Literature DB >> 21200740

2-Benzoyl-pyridine semicarbazone.

Daniel F de Lima, Anayive Pérez-Rebolledo, Javier Ellena, Heloisa Beraldo.   

Abstract

The title compound, C(13)H(12)N(4)O, crystallizes with two independent mol-ecules in the asymmetric unit. The compound crystallizes as the ZE isomer, where Z and E refer to the configuration around the C=n class="Chemical">N and N-C bonds, respectively, with an N-H⋯N(py) (py is pyridine) intra-molecular hydrogen bond. The dihedral angles between the least-squares planes through the semicarbazone group and the pyridyl ring are 22.70 (9) and 27.26 (9)° for the two mol-ecules. There are intermolecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2007        PMID: 21200740      PMCID: PMC2915240          DOI: 10.1107/S1600536807064628

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Beraldo & Gambino (2004 ▶); Beraldo et al. (2002 ▶); Teixeira et al. (2003 ▶); Farrell (2002 ▶); Pérez-Rebolledo et al. (2006 ▶).

Experimental

Crystal data

C13H12N4O M = 240.27 Monoclinic, a = 22.9281 (7) Å b = 9.1868 (2) Å c = 23.1869 (7) Å β = 93.049 (1)° V = 4877.1 (2) Å3 Z = 16 Mo Kα radiation μ = 0.09 mm−1 T = 294 K 0.18 × 0.14 × 0.04 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 16551 measured reflections 4588 independent reflections 3011 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.150 S = 1.07 4588 reflections 325 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.22 e Å−3 Data collection: COLLECT (Enraf–Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DEn class="Chemical">NZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807064628/ww2110sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807064628/ww2110Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12N4OF000 = 2016
Mr = 240.27Dx = 1.309 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 23344 reflections
a = 22.9281 (7) Åθ = 2.9–25.7º
b = 9.1868 (2) ŵ = 0.09 mm1
c = 23.1869 (7) ÅT = 294 K
β = 93.049 (1)ºPrism, colourless
V = 4877.1 (2) Å30.18 × 0.14 × 0.04 mm
Z = 16
KappaCCD diffractometerRint = 0.066
T = 294 Kθmax = 25.7º
φ scans and ω scans with κ offsetsθmin = 3.5º
Absorption correction: noneh = −27→27
16551 measured reflectionsk = −10→11
4588 independent reflectionsl = −28→28
3011 reflections with I > 2σ(I)
Refinement on F2H-atom parameters constrained
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.0842P)2] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.047(Δ/σ)max < 0.001
wR(F2) = 0.150Δρmax = 0.27 e Å3
S = 1.07Δρmin = −0.22 e Å3
4588 reflectionsExtinction correction: none
325 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.32552 (5)0.15282 (12)0.00628 (6)0.0579 (4)
N110.30310 (7)0.38523 (15)0.02708 (7)0.0638 (5)
H11A0.26680.37350.01680.077*
H11B0.31540.46850.03960.077*
N120.39721 (7)0.30226 (14)0.03898 (7)0.0560 (4)
H120.42340.23730.03380.067*
N130.41230 (6)0.43452 (15)0.06270 (6)0.0518 (4)
N140.50663 (7)0.22107 (17)0.07080 (8)0.0646 (5)
C110.33995 (8)0.27542 (18)0.02374 (8)0.0472 (4)
C120.46602 (8)0.46234 (18)0.07889 (7)0.0503 (4)
C130.47417 (8)0.60980 (18)0.10515 (8)0.0507 (5)
