Literature DB >> 21195707

A regulatory 'landscape effect' over the HoxD cluster.

Patrick Tschopp1, Denis Duboule.   

Abstract

Faithful expression of Hox genes in both time and space is essential for proper patterning of the primary body axis. Transgenic approaches in vertebrates have suggested that this collinear activation process is regulated in a largely gene cluster-autonomous manner. In contrast, more recently co-opted expression specificities, required in other embryonic structures, depend upon long-range enhancer sequences acting from outside the gene clusters. This regulatory dichotomy was recently questioned, since gene activation along the trunk seems to be partially regulated by signals located outside of the cluster. We investigated these alternative regulatory strategies by engineering a large inversion that precisely separates the murine HoxD complex from its centromeric neighborhood. Mutant animals displayed posterior transformations along with subtle deregulations of Hoxd genes, indicating an impact of the centromeric landscape on the fine-tuning of Hoxd gene expression. Proximal limbs were also affected, suggesting that this 'landscape effect' is generic and impacts upon regulatory mechanisms of various qualities and evolutionary origins.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21195707     DOI: 10.1016/j.ydbio.2010.12.034

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  28 in total

1.  Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states.

Authors:  Pierre J Fabre; Alexander Benke; Elisabeth Joye; Thi Hanh Nguyen Huynh; Suliana Manley; Denis Duboule
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

2.  Reshuffling genomic landscapes to study the regulatory evolution of Hox gene clusters.

Authors:  Patrick Tschopp; Nadine Fraudeau; Frédérique Béna; Denis Duboule
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

Review 3.  A fluorescence spotlight on the clockwork development and metabolism of bone.

Authors:  Tadahiro Iimura; Ayako Nakane; Mayu Sugiyama; Hiroki Sato; Yuji Makino; Takashi Watanabe; Yuzo Takagi; Rika Numano; Akira Yamaguchi
Journal:  J Bone Miner Metab       Date:  2011-07-16       Impact factor: 2.626

4.  Overexpression of HOX genes is prevalent in Ewing sarcoma and is associated with altered epigenetic regulation of developmental transcription programs.

Authors:  Laurie K Svoboda; Ashley Harris; Natashay J Bailey; Raphaela Schwentner; Eleni Tomazou; Cornelia von Levetzow; Brian Magnuson; Mats Ljungman; Heinrich Kovar; Elizabeth R Lawlor
Journal:  Epigenetics       Date:  2014-12       Impact factor: 4.528

5.  Epigenome-wide DNA methylation landscape of melanoma progression to brain metastasis reveals aberrations on homeobox D cluster associated with prognosis.

Authors:  Diego M Marzese; Richard A Scolyer; Jamie L Huynh; Sharon K Huang; Hajime Hirose; Kelly K Chong; Eiji Kiyohara; Jinhua Wang; Neal P Kawas; Nicholas C Donovan; Keisuke Hata; James S Wilmott; Rajmohan Murali; Michael E Buckland; Brindha Shivalingam; John F Thompson; Donald L Morton; Daniel F Kelly; Dave S B Hoon
Journal:  Hum Mol Genet       Date:  2013-09-06       Impact factor: 6.150

6.  "Self-regulation," a new facet of Hox genes' function.

Authors:  Rushikesh Sheth; Maria Félix Bastida; Marie Kmita; Marian Ros
Journal:  Dev Dyn       Date:  2013-09-02       Impact factor: 3.780

7.  Transgene- and locus-dependent imprinting reveals allele-specific chromosome conformations.

Authors:  Nicolas Lonfat; Thomas Montavon; David Jebb; Patrick Tschopp; Thi Hanh Nguyen Huynh; Jozsef Zakany; Denis Duboule
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-01       Impact factor: 11.205

8.  Impact of copy number variations (CNVs) on long-range gene regulation at the HoxD locus.

Authors:  Thomas Montavon; Laurie Thevenet; Denis Duboule
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-07       Impact factor: 11.205

Review 9.  The origins, scaling and loss of tetrapod digits.

Authors:  Aditya Saxena; Matthew Towers; Kimberly L Cooper
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-02-05       Impact factor: 6.237

10.  Anterior-posterior differences in HoxD chromatin topology in limb development.

Authors:  Iain Williamson; Ragnhild Eskeland; Laura A Lettice; Alison E Hill; Shelagh Boyle; Graeme R Grimes; Robert E Hill; Wendy A Bickmore
Journal:  Development       Date:  2012-09       Impact factor: 6.868

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