Literature DB >> 21200733

1,3,5-Tris(6-chloro-pyrazin-2-yl-oxy)benzene.

Yan Li1, Jian-Wu Wang.   

Abstract

In the title compound, C(18)H(9)Cl(3)N(6)O(3), all bond lengths and angles are normal. The dihedral angles between the benzene ring and the three pyrazine rings are 72.67 (2), 60.73 (3) and 77.74 (2)°. The crystal packing is stabilized by van der Waals forces and by a weak π-π stacking inter-action between pyrazine rings, with a centroid-centroid distance of 3.487 (2) Å.

Entities:  

Year:  2007        PMID: 21200733      PMCID: PMC2915235          DOI: 10.1107/S160053680706360X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literatures see: Carter & Boer (1974 ▶); Seitz et al. (2002 ▶); Temple et al. (1970 ▶).

Experimental

Crystal data

C18H9Cl3N6O3 M = 463.66 Triclinic, a = 9.680 (2) Å b = 10.658 (2) Å c = 11.039 (3) Å α = 72.768 (3)° β = 68.308 (3)° γ = 69.342 (3)° V = 972.0 (4) Å3 Z = 2 Mo Kα radiation μ = 0.51 mm−1 T = 298 (2) K 0.58 × 0.31 × 0.30 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.758, T max = 0.863 4925 measured reflections 3375 independent reflections 2797 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.108 S = 1.04 3375 reflections 271 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.39 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2001 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680706360X/fj2085sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680706360X/fj2085Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H9Cl3N6O3Z = 2
Mr = 463.66F000 = 468
Triclinic, P1Dx = 1.584 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 9.680 (2) ÅCell parameters from 1699 reflections
b = 10.658 (2) Åθ = 2.8–23.1º
c = 11.039 (3) ŵ = 0.51 mm1
α = 72.768 (3)ºT = 298 (2) K
β = 68.308 (3)ºPrism, colorless
γ = 69.342 (3)º0.58 × 0.31 × 0.30 mm
V = 972.0 (4) Å3
Bruker SMART CCD area-detector diffractometer3375 independent reflections
Radiation source: fine-focus sealed tube2797 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.017
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 2004)h = −9→11
Tmin = 0.758, Tmax = 0.863k = −12→12
4925 measured reflectionsl = −13→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.108  w = 1/[σ2(Fo2) + (0.0537P)2 + 0.2339P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3375 reflectionsΔρmax = 0.22 e Å3
271 parametersΔρmin = −0.39 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.04661 (7)0.67966 (7)0.44208 (6)0.0642 (2)