C140.43912 (9)0.7256 (2)0.08574 (9)0.0615 (5)
H140.41200.71170.05500.074*
C150.44422 (10)0.8602 (2)0.11153 (11)0.0717 (6)
H150.42100.93690.09770.086*
C160.48359 (10)0.8818 (2)0.15773 (11)0.0752 (6)
H160.48640.97230.17560.090*
C170.51862 (10)0.7691 (2)0.17715 (10)0.0728 (6)
H170.54580.78400.20780.087*
C180.51390 (9)0.6347 (2)0.15160 (9)0.0612 (5)
H180.53760.55900.16550.073*
C190.51699 (8)0.36475 (18)0.07344 (8)0.0526 (5)
C1100.57304 (9)0.4197 (2)0.07022 (8)0.0625 (5)
H1100.57950.51960.07090.075*
C1110.61896 (9)0.3247 (3)0.06597 (10)0.0745 (6)
H1110.65680.36010.06420.089*
C1120.60892 (10)0.1782 (3)0.06428 (10)0.0746 (6)
H1120.63950.11240.06200.090*
C1130.55268 (10)0.1312 (2)0.06610 (10)0.0732 (6)
H1130.54560.03160.06400.088*
O20.24288 (6)0.15322 (12)0.42544 (5)0.0583 (4)
N210.21621 (7)0.38036 (15)0.44999 (7)0.0600 (4)
H21A0.22520.36600.48600.072*
H21B0.20250.46320.43860.072*
N220.20957 (7)0.30602 (15)0.35554 (6)0.0568 (4)
H220.21610.24350.32910.068*
N230.18510 (7)0.43784 (15)0.34154 (6)0.0529 (4)
N240.17683 (8)0.22916 (17)0.24561 (7)0.0621 (4)
C210.22340 (8)0.27519 (17)0.41217 (7)0.0468 (4)
C220.17017 (8)0.46887 (18)0.28832 (7)0.0507 (4)
C230.14314 (8)0.61504 (18)0.28004 (8)0.0517 (5)
C240.16044 (9)0.7306 (2)0.31577 (9)0.0618 (5)
H240.19010.71730.34420.074*
C250.13392 (11)0.8647 (2)0.30944 (9)0.0726 (6)
H250.14580.94120.33360.087*
C260.09007 (11)0.8860 (2)0.26773 (10)0.0758 (7)
H260.07220.97650.26370.091*
C270.07268 (10)0.7732 (2)0.23192 (10)0.0720 (6)
H270.04300.78760.20350.086*
C280.09885 (9)0.6396 (2)0.23788 (9)0.0620 (5)
H280.08680.56410.21330.074*
C290.17786 (8)0.37337 (19)0.23733 (8)0.0532 (5)
C2100.18628 (9)0.4333 (2)0.18346 (8)0.0666 (6)
H2100.18900.53360.17900.080*
C2110.19057 (11)0.3423 (3)0.13692 (10)0.0781 (6)
H2110.19530.38080.10040.094*
C2120.18792 (10)0.1954 (3)0.14452 (10)0.0742 (6)
H2120.19010.13240.11330.089*
C2130.18198 (10)0.1423 (2)0.19957 (10)0.0717 (6)
H2130.18150.04200.20500.086*
U11U22U33U12U13U23
O10.0576 (8)0.0475 (7)0.0680 (9)−0.0063 (6)−0.0032 (6)−0.0060 (6)
N110.0486 (10)0.0495 (9)0.0915 (13)0.0005 (7)−0.0132 (9)−0.0110 (8)
N120.0465 (10)0.0483 (9)0.0721 (11)0.0010 (6)−0.0058 (8)−0.0077 (7)
N130.0498 (10)0.0488 (8)0.0559 (10)−0.0047 (6)−0.0052 (7)0.0005 (6)
N140.0537 (11)0.0583 (10)0.0818 (13)0.0034 (8)0.0039 (9)0.0122 (8)
C110.0461 (11)0.0498 (10)0.0451 (10)−0.0030 (8)−0.0023 (8)−0.0002 (8)
C120.0466 (11)0.0546 (11)0.0489 (11)−0.0046 (8)−0.0059 (8)0.0086 (8)
C130.0464 (11)0.0526 (10)0.0524 (11)−0.0071 (8)−0.0034 (8)0.0037 (8)
C140.0532 (12)0.0604 (12)0.0695 (14)−0.0044 (9)−0.0093 (10)−0.0010 (9)
C150.0604 (14)0.0597 (12)0.0945 (18)0.0003 (9)0.0013 (12)−0.0048 (11)
C160.0682 (16)0.0723 (14)0.0859 (17)−0.0156 (11)0.0104 (12)−0.0246 (12)
C170.0649 (15)0.0865 (15)0.0660 (14)−0.0142 (12)−0.0055 (11)−0.0133 (11)
C180.0572 (13)0.0693 (13)0.0558 (12)−0.0072 (9)−0.0076 (10)−0.0003 (9)
C190.0492 (12)0.0595 (11)0.0486 (11)−0.0013 (8)−0.0026 (8)0.0096 (8)
C1100.0531 (13)0.0725 (12)0.0616 (13)−0.0041 (10)0.0008 (9)0.0043 (10)
C1110.0470 (13)0.0974 (17)0.0794 (16)0.0036 (11)0.0073 (11)0.0075 (12)
C1120.0556 (14)0.0909 (17)0.0780 (16)0.0163 (11)0.0093 (11)0.0196 (12)
