Literature DB >> 21200679

N-[(E)-4-Pyridylmethyl-ene]-4-[(E)-4-(4-pyridylmethyl-eneamino)benz-yl]aniline tetra-hydrate.

Sheng-Li Hu1, Yi-Tao Li, Li-Ping Cao.   

Abstract

The title compound, C(25)H(20)N(4)·4H(2)O, crystallizes with the organic mol-ecule lying on a twofold n class="Disease">rotation axis through the methyl-ene bridge C atom; there are also two water molecules in the asymmetric unit. The crystal structure is stabilized by C-H⋯O, O-H⋯O and O-H⋯N hydrogen bonds, linking the water mol-ecules to each other and to the pyridine N atom.

Entities:  

Year:  2007        PMID: 21200679      PMCID: PMC2915186          DOI: 10.1107/S1600536807063179

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Jursic et al. (2002 ▶); Coucouvanis et al. (1993 ▶); Hodnett & Mooney (1970 ▶); Li et al. (2005 ▶); Yam & Pui (2002 ▶).

Experimental

Crystal data

C25H20N4·4H2O M = 448.51 Monoclinic, a = 17.7743 (14) Å b = 4.7309 (4) Å c = 28.478 (2) Å β = 99.69 (1)° V = 2360.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 294 (2) K 0.40 × 0.30 × 0.30 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 7552 measured reflections 2302 independent reflections 1850 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.158 S = 1.08 2302 reflections 162 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Sheldrick, 2000 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063179/sf2014sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063179/sf2014Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H20N4·4H2O1F000 = 952
Mr = 448.51Dx = 1.262 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2/cCell parameters from 2376 reflections
a = 17.7743 (14) Åθ = 2.3–27.4º
b = 4.7309 (4) ŵ = 0.09 mm1
c = 28.478 (2) ÅT = 294 (2) K
β = 99.69 (1)ºBlock, yellow
V = 2360.5 (3) Å30.40 × 0.30 × 0.30 mm
Z = 4
Bruker SMART CCD area-detector diffractometer1850 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.022
Monochromator: graphiteθmax = 26.0º
T = 294(2) Kθmin = 2.3º
phi and ω scansh = −13→21
Absorption correction: nonek = −5→5
7552 measured reflectionsl = −35→35
2302 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.058H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.158  w = 1/[σ2(Fo2) + (0.0751P)2 + 1.2009P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2302 reflectionsΔρmax = 0.20 e Å3
162 parametersΔρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.50000.9902 (5)0.25000.0468 (6)
H1A0.46951.11040.22660.056*0.50
H1B0.53051.11040.27340.056*0.50