Cl20.43548 (9)1.27994 (7)−0.59901 (7)0.0772 (2)
Cl30.32169 (10)1.47146 (8)0.07383 (9)0.0893 (3)
O10.43622 (16)0.85408 (15)0.05573 (15)0.0530 (4)
O20.1867 (2)0.93858 (16)−0.27062 (15)0.0616 (4)
O3−0.01216 (16)1.23869 (14)0.03280 (16)0.0513 (4)
N1−0.1102 (3)1.4653 (2)0.2505 (2)0.0743 (6)
N20.4938 (2)0.6220 (2)0.3517 (2)0.0701 (6)
N30.2331 (3)1.0283 (2)−0.6181 (2)0.0672 (6)
N40.1437 (2)1.34503 (17)0.05891 (17)0.0469 (4)
N50.3057 (2)1.09657 (17)−0.42807 (17)0.0459 (4)
N60.25692 (18)0.76867 (16)0.23874 (16)0.0409 (4)
C10.0239 (4)1.4929 (3)0.2147 (3)0.0718 (8)
H1B0.03381.55410.25390.086*
C20.3070 (3)1.1226 (3)−0.6499 (2)0.0600 (6)
H2B0.33581.1674−0.73770.072*
C3−0.1181 (3)1.3782 (3)0.1916 (2)0.0610 (6)
H3B−0.21041.35600.21470.073*
C40.5191 (3)0.7021 (3)0.2337 (2)0.0626 (7)
H4B0.61880.70940.18670.075*
C50.1484 (3)1.4320 (2)0.1203 (2)0.0542 (6)
C60.1940 (3)0.9688 (3)−0.4911 (2)0.0602 (6)
H6B0.14150.9025−0.46430.072*
C70.3414 (2)1.1549 (2)−0.5553 (2)0.0488 (5)
C80.2308 (3)1.0047 (2)−0.3975 (2)0.0470 (5)
C90.3493 (3)0.6156 (2)0.4159 (2)0.0540 (6)
H9A0.32640.56140.50000.065*
C100.2025 (3)0.9832 (2)−0.1693 (2)0.0467 (5)
C110.3125 (2)0.8988 (2)−0.1081 (2)0.0467 (5)
H11A0.38120.8202−0.13860.056*
C120.2348 (2)0.68880 (19)0.3581 (2)0.0407 (5)
C130.3169 (2)0.9348 (2)−0.0002 (2)0.0421 (5)
C140.0097 (2)1.3191 (2)0.0952 (2)0.0440 (5)
C150.1076 (2)1.12977 (19)−0.0168 (2)0.0403 (5)
C160.2156 (2)1.0492 (2)0.0488 (2)0.0409 (4)
H16A0.21961.07130.12260.049*
C170.0996 (2)1.0992 (2)−0.1265 (2)0.0444 (5)
H17A0.02681.1553−0.16990.053*
C180.3995 (2)0.77556 (19)0.1787 (2)0.0419 (5)
U11U22U33U12U13U23
Cl10.0539 (3)0.0787 (4)0.0503 (4)−0.0223 (3)−0.0150 (3)0.0057 (3)
Cl20.1024 (5)0.0756 (4)0.0561 (4)−0.0460 (4)−0.0100 (4)−0.0072 (3)
Cl30.0920 (5)0.0802 (5)0.1186 (7)−0.0405 (4)−0.0433 (5)−0.0155 (4)
O10.0408 (8)0.0582 (9)0.0452 (9)−0.0084 (7)−0.0133 (7)0.0055 (7)
O20.0966 (13)0.0628 (10)0.0390 (9)−0.0401 (9)−0.0227 (8)−0.0036 (7)
O30.0463 (8)0.0467 (8)0.0619 (10)−0.0073 (6)−0.0212 (7)−0.0118 (7)
N10.0842 (17)0.0791 (15)0.0478 (13)−0.0113 (13)−0.0091 (11)−0.0225 (11)
N20.0501 (12)0.0856 (15)0.0539 (13)−0.0002 (10)−0.0244 (10)0.0053 (11)
N30.0846 (15)0.0855 (15)0.0436 (12)−0.0288 (12)−0.0243 (11)−0.0158 (11)
N40.0521 (10)0.0416 (9)0.0439 (10)−0.0120 (8)−0.0150 (8)−0.0040 (8)
N50.0531 (10)0.0477 (10)0.0367 (10)−0.0103 (8)−0.0156 (8)−0.0090 (8)
N60.0451 (10)0.0397 (9)0.0361 (9)−0.0061 (7)−0.0174 (8)−0.0044 (7)