C1130.0645 (15)0.0662 (13)0.0893 (17)0.0127 (10)0.0092 (12)0.0157 (11)
O20.0712 (10)0.0462 (7)0.0562 (8)0.0068 (6)−0.0069 (7)0.0044 (6)
N210.0811 (12)0.0497 (9)0.0476 (9)0.0128 (7)−0.0106 (8)0.0001 (7)
N220.0737 (11)0.0499 (9)0.0458 (9)0.0109 (7)−0.0049 (8)0.0016 (6)
N230.0589 (10)0.0485 (9)0.0504 (9)0.0032 (7)−0.0049 (7)0.0065 (7)
N240.0722 (12)0.0599 (10)0.0539 (10)−0.0070 (8)0.0013 (8)−0.0043 (7)
C210.0481 (11)0.0459 (10)0.0456 (11)−0.0006 (8)−0.0034 (8)0.0045 (8)
C220.0531 (11)0.0530 (10)0.0454 (11)−0.0011 (8)−0.0022 (8)0.0062 (8)
C230.0523 (12)0.0555 (11)0.0469 (11)0.0013 (8)−0.0012 (9)0.0085 (8)
C240.0688 (14)0.0627 (12)0.0528 (12)0.0030 (10)−0.0063 (10)0.0011 (9)
C250.0964 (18)0.0580 (13)0.0632 (14)0.0093 (11)0.0034 (12)−0.0002 (9)
C260.0908 (18)0.0693 (14)0.0678 (15)0.0263 (12)0.0102 (12)0.0162 (11)
C270.0681 (15)0.0846 (15)0.0623 (14)0.0175 (11)−0.0046 (11)0.0153 (11)
C280.0623 (13)0.0638 (12)0.0587 (13)0.0021 (9)−0.0074 (10)0.0078 (9)
C290.0502 (12)0.0589 (12)0.0500 (11)−0.0016 (8)−0.0030 (8)0.0028 (8)
C2100.0732 (15)0.0745 (13)0.0524 (13)0.0056 (10)0.0058 (10)0.0077 (10)
C2110.0852 (18)0.0993 (18)0.0504 (13)0.0141 (13)0.0088 (11)0.0019 (11)
C2120.0694 (15)0.0977 (18)0.0557 (14)0.0032 (12)0.0037 (11)−0.0171 (11)
C2130.0772 (16)0.0686 (13)0.0690 (15)−0.0080 (10)0.0019 (12)−0.0112 (11)
O1—C111.2360 (19)O2—C211.2390 (19)
N11—C111.321 (2)N21—C211.321 (2)
N11—H11A0.8600N21—H21A0.8600
N11—H11B0.8600N21—H21B0.8600
N12—C111.364 (2)N22—C211.364 (2)
N12—N131.3705 (19)N22—N231.3665 (18)
N12—H120.8600N22—H220.8600
N13—C121.294 (2)N23—C221.295 (2)
N14—C191.342 (2)N24—C291.339 (2)
N14—C1131.349 (3)N24—C2131.343 (3)
C12—C191.484 (2)C22—C231.487 (2)
C12—C131.493 (2)C22—C291.490 (2)
C13—C181.392 (2)C23—C281.390 (2)
C13—C141.393 (3)C23—C241.392 (3)
C14—C151.376 (3)C24—C251.378 (3)
C14—H140.9300C24—H240.9300
C15—C161.378 (3)C25—C261.371 (3)
C15—H150.9300C25—H250.9300
C16—C171.371 (3)C26—C271.374 (3)
C16—H160.9300C26—H260.9300
C17—C181.371 (3)C27—C281.370 (3)
C17—H170.9300C27—H270.9300
C18—H180.9300C28—H280.9300
C19—C1101.386 (3)C29—C2101.388 (3)
C110—C1111.375 (3)C210—C2111.372 (3)
C110—H1100.9300C210—H2100.9300
C111—C1121.366 (3)C211—C2121.363 (3)
C111—H1110.9300C211—H2110.9300
C112—C1131.362 (3)C212—C2131.380 (3)
C112—H1120.9300C212—H2120.9300
C113—H1130.9300C213—H2130.9300
C11—N11—H11A120.0C21—N21—H21A120.0
C11—N11—H11B120.0C21—N21—H21B120.0
H11A—N11—H11B120.0H21A—N21—H21B120.0
C11—N12—N13118.90 (14)C21—N22—N23118.96 (14)
C11—N12—H12120.6C21—N22—H22120.5
N13—N12—H12120.6N23—N22—H22120.5
C12—N13—N12120.51 (15)C22—N23—N22120.40 (14)
C19—N14—C113117.91 (17)C29—N24—C213118.09 (17)
O1—C11—N11123.66 (17)O2—C21—N21123.56 (16)
O1—C11—N12119.14 (15)O2—C21—N22119.28 (15)
N11—C11—N12117.18 (15)N21—C21—N22117.14 (14)
N13—C12—C19126.72 (16)N23—C22—C23114.15 (15)
N13—C12—C13113.21 (15)N23—C22—C29126.16 (15)
C19—C12—C13120.07 (15)C23—C22—C29119.68 (15)
C18—C13—C14117.82 (16)C28—C23—C24117.99 (16)
C18—C13—C12121.83 (16)C28—C23—C22121.42 (16)
C14—C13—C12120.23 (16)C24—C23—C22120.56 (16)
C15—C14—C13120.76 (19)C25—C24—C23120.56 (19)