C20.44833 (9)0.8053 (3)0.27406 (6)0.0400 (4)
C30.47436 (10)0.6805 (4)0.31775 (6)0.0493 (5)
H30.52310.72340.33360.059*
C40.42989 (11)0.4944 (4)0.33839 (7)0.0504 (5)
H40.44870.41480.36790.060*
C50.35682 (10)0.4251 (4)0.31521 (6)0.0419 (4)
C60.32993 (10)0.5543 (4)0.27215 (6)0.0456 (4)
H60.28080.51410.25650.055*
C70.37470 (10)0.7423 (4)0.25190 (6)0.0449 (4)
H70.35510.82760.22300.054*
C80.32973 (11)0.0807 (4)0.36783 (7)0.0511 (5)
H80.38110.08870.38140.061*
C90.27972 (11)−0.1144 (4)0.38837 (6)0.0492 (5)
C100.30718 (14)−0.2665 (5)0.42886 (8)0.0658 (6)
H100.3578−0.24670.44350.079*
C110.25914 (16)−0.4484 (5)0.44754 (9)0.0739 (7)
H110.2788−0.54900.47490.089*
C120.16076 (14)−0.3398 (6)0.38962 (10)0.0770 (7)
H120.1098−0.36330.37590.092*
C130.20413 (12)−0.1544 (5)0.36816 (8)0.0642 (6)
H130.1830−0.05790.34060.077*
N10.30633 (9)0.2361 (3)0.33305 (5)0.0481 (4)
N20.18689 (13)−0.4874 (4)0.42866 (8)0.0748 (6)
O10.49404 (13)0.2296 (5)0.45062 (7)0.0944 (7)
H1C0.472 (2)0.249 (8)0.4769 (14)0.142*
H1D0.521 (2)0.065 (9)0.4559 (14)0.142*
O20.42372 (14)0.2747 (5)0.53161 (9)0.1114 (8)
H2A0.442 (3)0.440 (11)0.5419 (15)0.167*
H2B0.386 (3)0.219 (10)0.5448 (16)0.167*
U11U22U33U12U13U23
C10.0515 (15)0.0357 (13)0.0585 (15)0.0000.0250 (12)0.000
C20.0424 (9)0.0319 (8)0.0501 (10)0.0024 (7)0.0206 (7)−0.0036 (7)
C30.0425 (10)0.0537 (11)0.0523 (10)−0.0080 (8)0.0102 (8)−0.0007 (8)
C40.0506 (11)0.0545 (11)0.0463 (10)−0.0080 (9)0.0091 (8)0.0062 (8)
C50.0434 (10)0.0382 (9)0.0481 (10)−0.0037 (7)0.0190 (7)−0.0058 (7)
C60.0384 (9)0.0460 (10)0.0528 (10)−0.0032 (8)0.0089 (7)−0.0003 (8)
C70.0458 (10)0.0424 (10)0.0487 (10)0.0049 (8)0.0140 (8)0.0042 (7)
C80.0493 (11)0.0475 (10)0.0589 (11)−0.0087 (8)0.0159 (9)−0.0010 (9)
C90.0597 (12)0.0397 (10)0.0530 (11)−0.0085 (8)0.0237 (9)−0.0064 (8)
C100.0730 (14)0.0611 (13)0.0651 (13)−0.0125 (11)0.0167 (11)0.0066 (10)
C110.0983 (19)0.0629 (14)0.0663 (14)−0.0161 (13)0.0303 (13)0.0112 (11)
C120.0674 (14)0.0750 (16)0.0933 (18)−0.0255 (12)0.0271 (13)0.0000 (14)
C130.0630 (13)0.0626 (13)0.0695 (14)−0.0158 (11)0.0179 (10)0.0047 (10)
N10.0490 (9)0.0456 (9)0.0527 (9)−0.0083 (7)0.0173 (7)0.0003 (7)
N20.0899 (15)0.0609 (12)0.0839 (14)−0.0222 (11)0.0440 (12)−0.0001 (10)
O10.1031 (15)0.1013 (15)0.0787 (12)−0.0129 (12)0.0153 (10)0.0224 (11)
O20.1177 (18)0.0957 (16)0.1373 (19)−0.0295 (13)0.0691 (15)0.0062 (13)
C1—C2i1.513 (2)C8—C91.469 (3)
C1—C21.513 (2)C8—H80.9300
C1—H1A0.9700C9—C101.377 (3)
C1—H1B0.9700C9—C131.383 (3)
C2—C31.385 (3)C10—C111.380 (3)
C2—C71.386 (3)C10—H100.9300
