Literature DB >> 21200876

3H-2,1-Benzoxaborole-1-spiro-4'-(5-oxa-3a-aza-4-borapyrene).

Beck Robin1, Gregg Buell, Paul Kiprof, Victor N Nemykin.   

Abstract

In the title compound, C(20)H(14)BNO(2), the B atom has a tetra-hedral geometry with two short B-O and two long B-C and B-N bonds, revealing a significant difference between C(ar)-O-B and C(alk-yl)-O-B bond distances. Inter-molecular Ar-H⋯O hydrogen bonds and strong π-π inter-actions (3.368 Å) between aromatic cores of neighbouring mol-ecules result in hexa-gonal channels along the crystallographic c axis, which are potentially accessible for small mol-ecules.

Entities:  

Year:  2007        PMID: 21200876      PMCID: PMC2915359          DOI: 10.1107/S1600536807066731

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the general synthesis and applications of benzoboroxoles, see: Nicolaou et al. (1998 ▶, 1999 ▶); Tan et al. (2001 ▶); Benkovic et al. (2005 ▶); Baker et al. (2006 ▶); Alexander et al. (1999 ▶). For the crystal structures of benzoboroxoles, see: Tan et al. (2001 ▶); Sporzynski et al. (2005 ▶); Coghlan et al. (2005 ▶); Arcus et al. (1993 ▶); Murafuji et al. (1999 ▶); Zhdankin et al. (1999 ▶); Yamamoto et al. (2005 ▶); Gunasekera et al. (2007 ▶). For related literature, see: Allen (2002 ▶); Prince (1982 ▶); Watkin (1994 ▶).

Experimental

Crystal data

C20H14BNO2 M = 311.13 Trigonal, a = 33.079 (5) Å c = 7.358 (5) Å V = 6973 (5) Å3 Z = 18 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.58 × 0.12 × 0.07 mm