C15—C14—H14119.6C25—C24—H24119.7
C13—C14—H14119.6C23—C24—H24119.7
C14—C15—C16120.3 (2)C26—C25—C24120.4 (2)
C14—C15—H15119.8C26—C25—H25119.8
C16—C15—H15119.8C24—C25—H25119.8
C17—C16—C15119.63 (19)C25—C26—C27119.81 (19)
C17—C16—H16120.2C25—C26—H26120.1
C15—C16—H16120.2C27—C26—H26120.1
C16—C17—C18120.4 (2)C28—C27—C26120.2 (2)
C16—C17—H17119.8C28—C27—H27119.9
C18—C17—H17119.8C26—C27—H27119.9
C17—C18—C13121.05 (19)C27—C28—C23121.07 (19)
C17—C18—H18119.5C27—C28—H28119.5
C13—C18—H18119.5C23—C28—H28119.5
N14—C19—C110121.19 (17)N24—C29—C210121.71 (17)
N14—C19—C12117.39 (16)N24—C29—C22117.71 (16)
C110—C19—C12121.42 (16)C210—C29—C22120.57 (17)
C111—C110—C19119.2 (2)C211—C210—C29119.1 (2)
C111—C110—H110120.4C211—C210—H210120.5
C19—C110—H110120.4C29—C210—H210120.5
C112—C111—C110119.9 (2)C212—C211—C210119.7 (2)
C112—C111—H111120.0C212—C211—H211120.1
C110—C111—H111120.0C210—C211—H211120.1
C113—C112—C111118.0 (2)C211—C212—C213118.48 (19)
C113—C112—H112121.0C211—C212—H212120.8
C111—C112—H112121.0C213—C212—H212120.8
N14—C113—C112123.7 (2)N24—C213—C212122.8 (2)
N14—C113—H113118.1N24—C213—H213118.6
C112—C113—H113118.1C212—C213—H213118.6
C11—N12—N13—C12178.38 (16)C21—N22—N23—C22−178.29 (16)
N13—N12—C11—O1−174.77 (15)N23—N22—C21—O2176.43 (15)
N13—N12—C11—N117.2 (2)N23—N22—C21—N21−5.0 (2)
N12—N13—C12—C191.8 (3)N22—N23—C22—C23178.90 (15)
N12—N13—C12—C13−178.45 (15)N22—N23—C22—C29−1.2 (3)
N13—C12—C13—C18142.89 (18)N23—C22—C23—C28−145.14 (19)
C19—C12—C13—C18−37.3 (3)C29—C22—C23—C2834.9 (3)
N13—C12—C13—C14−33.1 (2)N23—C22—C23—C2432.8 (3)
C19—C12—C13—C14146.70 (18)C29—C22—C23—C24−147.07 (18)
C18—C13—C14—C150.6 (3)C28—C23—C24—C250.4 (3)
C12—C13—C14—C15176.71 (19)C22—C23—C24—C25−177.65 (18)
C13—C14—C15—C16−1.1 (3)C23—C24—C25—C260.0 (3)
C14—C15—C16—C171.4 (3)C24—C25—C26—C27−0.3 (3)
C15—C16—C17—C18−1.2 (3)C25—C26—C27—C280.2 (3)
C16—C17—C18—C130.8 (3)C26—C27—C28—C230.2 (3)
C14—C13—C18—C17−0.4 (3)C24—C23—C28—C27−0.5 (3)
C12—C13—C18—C17−176.51 (18)C22—C23—C28—C27177.56 (19)
C113—N14—C19—C1101.3 (3)C213—N24—C29—C210−2.5 (3)
C113—N14—C19—C12−179.70 (17)C213—N24—C29—C22178.06 (18)
N13—C12—C19—N14−24.8 (3)N23—C22—C29—N2429.3 (3)
C13—C12—C19—N14155.40 (16)C23—C22—C29—N24−150.77 (17)
N13—C12—C19—C110154.13 (19)N23—C22—C29—C210−150.11 (19)
C13—C12—C19—C110−25.6 (3)C23—C22—C29—C21029.8 (3)
N14—C19—C110—C111−1.9 (3)N24—C29—C210—C2113.5 (3)
C12—C19—C110—C111179.14 (18)C22—C29—C210—C211−177.08 (19)
C19—C110—C111—C1120.8 (3)C29—C210—C211—C212−1.6 (3)
C110—C111—C112—C1130.9 (3)C210—C211—C212—C213−1.2 (3)
C19—N14—C113—C1120.4 (3)C29—N24—C213—C212−0.4 (3)
C111—C112—C113—N14−1.6 (3)C211—C212—C213—N242.2 (3)
D—H···AD—HH···AD···AD—H···A
N11—H11A···O1i0.862.173.029 (2)178
N11—H11B···O2ii0.862.332.917 (2)126
N21—H21B···O1ii0.862.272.883 (2)128
N21—H21A···O2iii0.862.153.005 (2)173
N12—H12···N140.862.062.683 (2)129
N22—H22···N240.862.102.712 (2)128
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N11—H11A⋯O1i0.862.173.029 (2)178
N11—H11B⋯O2ii0.862.332.917 (2)126
N21—H21B⋯O1ii0.862.272.883 (2)128
N21—H21A⋯O2iii0.862.153.005 (2)173
N12—H12⋯N140.862.062.683 (2)129
N22—H22⋯N240.862.102.712 (2)128

