Literature DB >> 21200929

(E)-Methyl 3-(2-nitro-benzyl-idene)dithio-carbazate.

Shang Shan1, Yu-Liang Tian, Wen-Long Wang, Shan-Heng Wang.   

Abstract

The asymmetric unit of the title compound, C(9)H(9)N(3)O(2)S(2), contains two independent mol-ecules, A and B, with similar bond dimensions. In both mol-ecules, the nitro group is tilted with respect to the aromatic ring [dihedral angles 32.0 (1)° in mol-ecule A and 34.0 (1)° in mol-ecule B]. The dithio-carbazate unit is nearly coplanar with the aromatic ring in both mol-ecules. For mol-ecule B, pairs of mol-ecules are linked by N-H⋯O and C-H⋯O hydrogen bonds about a centre of symmetry to form a dimer, whereas mol-ecules A are not involved in hydrogen bonding in the crystal structure.

Entities:  

Year:  2007        PMID: 21200929      PMCID: PMC2915011          DOI: 10.1107/S160053680706059X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Okabe et al. (1993 ▶); Hu et al. (2001 ▶). For related structures, see: Chen et al. (2007 ▶); Shan & Zhang, 2006 ▶; Zhang et al. 2005 ▶). For synthesis, see: Hu et al. (2001 ▶).

