Literature DB >> 21200940

3,4-Dicyano-phenyl 2,3,4,6-tetra-O-acetyl-α-d-glucopyran-oside.

Yuejing Bin, Fuqun Zhao, Fushi Zhang, Ru-Ji Wang.   

Abstract

The title compound, C(22)H(22)N(2)O(10), was prepared by the glycosidation method through nitrite displacement on substituted nitro-phthalonitrile. The mol-ecule contains a benzene ring, two nitrile groups and an acetyl-protected d-glucose fragment which adopts a chair conformation. The absolute configuration was determined by the use of d-glucose as starting material. All substituents of the protected sugar are in equatorial positions, with the exclusive presence of the α-anomer. The crystal packing is stabilized by C-H⋯O and C-H⋯N hydrogen-bonding inter-actions.

Entities:  

Year:  2007        PMID: 21200940      PMCID: PMC2915021          DOI: 10.1107/S1600536807049860

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Alvarez-Mico et al. (2006 ▶, 2007 ▶); Burkhardt et al. (2007 ▶); Ribeiro et al. (2006 ▶); Huang et al. (2005 ▶); Dinçer et al. (2004 ▶); Berven et al. (1990 ▶); Ocak et al. (2004 ▶).

Experimental

Crystal data

C22H22N2O10 M = 474.42 Orthorhombic, a = 8.175 (2) Å b = 10.2076 (10) Å c = 29.562 (6) Å V = 2466.9 (8) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 (2) K 0.6 × 0.5 × 0.1 mm