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

Review 1.  The wide pharmacological versatility of semicarbazones, thiosemicarba-zones and their metal complexes.

Authors:  Heloisa Beraldo; Dinorah Gambino
Journal:  Mini Rev Med Chem       Date:  2004-01       Impact factor: 3.862

2.  An effective anticonvulsant prepared following a host-guest strategy that uses hydroxypropyl-beta-cyclodextrin and benzaldehyde semicarbazone.

Authors:  Heloisa Beraldo; Rubén D Sinisterra; Letícia R Teixeira; Rafael P Vieira; Maria Carolina Doretto
Journal:  Biochem Biophys Res Commun       Date:  2002-08-16       Impact factor: 3.575

  2 in total
  2 in total

1.  (Cyanato-κN){1-[(E)-phen-yl(pyridin-2-yl-κN)methyl-idene]semicarbazidato-κ(2)N(1),O}copper(II).

Authors:  Roji J Kunnath; M R Prathapachandra Kurup; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23

2.  catena-Poly[[[{1-[(E)-phenyl(pyridin-2-yl-κN)methylidene]semicarbazidato-κ(2)N(1),O}copper(II)]-μ-dicyanamido-κ(2)N(1):N(5)] monohydrate].

Authors:  Roji J Kunnath; M R Prathapachandra Kurup; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-15
  2 in total

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