Experimental

Crystal data

C9H9N3O2S2 M = 255.31 Triclinic, a = 7.5261 (12) Å b = 10.7128 (16) Å c = 14.5343 (17) Å α = 78.588 (6)° β = 87.095 (5)° γ = 84.612 (6)° V = 1143.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.45 mm−1 T = 291 (2) K 0.36 × 0.30 × 0.16 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.795, T max = 0.930 11206 measured reflections 5127 independent reflections 3773 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.116 S = 1.10 5127 reflections 291 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.31 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680706059X/ng2380sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706059X/ng2380Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N3O2S2Z = 4
Mr = 255.31F000 = 528
Triclinic, P1Dx = 1.484 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.5261 (12) ÅCell parameters from 8768 reflections
b = 10.7128 (16) Åθ = 3.5–25.2º
c = 14.5343 (17) ŵ = 0.45 mm1
α = 78.588 (6)ºT = 291 (2) K
β = 87.095 (5)ºPrism, yellow
γ = 84.612 (6)º0.36 × 0.30 × 0.16 mm
V = 1143.0 (3) Å3
Rigaku R-AXIS RAPID IP diffractometer5127 independent reflections
Radiation source: fine-focus sealed tube3773 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.024
Detector resolution: 10.00 pixels mm-1θmax = 27.4º
T = 294(2) Kθmin = 3.0º
ω scansh = −9→9
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)k = −13→13
Tmin = 0.795, Tmax = 0.930l = −18→18
11206 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.116  w = 1/[σ2(Fo2) + (0.0526P)2 + 0.2566P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.002
5127 reflectionsΔρmax = 0.32 e Å3
291 parametersΔρmin = −0.31 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.10244 (10)0.28477 (6)0.50066 (5)0.0686 (2)
S2−0.04064 (8)0.25046 (5)0.29873 (4)0.05480 (17)
S110.67348 (9)0.86939 (5)0.15976 (5)0.06155 (19)
S120.62739 (8)0.64462 (5)0.06773 (4)0.05198 (16)
N10.1634 (3)0.88846 (18)0.18824 (14)0.0555 (5)
N20.0369 (2)0.50343 (16)0.26593 (12)0.0470 (4)
N3−0.0124 (3)0.46023 (17)0.35805 (13)0.0545 (5)
H3N−0.01850.51140.39700.065*
N110.3762 (3)0.30552 (17)0.50958 (12)0.0499 (4)
N120.5421 (2)0.52269 (15)0.24812 (12)0.0420 (4)
N130.5836 (3)0.64538 (16)0.24503 (12)0.0477 (4)
H13N0.58230.67450.29610.057*
O10.1188 (3)1.00252 (16)0.16247 (14)0.0801 (6)
O20.2133 (3)0.84171 (18)0.26726 (13)0.0751 (5)
O110.4082 (3)0.23524 (18)0.58419 (12)0.0875 (7)
O120.3194 (3)0.41716 (15)0.50380 (12)0.0646 (5)
C10.1201 (3)0.67717 (18)0.14835 (14)0.0404 (4)
C20.1581 (3)0.80514 (18)0.12003 (14)0.0427 (4)
C30.1920 (3)0.8603 (2)0.02687 (15)0.0496 (5)
H30.21250.94630.01030.060*
C40.1951 (3)0.7869 (2)−0.04046 (16)0.0535 (5)
H40.21870.8226−0.10310.064*
C50.1629 (3)0.6593 (2)−0.01493 (16)0.0532 (5)
H50.16680.6091−0.06050.064*
C60.1251 (3)0.6061 (2)0.07770 (16)0.0494 (5)
H60.10250.52050.09330.059*
C70.0663 (3)0.6209 (2)0.24519 (15)0.0480 (5)
H70.05390.67080.29110.058*
C8−0.0516 (3)0.3381 (2)0.38814 (16)0.0504 (5)
C9−0.0977 (4)0.0963 (2)0.3612 (2)0.0689 (7)
H9A−0.01820.06640.41210.103*
H9B−0.08690.03690.31930.103*
H9C−0.21830.10320.38570.103*
C110.4580 (3)0.32678 (17)0.33941 (13)0.0382 (4)
C120.4033 (3)0.25252 (18)0.42419 (13)0.0390 (4)
C130.3699 (3)0.12543 (18)0.43353 (15)0.0453 (5)
H130.33410.07890.49140.054*
C140.3904 (3)0.06946 (19)0.35602 (16)0.0514 (5)
H140.3677−0.01550.36080.062*
C150.4450 (3)0.1400 (2)0.27100 (16)0.0511 (5)
H150.45850.10200.21850.061*
C160.4798 (3)0.2658 (2)0.26259 (15)0.0451 (5)
H160.51860.31090.20480.054*
C170.5029 (3)0.45918 (19)0.32906 (14)0.0454 (5)
H170.50280.49670.38160.054*
C180.6263 (3)0.72055 (18)0.16279 (14)0.0427 (5)
C190.6919 (4)0.7682 (3)−0.02735 (17)0.0663 (7)
H19A0.59850.8366−0.03680.099*
H19B0.71190.7340−0.08360.099*
H19C0.79960.8002−0.01240.099*
U11U22U33U12U13U23
S10.0862 (5)0.0596 (4)0.0520 (3)−0.0072 (3)0.0147 (3)0.0049 (3)
S20.0588 (3)0.0460 (3)0.0564 (3)−0.0097 (3)0.0041 (3)−0.0011 (2)
S110.0834 (4)0.0354 (3)0.0657 (4)−0.0174 (3)0.0141 (3)−0.0080 (3)
S120.0637 (4)0.0490 (3)0.0444 (3)−0.0098 (3)−0.0008 (3)−0.0096 (2)
N10.0720 (13)0.0434 (10)0.0562 (12)−0.0216 (9)0.0085 (10)−0.0167 (9)
N20.0487 (10)0.0401 (9)0.0482 (10)−0.0041 (8)0.0011 (8)0.0004 (7)
N30.0682 (12)0.0446 (10)0.0471 (10)−0.0055 (9)0.0062 (9)−0.0023 (8)
N110.0681 (12)0.0432 (10)0.0405 (9)−0.0102 (9)0.0001 (9)−0.0114 (8)
N120.0511 (10)0.0315 (8)0.0441 (9)−0.0073 (7)−0.0019 (8)−0.0068 (7)
