062964/tk2223Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H20N2O4S2F000 = 484
Mr = 464.54Dx = 1.458 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3246 reflections
a = 8.5127 (15) Åθ = 2.5–32.5º
b = 16.822 (2) ŵ = 0.29 mm1
c = 7.5311 (11) ÅT = 90 K
β = 101.049 (7)ºFragment, colorless
V = 1058.5 (3) Å30.35 × 0.30 × 0.12 mm
Z = 2
Nonius KappaCCD (with Oxford Cryostream) diffractometer3565 independent reflections
Radiation source: fine-focus sealed tube2995 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
T = 90 Kθmax = 32.6º
ω scans with κ offsetsθmin = 2.7º
Absorption correction: multi-scan(HKL SCALEPACK; Otwinowski & Minor 1997)h = −12→12
Tmin = 0.896, Tmax = 0.966k = −20→24
16546 measured reflectionsl = −11→11
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.037  w = 1/[σ2(Fo2) + (0.0457P)2 + 0.5421P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.100(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.39 e Å3
3565 reflectionsΔρmin = −0.54 e Å3
147 parametersExtinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0087 (19)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.17966 (3)0.588570 (17)0.18361 (4)0.01389 (9)
O10.03490 (11)0.62987 (6)0.10845 (12)0.0205 (2)
O20.21216 (11)0.51113 (5)0.12117 (12)0.01826 (19)
N10.17450 (12)0.58026 (6)0.40533 (13)0.01363 (19)
C10.04720 (14)0.60559 (7)0.48222 (16)0.0155 (2)
H1−0.04380.63420.42220.019*
C20.07578 (14)0.58208 (7)0.65906 (16)0.0159 (2)
H20.00830.59150.74370.019*
C30.22451 (15)0.54103 (7)0.69389 (15)0.0154 (2)
H30.27360.51810.80610.018*
C40.28522 (14)0.54024 (7)0.53683 (15)0.0135 (2)
C50.43438 (14)0.51145 (7)0.50710 (15)0.0143 (2)
C60.34514 (14)0.64976 (7)0.17831 (15)0.0141 (2)
C70.33400 (15)0.73131 (7)0.20914 (16)0.0169 (2)
H70.23720.75410.23060.020*
C80.46788 (16)0.77829 (7)0.20758 (17)0.0187 (2)
H80.46220.83380.22860.022*
C90.61100 (15)0.74548 (8)0.17564 (16)0.0183 (2)
C100.61811 (15)0.66412 (8)0.14272 (16)0.0172 (2)
H100.71430.64140.11930.021*
C110.48522 (14)0.61580 (7)0.14388 (15)0.0151 (2)
H110.49030.56040.12140.018*
C120.75453 (18)0.79796 (9)0.1772 (2)0.0262 (3)
H12A0.83860.76760.13510.039*
H12B0.79460.81700.30050.039*
H12C0.72380.84350.09680.039*
U11U22U33U12U13U23
S10.01179 (14)0.01874 (15)0.01119 (13)−0.00136 (10)0.00237 (9)0.00013 (9)
O10.0125 (4)0.0318 (5)0.0161 (4)0.0012 (4)0.0001 (3)0.0038 (4)
O20.0202 (4)0.0203 (4)0.0152 (4)−0.0047 (3)0.0056 (3)−0.0036 (3)
N10.0112 (4)0.0182 (5)0.0119 (4)0.0008 (3)0.0032 (3)0.0007 (3)
C10.0121 (5)0.0191 (5)0.0164 (5)0.0016 (4)0.0051 (4)0.0000 (4)
C20.0140 (5)0.0188 (5)0.0160 (5)0.0004 (4)0.0060 (4)−0.0012 (4)
C30.0150 (5)0.0186 (5)0.0136 (5)0.0005 (4)0.0051 (4)0.0003 (4)
C40.0123 (5)0.0160 (5)0.0122 (5)0.0006 (4)0.0028 (4)0.0000 (4)
C50.0141 (5)0.0173 (5)0.0118 (4)0.0001 (4)0.0032 (4)0.0012 (4)
C60.0133 (5)0.0174 (5)0.0117 (5)−0.0011 (4)0.0028 (4)0.0017 (4)
C70.0178 (5)0.0179 (5)0.0151 (5)0.0020 (4)0.0029 (4)0.0012 (4)
C80.0239 (6)0.0159 (5)0.0159 (5)−0.0012 (4)0.0030 (4)0.0015 (4)
C90.0185 (6)0.0211 (6)0.0146 (5)−0.0052 (4)0.0017 (4)0.0034 (4)
C100.0138 (5)0.0214 (6)0.0166 (5)−0.0004 (4)0.0038 (4)0.0037 (4)
C110.0154 (5)0.0161 (5)0.0141 (5)0.0003 (4)0.0039 (4)0.0017 (4)