C10.105 (2)0.0596 (15)0.0553 (16)−0.0137 (15)−0.0331 (16)−0.0168 (13)
C20.0684 (15)0.0727 (16)0.0363 (12)−0.0164 (13)−0.0167 (11)−0.0086 (11)
C30.0580 (14)0.0666 (15)0.0427 (13)−0.0117 (12)−0.0069 (11)−0.0049 (12)
C40.0421 (12)0.0782 (16)0.0521 (15)−0.0057 (11)−0.0173 (11)0.0003 (12)
C50.0693 (15)0.0441 (12)0.0515 (14)−0.0153 (11)−0.0271 (12)−0.0008 (10)
C60.0758 (16)0.0650 (14)0.0508 (15)−0.0256 (13)−0.0228 (12)−0.0137 (12)
C70.0502 (12)0.0509 (12)0.0394 (12)−0.0091 (10)−0.0103 (9)−0.0097 (10)
C80.0562 (12)0.0474 (12)0.0385 (12)−0.0122 (10)−0.0172 (10)−0.0080 (9)
C90.0569 (14)0.0536 (12)0.0395 (12)−0.0016 (10)−0.0201 (10)−0.0010 (10)
C100.0627 (13)0.0500 (12)0.0312 (11)−0.0271 (10)−0.0145 (10)0.0016 (9)
C110.0499 (12)0.0434 (11)0.0393 (12)−0.0156 (9)−0.0046 (9)−0.0049 (9)
C120.0454 (11)0.0378 (10)0.0363 (11)−0.0049 (8)−0.0156 (9)−0.0067 (8)
C130.0395 (10)0.0442 (11)0.0357 (11)−0.0132 (8)−0.0114 (9)0.0045 (9)
C140.0487 (12)0.0385 (10)0.0361 (11)−0.0070 (9)−0.0142 (9)0.0012 (8)
C150.0423 (11)0.0369 (10)0.0390 (11)−0.0141 (8)−0.0114 (9)−0.0004 (8)
C160.0450 (11)0.0460 (11)0.0325 (10)−0.0157 (9)−0.0140 (9)−0.0017 (8)
C170.0537 (12)0.0446 (11)0.0379 (11)−0.0208 (10)−0.0214 (10)0.0070 (9)
C180.0429 (11)0.0400 (10)0.0395 (11)−0.0049 (8)−0.0158 (9)−0.0060 (9)
Cl1—C121.735 (2)C1—C51.371 (4)
Cl2—C71.728 (2)C1—H1B0.9300
Cl3—C51.729 (3)C2—C71.367 (3)
O1—C181.360 (2)C2—H2B0.9300
O1—C131.402 (2)C3—C141.390 (3)
O2—C81.351 (3)C3—H3B0.9300
O2—C101.411 (3)C4—C181.386 (3)
O3—C141.357 (3)C4—H4B0.9300
O3—C151.396 (2)C6—C81.394 (3)
N1—C31.317 (3)C6—H6B0.9300
N1—C11.323 (4)C9—C121.364 (3)
N2—C41.319 (3)C9—H9A0.9300
N2—C91.330 (3)C10—C171.369 (3)
N3—C21.326 (3)C10—C111.377 (3)
N3—C61.326 (3)C11—C131.374 (3)
N4—C141.312 (3)C11—H11A0.9300
N4—C51.320 (3)C13—C161.377 (3)
N5—C81.312 (3)C15—C171.379 (3)
N5—C71.325 (3)C15—C161.382 (3)
N6—C181.310 (3)C16—H16A0.9300
N6—C121.328 (2)C17—H17A0.9300
C18—O1—C13118.64 (15)O2—C8—C6116.6 (2)
C8—O2—C10118.93 (16)N2—C9—C12119.8 (2)
C14—O3—C15121.38 (16)N2—C9—H9A120.1
C3—N1—C1117.2 (2)C12—C9—H9A120.1
C4—N2—C9117.46 (19)C17—C10—C11122.6 (2)
C2—N3—C6116.8 (2)C17—C10—O2119.58 (19)
C14—N4—C5115.09 (19)C11—C10—O2117.48 (19)
C8—N5—C7114.59 (18)C13—C11—C10117.54 (19)
C18—N6—C12114.85 (16)C13—C11—H11A121.2
N1—C1—C5120.6 (2)C10—C11—H11A121.2
N1—C1—H1B119.7N6—C12—C9124.2 (2)
C5—C1—H1B119.7N6—C12—Cl1116.16 (14)
N3—C2—C7120.9 (2)C9—C12—Cl1119.64 (17)
N3—C2—H2B119.6C11—C13—C16122.78 (18)