N130.0674 (12)0.0347 (8)0.0425 (9)−0.0142 (8)0.0037 (8)−0.0078 (7)
O10.1226 (17)0.0372 (9)0.0830 (13)−0.0105 (10)0.0093 (12)−0.0194 (9)
O20.1115 (16)0.0655 (11)0.0557 (11)−0.0289 (11)−0.0109 (10)−0.0178 (9)
O110.164 (2)0.0608 (11)0.0367 (9)−0.0046 (12)−0.0097 (11)−0.0065 (8)
O120.0928 (13)0.0452 (9)0.0593 (10)−0.0055 (9)0.0089 (9)−0.0219 (7)
C10.0378 (10)0.0347 (9)0.0481 (11)−0.0036 (8)−0.0020 (8)−0.0063 (8)
C20.0452 (11)0.0369 (10)0.0475 (11)−0.0076 (8)0.0004 (9)−0.0105 (8)
C30.0563 (13)0.0400 (11)0.0509 (12)−0.0102 (9)0.0048 (10)−0.0038 (9)
C40.0555 (13)0.0572 (13)0.0467 (12)−0.0055 (11)0.0023 (10)−0.0085 (10)
C50.0584 (13)0.0542 (13)0.0519 (13)−0.0078 (11)−0.0006 (11)−0.0206 (10)
C60.0528 (12)0.0370 (10)0.0610 (13)−0.0088 (9)−0.0024 (10)−0.0139 (10)
C70.0537 (12)0.0409 (11)0.0491 (12)−0.0083 (9)−0.0005 (10)−0.0067 (9)
C80.0464 (11)0.0455 (11)0.0530 (12)−0.0008 (9)0.0043 (10)0.0027 (10)
C90.0703 (16)0.0472 (13)0.0838 (19)−0.0125 (12)0.0040 (14)0.0016 (12)
C110.0435 (10)0.0327 (9)0.0396 (10)−0.0055 (8)−0.0058 (8)−0.0079 (8)
C120.0455 (11)0.0346 (9)0.0385 (10)−0.0037 (8)−0.0069 (8)−0.0096 (8)
C130.0546 (12)0.0329 (10)0.0476 (11)−0.0077 (9)−0.0073 (10)−0.0026 (8)
C140.0628 (14)0.0309 (10)0.0635 (14)−0.0070 (9)−0.0164 (11)−0.0113 (9)
C150.0617 (14)0.0444 (11)0.0527 (12)0.0000 (10)−0.0101 (10)−0.0230 (10)
C160.0522 (12)0.0437 (11)0.0417 (10)−0.0062 (9)−0.0022 (9)−0.0129 (9)
C170.0615 (13)0.0379 (10)0.0398 (10)−0.0119 (9)−0.0023 (9)−0.0110 (8)
C180.0462 (11)0.0357 (10)0.0457 (11)−0.0050 (8)0.0023 (9)−0.0072 (8)
C190.0759 (17)0.0732 (17)0.0450 (12)−0.0097 (14)0.0031 (12)0.0006 (11)
S1—C81.660 (2)C3—H30.9300
S2—C81.742 (3)C4—C51.385 (3)
S2—C91.800 (2)C4—H40.9300
S11—C181.657 (2)C5—C61.381 (3)
S12—C181.736 (2)C5—H50.9300
S12—C191.797 (2)C6—H60.9300
N1—O21.221 (3)C7—H70.9300
N1—O11.225 (2)C9—H9A0.9600
N1—C21.464 (3)C9—H9B0.9600
N2—C71.272 (3)C9—H9C0.9600
N2—N31.372 (2)C11—C121.394 (3)
N3—C81.350 (3)C11—C161.396 (3)
N3—H3N0.8600C11—C171.466 (3)
N11—O111.212 (2)C12—C131.387 (3)
N11—O121.220 (2)C13—C141.373 (3)
N11—C121.461 (3)C13—H130.9300
N12—C171.273 (3)C14—C151.380 (3)
N12—N131.371 (2)C14—H140.9300
N13—C181.345 (2)C15—C161.378 (3)
N13—H13N0.8600C15—H150.9300
C1—C61.391 (3)C16—H160.9300
C1—C21.403 (3)C17—H170.9300
C1—C71.470 (3)C19—H19A0.9600
C2—C31.387 (3)C19—H19B0.9600
C3—C41.369 (3)C19—H19C0.9600
C8—S2—C9101.93 (12)N3—C8—S2113.24 (16)
C18—S12—C19101.57 (11)S1—C8—S2126.39 (13)
O2—N1—O1123.3 (2)S2—C9—H9A109.5
O2—N1—C2118.83 (19)S2—C9—H9B109.5
O1—N1—C2117.9 (2)H9A—C9—H9B109.5
C7—N2—N3115.10 (19)S2—C9—H9C109.5
C8—N3—N2120.7 (2)H9A—C9—H9C109.5
C8—N3—H3N119.7H9B—C9—H9C109.5
N2—N3—H3N119.7C12—C11—C16116.26 (17)
O11—N11—O12122.41 (19)C12—C11—C17123.88 (18)
O11—N11—C12118.20 (18)C16—C11—C17119.74 (18)
O12—N11—C12119.38 (17)C13—C12—C11123.03 (19)
C17—N12—N13115.97 (17)C13—C12—N11115.63 (18)
C18—N13—N12120.58 (17)C11—C12—N11121.34 (17)
C18—N13—H13N119.7C14—C13—C12118.95 (19)
N12—N13—H13N119.7C14—C13—H13120.5
C6—C1—C2116.07 (19)C12—C13—H13120.5
C6—C1—C7120.58 (18)C13—C14—C15119.60 (19)
C2—C1—C7123.24 (19)C13—C14—H14120.2
C3—C2—C1122.61 (19)C15—C14—H14120.2
C3—C2—N1116.12 (17)C16—C15—C14121.1 (2)
C1—C2—N1121.27 (18)C16—C15—H15119.5
C4—C3—C2119.33 (19)C14—C15—H15119.5
C4—C3—H3120.3C15—C16—C11121.1 (2)
C2—C3—H3120.3C15—C16—H16119.5
C3—C4—C5119.7 (2)C11—C16—H16119.5
C3—C4—H4120.1N12—C17—C11119.89 (18)
C5—C4—H4120.1N12—C17—H17120.1
C6—C5—C4120.4 (2)C11—C17—H17120.1
C6—C5—H5119.8N13—C18—S11120.14 (16)
C4—C5—H5119.8N13—C18—S12113.32 (14)
C5—C6—C1121.75 (19)S11—C18—S12126.54 (12)
C5—C6—H6119.1S12—C19—H19A109.5
C1—C6—H6119.1S12—C19—H19B109.5
N2—C7—C1119.6 (2)H19A—C19—H19B109.5
N2—C7—H7120.2S12—C19—H19C109.5
C1—C7—H7120.2H19A—C19—H19C109.5
N3—C8—S1120.37 (19)H19B—C19—H19C109.5
D—H···AD—HH···AD···AD—H···A
N13—H13N···O11i0.862.163.014 (3)174
C17—H17···O12i0.932.553.373 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N13—H13N⋯O11i0.862.163.014 (3)174
C17—H17⋯O12i0.932.553.373 (3)148

Symmetry code: (i) .

  1 in total

1.  SHELXL: high-resolution refinement.

Authors:  G M Sheldrick; T R Schneider
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

  1 in total
  1 in total

1.  Benzyl 3-[(E)-benzyl-idene]dithio-carbazate.

Authors:  Shang Shan; Yu-Liang Tian; Shan-Heng Wang; Wen-Long Wang; Ying-Li Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-07
  1 in total

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