C120.0254 (7)0.0283 (7)0.0256 (6)−0.0114 (5)0.0062 (5)0.0019 (5)
S1—O21.4298 (10)C6—C111.3907 (17)
S1—O11.4333 (10)C6—C71.3977 (17)
S1—N11.6845 (10)C7—C81.3888 (18)
S1—C61.7513 (12)C7—H70.9500
N1—C11.3900 (15)C8—C91.3997 (19)
N1—C41.4016 (15)C8—H80.9500
C1—C21.3656 (17)C9—C101.3945 (18)
C1—H10.9500C9—C121.5056 (18)
C2—C31.4218 (17)C10—C111.3944 (17)
C2—H20.9500C10—H100.9500
C3—C41.3786 (16)C11—H110.9500
C3—H30.9500C12—H12A0.9800
C4—C51.4164 (16)C12—H12B0.9800
C5—C5i1.206 (2)C12—H12C0.9800
O2—S1—O1121.17 (6)C11—C6—S1119.01 (9)
O2—S1—N1107.09 (5)C7—C6—S1119.51 (9)
O1—S1—N1104.35 (5)C8—C7—C6118.37 (11)
O2—S1—C6108.71 (6)C8—C7—H7120.8
O1—S1—C6109.91 (6)C6—C7—H7120.8
N1—S1—C6104.20 (5)C7—C8—C9121.32 (12)
C1—N1—C4108.98 (9)C7—C8—H8119.3
C1—N1—S1123.92 (8)C9—C8—H8119.3
C4—N1—S1126.76 (8)C10—C9—C8119.11 (11)
C2—C1—N1108.07 (10)C10—C9—C12120.93 (12)
C2—C1—H1126.0C8—C9—C12119.96 (12)
N1—C1—H1126.0C11—C10—C9120.54 (12)
C1—C2—C3107.85 (10)C11—C10—H10119.7
C1—C2—H2126.1C9—C10—H10119.7
C3—C2—H2126.1C6—C11—C10119.17 (11)
C4—C3—C2108.26 (10)C6—C11—H11120.4
C4—C3—H3125.9C10—C11—H11120.4
C2—C3—H3125.9C9—C12—H12A109.5
C3—C4—N1106.85 (10)C9—C12—H12B109.5
C3—C4—C5129.33 (11)H12A—C12—H12B109.5
N1—C4—C5123.67 (10)C9—C12—H12C109.5
C5i—C5—C4175.78 (16)H12A—C12—H12C109.5
C11—C6—C7121.47 (11)H12B—C12—H12C109.5
O2—S1—N1—C1−126.14 (10)O2—S1—C6—C11−9.04 (11)
O1—S1—N1—C13.48 (11)O1—S1—C6—C11−143.78 (9)
C6—S1—N1—C1118.78 (10)N1—S1—C6—C11104.90 (10)
O2—S1—N1—C446.48 (11)O2—S1—C6—C7171.15 (9)
O1—S1—N1—C4176.09 (10)O1—S1—C6—C736.41 (11)
C6—S1—N1—C4−68.61 (11)N1—S1—C6—C7−74.92 (10)
C4—N1—C1—C2−0.14 (13)C11—C6—C7—C8−1.01 (17)
S1—N1—C1—C2173.61 (9)S1—C6—C7—C8178.80 (9)
N1—C1—C2—C3−0.01 (14)C6—C7—C8—C90.15 (18)
C1—C2—C3—C40.16 (14)C7—C8—C9—C100.76 (18)
C2—C3—C4—N1−0.24 (13)C7—C8—C9—C12−179.25 (12)
C2—C3—C4—C5175.18 (12)C8—C9—C10—C11−0.83 (18)
C1—N1—C4—C30.23 (13)C12—C9—C10—C11179.17 (11)
S1—N1—C4—C3−173.29 (9)C7—C6—C11—C100.93 (17)
C1—N1—C4—C5−175.51 (11)S1—C6—C11—C10−178.88 (9)
S1—N1—C4—C510.97 (17)C9—C10—C11—C60.01 (17)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2ii0.952.533.278 (2)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.952.533.278 (2)136

Symmetry code: (i) x, y, z + 1.

  3 in total

1.  The Sonogashira reaction: a booming methodology in synthetic organic chemistry.

Authors:  Rafael Chinchilla; Carmen Najera
Journal:  Chem Rev       Date:  2007-02-17       Impact factor: 60.622

2.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

3.  Dibenzyl 3,3',4,4'-tetra-methyl-5,5'-(ethynedi-yl)bis-(pyrrole-2-carboxyl-ate).

Authors:  Hillary K Tanui; Frank R Fronczek; M Graça H Vicente
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06
  3 in total
  2 in total

1.  Efficient synthesis and reactions of 1,2-dipyrrolylethynes.

Authors:  Hillary K Tanui; Erhong Hao; Moses I Ihachi; Frank R Fronczek; Kevin M Smith; M Graça H Vicente
Journal:  J Porphyr Phthalocyanines       Date:  2011       Impact factor: 1.811

2.  1-[(4,5-Dimethyl-cyclo-hexa-1,4-dien-1-yl)sulfon-yl]-4-methyl-benzene.

Authors:  Ryan H Gray; Frank R Fronczek; M Graça H Vicente
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.