C3—C41.379 (2)C11—N21.319 (3)
C3—H30.9300C11—H110.9300
C4—C51.393 (3)C12—N21.329 (3)
C4—H40.9300C12—C131.377 (3)
C5—C61.382 (2)C12—H120.9300
C5—N11.420 (2)C13—H130.9300
C6—C71.382 (2)O1—H1C0.91 (4)
C6—H60.9300O1—H1D0.91 (4)
C7—H70.9300O2—H2A0.88 (5)
C8—N11.247 (2)O2—H2B0.87 (5)
C2i—C1—C2109.37 (19)C2—C7—H7119.5
C2i—C1—H1A109.8N1—C8—C9122.89 (18)
C2—C1—H1A109.8N1—C8—H8118.6
C2i—C1—H1B109.8C9—C8—H8118.6
C2—C1—H1B109.8C10—C9—C13117.36 (18)
H1A—C1—H1B108.2C10—C9—C8120.58 (19)
C3—C2—C7117.66 (16)C13—C9—C8122.06 (18)
C3—C2—C1121.12 (14)C9—C10—C11119.6 (2)
C7—C2—C1121.11 (14)C9—C10—H10120.2
C4—C3—C2121.77 (17)C11—C10—H10120.2
C4—C3—H3119.1N2—C11—C10123.6 (2)
C2—C3—H3119.1N2—C11—H11118.2
C3—C4—C5120.24 (17)C10—C11—H11118.2
C3—C4—H4119.9N2—C12—C13124.3 (2)
C5—C4—H4119.9N2—C12—H12117.9
C6—C5—C4118.18 (16)C13—C12—H12117.9
C6—C5—N1116.81 (15)C12—C13—C9118.7 (2)
C4—C5—N1124.99 (16)C12—C13—H13120.7
C5—C6—C7121.16 (16)C9—C13—H13120.7
C5—C6—H6119.4C8—N1—C5120.59 (16)
C7—C6—H6119.4C11—N2—C12116.53 (19)
C6—C7—C2120.95 (16)H1C—O1—H1D104 (3)
C6—C7—H7119.5H2A—O2—H2B113 (4)
C2i—C1—C2—C379.47 (15)N1—C8—C9—C135.0 (3)
C2i—C1—C2—C7−96.86 (15)C13—C9—C10—C11−0.3 (3)
C7—C2—C3—C41.5 (3)C8—C9—C10—C11179.97 (19)
C1—C2—C3—C4−174.93 (16)C9—C10—C11—N20.1 (4)
C2—C3—C4—C50.5 (3)N2—C12—C13—C9−0.7 (4)
C3—C4—C5—C6−2.0 (3)C10—C9—C13—C120.6 (3)
C3—C4—C5—N1179.84 (16)C8—C9—C13—C12−179.7 (2)
C4—C5—C6—C71.5 (3)C9—C8—N1—C5178.70 (15)
N1—C5—C6—C7179.84 (15)C6—C5—N1—C8169.49 (17)
C5—C6—C7—C20.5 (3)C4—C5—N1—C8−12.3 (3)
C3—C2—C7—C6−2.0 (2)C10—C11—N2—C12−0.1 (4)
C1—C2—C7—C6174.46 (16)C13—C12—N2—C110.5 (4)
N1—C8—C9—C10−175.31 (19)
D—H···AD—HH···AD···AD—H···A
C4—H4···O10.932.523.443 (3)175
O1—H1C···O20.91 (4)1.90 (4)2.810 (3)178 (4)
O2—H2B···N2ii0.87 (5)1.94 (5)2.782 (3)163 (4)
O2—H2A···O1iii0.88 (5)1.93 (5)2.765 (3)160 (4)
O1—H1D···O2iv0.91 (4)1.88 (4)2.799 (3)178 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O10.932.523.443 (3)175
O1—H1C⋯O20.91 (4)1.90 (4)2.810 (3)178 (4)
O2—H2B⋯N2i0.87 (5)1.94 (5)2.782 (3)163 (4)
O2—H2A⋯O1ii0.88 (5)1.93 (5)2.765 (3)160 (4)
O1—H1D⋯O2iii0.91 (4)1.88 (4)2.799 (3)178 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  Antitumor activities of some Schiff bases.

Authors:  E M Hodnett; P D Mooney
Journal:  J Med Chem       Date:  1970-07       Impact factor: 7.446

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Authors:  Mansoor Movahedi; Hassan Hadadzadeh; Karla Fejfarova; Michal Dusek; Aliakbar Dehno Khalaji
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