Data collection

Bruker P4 diffractometer Absorption correction: none 5277 measured reflections 2639 independent reflections 1348 reflections with I > 2σ(I) R int = 0.056 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.112 S = 1.06 2639 reflections 307 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: XSCANS (Bruker, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXTL (Bruker, 1997 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807049860/rz2165sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807049860/rz2165Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H22N2O10Dx = 1.277 Mg m3
Mr = 474.42Melting point = 159–160 K
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 46 reflections
a = 8.175 (2) Åθ = 2.8–12.4º
b = 10.2076 (10) ŵ = 0.10 mm1
c = 29.562 (6) ÅT = 295 (2) K
V = 2466.9 (8) Å3Plate, colorless
Z = 40.6 × 0.5 × 0.1 mm
F000 = 992
Bruker P4 diffractometerRint = 0.056
Radiation source: fine-focus sealed tubeθmax = 25.5º
Monochromator: graphiteθmin = 2.1º
T = 295(2) Kh = −9→9
ω scansk = −12→12
Absorption correction: nonel = −35→35
5277 measured reflections3 standard reflections
2639 independent reflections every 97 reflections
1348 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H-atom parameters constrained
wR(F2) = 0.112  w = 1/[σ2(Fo2) + (0.001P)2 + 0.8P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2639 reflectionsΔρmax = 0.16 e Å3
307 parametersΔρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4684 (4)0.4661 (4)0.41414 (12)0.0701 (11)
O20.3965 (4)0.5287 (4)0.34103 (13)0.0670 (10)
O30.5901 (5)0.7056 (4)0.43421 (13)0.0681 (10)
O40.4002 (7)0.8623 (5)0.43616 (17)0.1139 (18)
O50.8048 (4)0.7509 (4)0.35957 (13)0.0712 (11)
O61.0210 (5)0.6471 (5)0.38745 (18)0.1015 (16)
O70.8182 (5)0.5260 (4)0.30029 (14)0.0796 (12)
O80.8314 (7)0.6754 (6)0.2448 (2)0.144 (2)
O90.4682 (5)0.5005 (4)0.24344 (15)0.0786 (12)
O100.5851 (7)0.3686 (5)0.19353 (16)0.1202 (19)
N1−0.0545 (8)−0.0194 (6)0.4681 (2)0.126 (2)
N2−0.2037 (8)0.2687 (7)0.3913 (3)0.152 (3)
C10.0363 (10)0.0603 (7)0.4593 (2)0.093 (2)
C2−0.0744 (9)0.2681 (7)0.4048 (3)0.102 (3)
C30.1489 (8)0.1642 (6)0.4468 (2)0.0793 (19)
C40.0938 (7)0.2671 (6)0.4191 (2)0.0792 (18)
C50.1966 (7)0.3700 (6)0.4070 (2)0.0753 (17)
H5A0.15930.43820.38890.090*
C60.3586 (7)0.3678 (6)0.4229 (2)0.0657 (16)
C70.4143 (8)0.2645 (6)0.4483 (2)0.0771 (18)
H7A0.52270.26310.45780.093*
C80.3113 (8)0.1623 (6)0.4598 (2)0.086 (2)
H8A0.35150.09190.47630.103*
C90.4184 (7)0.5689 (5)0.38547 (19)0.0619 (15)
H9A0.31450.60380.39680.074*
C100.5487 (6)0.6784 (5)0.38800 (19)0.0591 (15)
H10A0.50690.75800.37350.071*
C110.7051 (6)0.6337 (5)0.36433 (18)0.0585 (14)
H11A0.76210.56760.38250.070*
C120.6682 (7)0.5818 (5)0.31787 (19)0.0654 (16)
H12A0.62830.65190.29810.078*
C130.5412 (7)0.4711 (5)0.32161 (18)0.0634 (15)
H13A0.58310.40440.34250.076*
C140.5095 (9)0.8067 (6)0.4539 (2)0.0795 (19)
C150.5743 (8)0.8297 (6)0.50044 (19)0.096 (2)
H15A0.51510.90030.51430.145*
H15B0.68820.85190.49880.145*
H15C0.56110.75160.51820.145*
C160.9631 (8)0.7418 (7)0.3712 (2)0.0781 (18)
C171.0494 (8)0.8681 (6)0.3598 (2)0.112 (3)
H17A1.16290.86120.36780.168*
H17B1.00040.93890.37630.168*
H17C1.03980.88480.32790.168*