C7—C2—H2B119.6C11—C13—O1117.27 (18)
N1—C3—C14120.9 (2)C16—C13—O1119.85 (19)
N1—C3—H3B119.6N4—C14—O3120.43 (19)
C14—C3—H3B119.6N4—C14—C3122.7 (2)
N2—C4—C18121.0 (2)O3—C14—C3116.8 (2)
N2—C4—H4B119.5C17—C15—C16122.55 (19)
C18—C4—H4B119.5C17—C15—O3115.06 (17)
N4—C5—C1123.6 (2)C16—C15—O3121.97 (19)
N4—C5—Cl3116.79 (18)C13—C16—C15116.97 (19)
C1—C5—Cl3119.6 (2)C13—C16—H16A121.5
N3—C6—C8120.7 (2)C15—C16—H16A121.5
N3—C6—H6B119.6C10—C17—C15117.57 (19)
C8—C6—H6B119.6C10—C17—H17A121.2
N5—C7—C2124.0 (2)C15—C17—H17A121.2
N5—C7—Cl2116.06 (17)N6—C18—O1120.19 (17)
C2—C7—Cl2119.97 (18)N6—C18—C4122.7 (2)
N5—C8—O2120.29 (18)O1—C18—C4117.13 (19)
N5—C8—C6123.1 (2)
C3—N1—C1—C5−0.2 (4)N2—C9—C12—Cl1179.78 (19)
C6—N3—C2—C70.5 (4)C10—C11—C13—C161.0 (3)
C1—N1—C3—C14−0.4 (4)C10—C11—C13—O1−175.44 (17)
C9—N2—C4—C18−0.6 (4)C18—O1—C13—C11−111.4 (2)
C14—N4—C5—C1−0.4 (3)C18—O1—C13—C1672.1 (2)
C14—N4—C5—Cl3−178.98 (14)C5—N4—C14—O3175.50 (17)
N1—C1—C5—N40.7 (4)C5—N4—C14—C3−0.2 (3)
N1—C1—C5—Cl3179.2 (2)C15—O3—C14—N433.3 (3)
C2—N3—C6—C8−0.4 (4)C15—O3—C14—C3−150.69 (19)
C8—N5—C7—C2−1.0 (3)N1—C3—C14—N40.7 (3)
C8—N5—C7—Cl2178.31 (15)N1—C3—C14—O3−175.2 (2)
N3—C2—C7—N50.2 (4)C14—O3—C15—C17−150.15 (18)
N3—C2—C7—Cl2−179.10 (19)C14—O3—C15—C1637.0 (3)
C7—N5—C8—O2−179.47 (19)C11—C13—C16—C15−0.8 (3)
C7—N5—C8—C61.1 (3)O1—C13—C16—C15175.49 (16)
C10—O2—C8—N58.9 (3)C17—C15—C16—C13−0.1 (3)
C10—O2—C8—C6−171.7 (2)O3—C15—C16—C13172.23 (17)
N3—C6—C8—N5−0.5 (4)C11—C10—C17—C15−0.6 (3)
N3—C6—C8—O2−179.9 (2)O2—C10—C17—C15172.20 (17)
C4—N2—C9—C121.0 (4)C16—C15—C17—C100.8 (3)
C8—O2—C10—C1776.1 (3)O3—C15—C17—C10−172.01 (17)
C8—O2—C10—C11−110.8 (2)C12—N6—C18—O1179.91 (17)
C17—C10—C11—C13−0.2 (3)C12—N6—C18—C41.8 (3)
O2—C10—C11—C13−173.20 (17)C13—O1—C18—N64.8 (3)
C18—N6—C12—C9−1.4 (3)C13—O1—C18—C4−177.0 (2)
C18—N6—C12—Cl1178.83 (14)N2—C4—C18—N6−0.9 (4)
N2—C9—C12—N60.0 (3)N2—C4—C18—O1−179.0 (2)
  2 in total

1.  Synthesis of potential antimalarial agents. VI. Preparation of 3-(p-chlorophenyl)-8-(4-(diethylamino)-1-methylbutyl()amino) pyrido(2,3-b)pyrazine.

Authors:  C Temple; J D Rose; J A Montgomery
Journal:  J Med Chem       Date:  1970-11       Impact factor: 7.446

2.  Synthesis and antimycobacterial activity of pyrazine and quinoxaline derivatives.

Authors:  Lainne E Seitz; William J Suling; Robert C Reynolds
Journal:  J Med Chem       Date:  2002-12-05       Impact factor: 7.446

  2 in total

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