Data collection

Rigaku AFC-7R diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.96, T max = 0.99 3564 measured reflections 3564 independent reflections 1558 reflections with I > 2.0σ(I) 3 standard reflections every 150 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.093 S = 1.07 1779 reflections 218 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.28 e Å−3 Data collection: AFC-7R Diffractometer Control Software (Rigaku/MSC, 1997 ▶); cell refinement: WinAFC (Rigaku/MSC, 2000 ▶); data reduction: TEXSAN (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807066731/em2005sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807066731/em2005Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H14BNO2Z = 18
Mr = 311.13F000 = 2916
Trigonal, R3Dx = 1.334 Mg m3
Hall symbol: -R 3Mo Kα radiation λ = 0.71073 Å
a = 33.079 (5) ÅCell parameters from 25 reflections
b = 33.079 (5) Åθ = 15–18º
c = 7.358 (5) ŵ = 0.09 mm1
α = 90ºT = 295 K
β = 90ºNeedle, yellow
γ = 120º0.58 × 0.12 × 0.07 mm
V = 6973 (5) Å3
Serial diffractometerRint = 0.000
Monochromator: graphiteθmax = 27.5º
T = 295 Kθmin = 2.9º
ω/2θ scansh = 0→42
Absorption correction: ψ scan(North et al., 1968)k = −36→36
Tmin = 0.96, Tmax = 0.99l = 0→9
3564 measured reflections3 standard reflections
3564 independent reflections every 150 reflections
1558 reflections with I > 2.0σ(I) intensity decay: 0.00%
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.068  Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 6.52 6.79 1.78
wR(F2) = 0.093(Δ/σ)max = 0.0003
S = 1.07Δρmax = 0.31 e Å3
1779 reflectionsΔρmin = −0.28 e Å3
218 parametersExtinction correction: Larson (1970), Equation 22
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 269 (15)
xyzUiso*/Ueq
B10.60386 (17)0.50314 (19)0.3431 (8)0.0461
N10.54645 (12)0.47492 (12)0.3338 (5)0.0441
O10.61889 (10)0.50681 (11)0.1583 (4)0.0556
O20.61678 (10)0.54880 (11)0.4258 (5)0.0557
C10.62617 (15)0.47612 (16)0.4450 (7)0.0470
C20.62919 (18)0.46446 (19)0.6229 (7)0.0641
C30.65528 (19)0.4431 (2)0.6641 (8)0.0738
C40.67847 (17)0.43392 (18)0.5313 (8)0.0612
C50.67633 (15)0.44539 (16)0.3534 (7)0.0536
C60.64948 (15)0.46632 (15)0.3118 (7)0.0453
C70.64298 (16)0.48142 (17)0.1297 (7)0.0549
C80.52178 (17)0.42836 (16)0.3387 (7)0.0556
C90.47493 (17)0.40339 (17)0.2966 (7)0.0615
C100.45304 (16)0.42688 (17)0.2430 (7)0.0568
C110.47733 (16)0.47560 (17)0.2342 (7)0.0465
C120.52458 (15)0.49909 (15)0.2852 (6)0.0420
C130.45737 (18)0.5029 (2)0.1721 (7)0.0611
C140.48327 (19)0.5502 (2)0.1649 (7)0.0603
C150.53031 (18)0.57485 (17)0.2257 (7)0.0524
C160.55138 (15)0.54933 (15)0.2865 (6)0.0441
C170.5559 (2)0.62379 (19)0.2316 (8)0.0699
C180.5997 (2)0.64575 (19)0.3060 (9)0.0767
C190.62077 (18)0.62144 (17)0.3711 (8)0.0655
C200.59680 (16)0.57271 (16)0.3584 (7)0.0492
H110.61350.47060.71390.0862*
H120.65690.43520.78410.1024*
H130.69550.41940.56140.0794*
H140.69220.43960.26240.0612*
H150.53720.41250.37180.0623*
H160.45860.37100.30450.0698*
H170.42150.41070.21280.0625*
H710.67320.50150.07120.0750*
H720.62420.45410.05280.0750*
H1310.42630.48790.13520.0773*
H1410.46980.56690.11930.0818*
H1710.54300.64120.18770.0923*
H1810.61620.67820.31000.0853*
H1910.65010.63700.42490.0712*
U11U22U33U12U13U23
B10.033 (3)0.048 (3)0.056 (4)0.020 (3)0.000 (3)0.000 (3)
N10.033 (2)0.039 (2)0.060 (3)0.0174 (18)0.0013 (19)−0.0006 (19)
O10.049 (2)0.060 (2)0.063 (2)0.0316 (19)0.0060 (18)0.0093 (18)
O20.0365 (18)0.046 (2)0.083 (3)0.0192 (16)−0.0066 (17)−0.0093 (18)