C180.8902 (9)0.5880 (9)0.2644 (3)0.102 (3)
C191.0554 (7)0.5319 (8)0.2574 (3)0.130 (3)
H19A1.10760.57550.23250.194*
H19B1.04620.44010.25090.194*
H19C1.11960.54380.28430.194*
C200.5023 (8)0.4075 (6)0.27799 (19)0.0785 (18)
H20A0.59390.35340.26880.094*
H20B0.40810.35080.28190.094*
C210.5168 (8)0.4719 (7)0.2017 (2)0.0803 (18)
C220.4807 (12)0.5694 (7)0.1681 (2)0.126 (3)
H22A0.52170.54110.13930.189*
H22B0.53180.65070.17630.189*
H22C0.36450.58170.16620.189*
U11U22U33U12U13U23
O10.061 (2)0.062 (2)0.088 (3)−0.007 (2)−0.002 (2)0.012 (2)
O20.058 (2)0.065 (2)0.078 (3)−0.006 (2)−0.002 (2)−0.002 (2)
O30.072 (3)0.069 (2)0.064 (2)0.007 (2)−0.003 (2)−0.005 (2)
O40.117 (4)0.113 (4)0.111 (4)0.050 (4)−0.010 (3)−0.029 (3)
O50.057 (2)0.065 (3)0.091 (3)−0.009 (2)−0.005 (2)0.008 (2)
O60.062 (3)0.089 (3)0.153 (4)0.006 (3)−0.017 (3)0.007 (3)
O70.069 (3)0.080 (3)0.089 (3)0.021 (3)0.002 (2)−0.007 (3)
O80.106 (4)0.159 (5)0.167 (6)0.018 (4)0.039 (4)0.058 (5)
O90.092 (3)0.071 (3)0.072 (3)0.011 (3)0.000 (3)−0.008 (2)
O100.153 (5)0.099 (4)0.108 (4)0.027 (4)0.019 (4)−0.021 (3)
N10.121 (6)0.075 (4)0.181 (7)−0.021 (4)0.017 (5)0.017 (4)
N20.077 (4)0.114 (5)0.266 (9)−0.018 (5)−0.039 (6)0.042 (6)
C10.104 (6)0.066 (4)0.109 (5)−0.010 (5)0.005 (5)0.004 (4)
C20.071 (5)0.074 (5)0.162 (7)−0.012 (4)−0.010 (5)0.016 (5)
C30.082 (5)0.056 (4)0.101 (5)−0.009 (4)0.015 (4)0.005 (4)
C40.071 (4)0.058 (4)0.109 (5)−0.004 (4)0.004 (4)0.006 (4)
C50.076 (4)0.063 (4)0.086 (4)−0.002 (4)0.003 (4)0.010 (4)
C60.067 (4)0.060 (4)0.070 (4)−0.005 (3)0.006 (3)0.003 (3)
C70.079 (4)0.066 (4)0.086 (4)0.003 (4)−0.005 (4)0.003 (4)
C80.087 (5)0.063 (4)0.107 (5)0.004 (4)−0.006 (4)0.013 (4)
C90.057 (4)0.061 (3)0.068 (4)−0.005 (3)−0.001 (3)0.004 (3)
C100.058 (4)0.052 (3)0.067 (4)0.003 (3)0.006 (3)0.005 (3)
C110.051 (3)0.054 (4)0.070 (4)0.000 (3)−0.005 (3)0.005 (3)
C120.060 (4)0.060 (4)0.076 (4)0.010 (3)−0.001 (3)0.004 (3)
C130.065 (4)0.056 (3)0.069 (4)0.007 (3)−0.005 (3)0.001 (3)
C140.076 (5)0.071 (4)0.092 (5)−0.004 (4)0.007 (4)−0.001 (4)
C150.114 (6)0.100 (5)0.075 (4)−0.009 (5)−0.009 (4)−0.007 (4)
C160.062 (4)0.089 (5)0.084 (5)−0.006 (4)0.005 (4)−0.003 (4)
C170.097 (5)0.109 (6)0.130 (6)−0.048 (5)−0.012 (5)0.001 (5)
C180.066 (5)0.126 (8)0.114 (7)0.000 (5)0.022 (5)−0.002 (6)
C190.065 (5)0.180 (8)0.144 (7)0.011 (6)0.018 (5)−0.035 (7)
C200.090 (5)0.063 (4)0.083 (4)0.002 (4)−0.013 (4)−0.002 (4)
C210.092 (5)0.072 (4)0.077 (5)−0.016 (4)0.005 (4)−0.007 (4)
C220.204 (9)0.103 (5)0.072 (4)0.014 (7)−0.009 (5)0.010 (5)
O1—C61.371 (6)C9—C101.546 (6)
O1—C91.409 (6)C9—H9A0.9800
O2—C91.388 (6)C10—C111.528 (7)
O2—C131.441 (6)C10—H10A0.9800
O3—C141.355 (7)C11—C121.503 (7)
O3—C101.434 (6)C11—H11A0.9800
O4—C141.182 (7)C12—C131.539 (7)
O5—C161.343 (7)C12—H12A0.9800
O5—C111.454 (6)C13—C201.478 (7)
O6—C161.178 (7)C13—H13A0.9800
O7—C181.369 (8)C14—C151.493 (8)
O7—C121.449 (6)C15—H15A0.9600
O8—C181.168 (9)C15—H15B0.9600
O9—C211.327 (7)C15—H15C0.9600
O9—C201.422 (6)C16—C171.509 (8)
O10—C211.218 (7)C17—H17A0.9600
N1—C11.132 (8)C17—H17B0.9600
N2—C21.130 (8)C17—H17C0.9600
C1—C31.452 (9)C18—C191.481 (9)
C2—C41.439 (9)C19—H19A0.9600
C3—C81.382 (8)C19—H19B0.9600
C3—C41.407 (8)C19—H19C0.9600
C4—C51.392 (7)C20—H20A0.9700
C5—C61.406 (8)C20—H20B0.9700
C5—H5A0.9300C21—C221.438 (8)
C6—C71.371 (7)C22—H22A0.9600
C7—C81.383 (8)C22—H22B0.9600
C7—H7A0.9300C22—H22C0.9600
C8—H8A0.9300
C6—O1—C9118.0 (4)C13—C12—H12A110.8
C9—O2—C13113.1 (4)O2—C13—C20110.5 (5)
C14—O3—C10116.2 (5)O2—C13—C12106.4 (4)
C16—O5—C11117.3 (5)C20—C13—C12113.9 (5)
C18—O7—C12117.4 (5)O2—C13—H13A108.6
C21—O9—C20117.5 (5)C20—C13—H13A108.6
N1—C1—C3178.0 (9)C12—C13—H13A108.6
N2—C2—C4176.4 (10)O4—C14—O3122.9 (7)
C8—C3—C4118.7 (6)O4—C14—C15127.0 (7)
C8—C3—C1121.9 (7)O3—C14—C15110.1 (6)
C4—C3—C1119.4 (6)C14—C15—H15A109.5
C5—C4—C3121.3 (6)C14—C15—H15B109.5
C5—C4—C2119.7 (6)H15A—C15—H15B109.5
C3—C4—C2118.9 (6)C14—C15—H15C109.5
C4—C5—C6118.1 (6)H15A—C15—H15C109.5
C4—C5—H5A121.0H15B—C15—H15C109.5
C6—C5—H5A121.0O6—C16—O5123.3 (7)
O1—C6—C7116.7 (6)O6—C16—C17127.2 (6)
O1—C6—C5122.8 (6)O5—C16—C17109.5 (6)
C7—C6—C5120.6 (6)C16—C17—H17A109.5
C6—C7—C8120.8 (6)C16—C17—H17B109.5
C6—C7—H7A119.6H17A—C17—H17B109.5
C8—C7—H7A119.6C16—C17—H17C109.5
C3—C8—C7120.4 (6)H17A—C17—H17C109.5
C3—C8—H8A119.8H17B—C17—H17C109.5
C7—C8—H8A119.8O8—C18—O7124.1 (7)
O2—C9—O1112.7 (4)O8—C18—C19127.0 (9)
O2—C9—C10110.4 (4)O7—C18—C19108.8 (8)
O1—C9—C10108.1 (4)C18—C19—H19A109.5
O2—C9—H9A108.5C18—C19—H19B109.5
O1—C9—H9A108.5H19A—C19—H19B109.5
C10—C9—H9A108.5C18—C19—H19C109.5
O3—C10—C11107.2 (4)H19A—C19—H19C109.5
O3—C10—C9110.4 (4)H19B—C19—H19C109.5
C11—C10—C9109.8 (4)O9—C20—C13112.1 (5)
O3—C10—H10A109.8O9—C20—H20A109.2
C11—C10—H10A109.8C13—C20—H20A109.2
C9—C10—H10A109.8O9—C20—H20B109.2
O5—C11—C12108.3 (4)C13—C20—H20B109.2
O5—C11—C10105.5 (4)H20A—C20—H20B107.9
C12—C11—C10110.8 (4)O10—C21—O9120.9 (7)
O5—C11—H11A110.7O10—C21—C22123.8 (7)
C12—C11—H11A110.7O9—C21—C22115.4 (7)
C10—C11—H11A110.7C21—C22—H22A109.5
O7—C12—C11107.3 (4)C21—C22—H22B109.5
O7—C12—C13107.9 (4)H22A—C22—H22B109.5
C11—C12—C13109.2 (4)C21—C22—H22C109.5
O7—C12—H12A110.8H22A—C22—H22C109.5
C11—C12—H12A110.8H22B—C22—H22C109.5
D—H···AD—HH···AD···AD—H···A
C5—H5A···O20.932.573.016 (7)110
C11—H11A···O60.982.272.675 (6)103
C12—H12A···O80.982.302.713 (8)104
C13—H13A···O10.982.402.800 (6)104
C20—H20A···O100.972.232.617 (7)102
C5—H5A···O6i0.932.413.224 (8)146
C9—H9A···O6i0.982.463.346 (7)151
C10—H10A···O10ii0.982.403.283 (7)149
C15—H15C···N1iii0.962.583.465 (9)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5A⋯O20.932.573.016 (7)110
C11—H11A⋯O60.982.272.675 (6)103
C12—H12A⋯O80.982.302.713 (8)104
C13—H13A⋯O10.982.402.800 (6)104
C20—H20A⋯O100.972.232.617 (7)102
C5—H5A⋯O6i0.932.413.224 (8)146
C9—H9A⋯O6i0.982.463.346 (7)151
C10—H10A⋯O10ii0.982.403.283 (7)149
C15—H15C⋯N1iii0.962.583.465 (9)153

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A new glycosidation method through nitrite displacement on substituted nitrobenzenes.

Authors:  Xavier Alvarez-Micó; Mario J F Calvete; Michael Hanack; Thomas Ziegler
Journal:  Carbohydr Res       Date:  2006-11-21       Impact factor: 2.104

  1 in total
  1 in total

1.  4-(Dimeth-oxy-meth-yl)phenyl 2,3,4,6-tetra-O-acetyl-β-d-glucopyran-oside.

Authors:  Caitlin F Zipp; Manuel Fernandes; Helder M Marques; Joseph P Michael
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-28
  1 in total

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