C10.034 (3)0.048 (3)0.057 (3)0.019 (2)−0.002 (2)−0.007 (2)
C20.060 (3)0.086 (4)0.061 (4)0.048 (3)0.000 (3)0.000 (3)
C30.077 (4)0.105 (5)0.063 (4)0.062 (4)−0.002 (3)0.007 (3)
C40.053 (3)0.072 (4)0.071 (4)0.041 (3)−0.006 (3)−0.002 (3)
C50.039 (3)0.054 (3)0.068 (4)0.024 (3)0.004 (3)−0.002 (3)
C60.035 (3)0.042 (3)0.054 (3)0.016 (2)0.002 (2)−0.004 (2)
C70.050 (3)0.056 (3)0.063 (4)0.030 (3)0.009 (3)−0.001 (3)
C80.048 (3)0.038 (3)0.080 (4)0.022 (2)0.006 (3)0.003 (3)
C90.047 (3)0.041 (3)0.084 (4)0.012 (3)0.004 (3)−0.007 (3)
C100.034 (3)0.055 (3)0.069 (4)0.013 (3)−0.003 (3)−0.010 (3)
C110.039 (3)0.051 (3)0.051 (3)0.024 (2)0.001 (2)−0.006 (2)
C120.036 (3)0.044 (3)0.048 (3)0.021 (2)0.001 (2)−0.004 (2)
C130.045 (3)0.081 (4)0.067 (4)0.039 (3)−0.005 (3)−0.005 (3)
C140.068 (4)0.072 (4)0.063 (4)0.052 (3)0.007 (3)0.007 (3)
C150.056 (3)0.056 (3)0.055 (3)0.036 (3)0.010 (3)0.005 (3)
C160.040 (3)0.040 (3)0.055 (3)0.021 (2)0.006 (2)−0.002 (2)
C170.079 (4)0.054 (4)0.093 (5)0.045 (3)0.023 (4)0.015 (3)
C180.081 (4)0.041 (3)0.110 (5)0.032 (3)0.031 (4)0.010 (3)
C190.048 (3)0.043 (3)0.092 (5)0.013 (3)0.014 (3)−0.009 (3)
C200.043 (3)0.040 (3)0.065 (3)0.022 (2)0.007 (2)−0.004 (2)
O2—C201.354 (5)C3—H120.930
B1—O21.479 (6)C4—C51.374 (7)
C20—C161.405 (6)C4—H130.930
C20—C191.399 (6)C5—H140.930
C16—C121.440 (6)C8—C91.378 (6)
C16—C151.410 (6)C8—H150.930
C12—N11.367 (5)C9—C101.359 (6)
C12—C111.405 (6)C9—H160.930
B1—N11.646 (6)C10—C111.397 (6)
N1—C81.335 (5)C10—H170.930
B1—O11.432 (6)C11—C131.434 (6)
B1—C11.602 (7)C13—C141.358 (7)
O1—C71.433 (5)C13—H1310.930
C7—C61.482 (6)C14—C151.420 (7)
C7—H710.980C14—H1410.930
C7—H720.980C15—C171.403 (7)
C6—C11.382 (6)C17—C181.368 (7)
C6—C51.406 (6)C17—H1710.930
C1—C21.382 (6)C18—C191.387 (7)
C2—C31.396 (7)C18—H1810.930
C2—H110.930C19—H1910.930
C3—C41.366 (7)
C20—O2—B1118.0 (4)C4—C3—H12120.0
O2—C20—C16121.1 (4)C3—C4—C5120.5 (5)
O2—C20—C19119.2 (5)C3—C4—H13119.7
C16—C20—C19119.6 (5)C5—C4—H13119.8
C20—C16—C12120.6 (4)C6—C5—C4118.4 (5)
C20—C16—C15120.2 (4)C6—C5—H14120.5
C12—C16—C15119.1 (4)C4—C5—H14121.1
C16—C12—N1118.2 (4)N1—C8—C9122.8 (5)
C16—C12—C11120.8 (4)N1—C8—H15117.9
N1—C12—C11120.9 (4)C9—C8—H15119.3
C12—N1—B1118.5 (4)C8—C9—C10118.9 (5)
C12—N1—C8119.0 (4)C8—C9—H16120.6
B1—N1—C8121.3 (4)C10—C9—H16120.5
N1—B1—O2105.0 (4)C9—C10—C11120.6 (4)
N1—B1—O1105.2 (4)C9—C10—H17120.3
O2—B1—O1113.1 (4)C11—C10—H17119.0
N1—B1—C1115.2 (4)C12—C11—C10117.7 (4)
O2—B1—C1113.5 (4)C12—C11—C13118.2 (5)
O1—B1—C1104.7 (4)C10—C11—C13124.1 (5)
B1—O1—C7111.2 (4)C11—C13—C14120.9 (5)
O1—C7—C6106.4 (4)C11—C13—H131119.4
O1—C7—H71110.0C14—C13—H131119.7
C6—C7—H71110.8C13—C14—C15121.9 (5)
O1—C7—H72110.0C13—C14—H141119.0
C6—C7—H72110.1C15—C14—H141119.1
H71—C7—H72109.5C14—C15—C16118.9 (5)
C7—C6—C1111.7 (4)C14—C15—C17121.9 (5)
C7—C6—C5126.6 (4)C16—C15—C17119.1 (5)
C1—C6—C5121.6 (5)C15—C17—C18119.6 (5)
B1—C1—C6105.4 (4)C15—C17—H171120.2
B1—C1—C2135.8 (5)C18—C17—H171120.2
C6—C1—C2118.7 (4)C17—C18—C19122.4 (5)
C1—C2—C3119.8 (5)C17—C18—H181118.6
C1—C2—H11119.6C19—C18—H181119.0
C3—C2—H11120.6C20—C19—C18119.0 (5)
C2—C3—C4121.0 (5)C20—C19—H191120.0
C2—C3—H12119.0C18—C19—H191120.9
D—H···AD—HH···AD···AD—H···A
C9—H16···O2i0.932.593.490 (8)163
Table 1

Selected bond lengths (Å)

B1—O21.479 (6)
B1—N11.646 (6)
B1—O11.432 (6)
B1—C11.602 (7)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H16⋯O2i0.932.593.490 (8)163

Symmetry code: (i) .

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