Literature DB >> 21189285

Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis.

Francis S Wolenski1, Michael R Garbati, Tristan J Lubinski, Nikki Traylor-Knowles, Erica Dresselhaus, Derek J Stefanik, Haley Goucher, John R Finnerty, Thomas D Gilmore.   

Abstract

The sea anemone Nematostella vectensis is the leading developmental and genomic model for the phylum Cnidaria, which includes anemones, hydras, jellyfish, and corals. In insects and vertebrates, the NF-κB pathway is required for cellular and organismal responses to various stresses, including pathogens and chemicals, as well as for several developmental processes. Herein, we have characterized proteins that comprise the core NF-κB pathway in Nematostella, including homologs of NF-κB, IκB, Bcl-3, and IκB kinase (IKK). We show that N. vectensis NF-κB (Nv-NF-κB) can bind to κB sites and activate transcription of reporter genes containing multimeric κB sites or the Nv-IκB promoter. Both Nv-IκB and Nv-Bcl-3 interact with Nv-NF-κB and block its ability to activate reporter gene expression. Nv-IKK is most similar to human IKKε/TBK kinases and, in vitro, can phosphorylate Ser47 of Nv-IκB. Nv-NF-κB is expressed in a subset of ectodermal cells in juvenile and adult Nematostella anemones. A bioinformatic analysis suggests that homologs of many mammalian NF-κB target genes are targets for Nv-NF-κB, including genes involved in apoptosis and responses to organic compounds and endogenous stimuli. These results indicate that NF-κB pathway proteins in Nematostella are similar to their vertebrate homologs, and these results also provide a framework for understanding the evolutionary origins of NF-κB signaling.

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Year:  2010        PMID: 21189285      PMCID: PMC3067825          DOI: 10.1128/MCB.00927-10

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  38 in total

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Authors:  Kevin J Peterson; Nicholas J Butterfield
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-27       Impact factor: 11.205

2.  Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis.

Authors:  James C Sullivan; Demetrios Kalaitzidis; Thomas D Gilmore; John R Finnerty
Journal:  Dev Genes Evol       Date:  2006-11-21       Impact factor: 0.900

3.  Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.

Authors:  Nicholas H Putnam; Mansi Srivastava; Uffe Hellsten; Bill Dirks; Jarrod Chapman; Asaf Salamov; Astrid Terry; Harris Shapiro; Erika Lindquist; Vladimir V Kapitonov; Jerzy Jurka; Grigory Genikhovich; Igor V Grigoriev; Susan M Lucas; Robert E Steele; John R Finnerty; Ulrich Technau; Mark Q Martindale; Daniel S Rokhsar
Journal:  Science       Date:  2007-07-06       Impact factor: 47.728

Review 4.  Shared principles in NF-kappaB signaling.

Authors:  Matthew S Hayden; Sankar Ghosh
Journal:  Cell       Date:  2008-02-08       Impact factor: 41.582

5.  Helicase89B is a Mot1p/BTAF1 homologue that mediates an antimicrobial response in Drosophila.

Authors:  Yoshimasa Yagi; Y Tony Ip
Journal:  EMBO Rep       Date:  2005-09-30       Impact factor: 8.807

Review 6.  Nuclear factor-kappa B pathways in Drosophila.

Authors:  S Minakhina; R Steward
Journal:  Oncogene       Date:  2006-10-30       Impact factor: 9.867

7.  The transcription factor NF-kappaB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain.

Authors:  Marie Gauthier; Bernard M Degnan
Journal:  Dev Genes Evol       Date:  2008-01-04       Impact factor: 0.900

8.  The innate immune repertoire in cnidaria--ancestral complexity and stochastic gene loss.

Authors:  David J Miller; Georg Hemmrich; Eldon E Ball; David C Hayward; Konstantin Khalturin; Noriko Funayama; Kiyokazu Agata; Thomas C G Bosch
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

9.  JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.

Authors:  Jan Christian Bryne; Eivind Valen; Man-Hung Eric Tang; Troels Marstrand; Ole Winther; Isabelle da Piedade; Anders Krogh; Boris Lenhard; Albin Sandelin
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Review 10.  Manipulation of the nuclear factor-kappaB pathway and the innate immune response by viruses.

Authors:  J Hiscott; T-L A Nguyen; M Arguello; P Nakhaei; S Paz
Journal:  Oncogene       Date:  2006-10-30       Impact factor: 9.867

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  19 in total

1.  Two polymorphic residues account for the differences in DNA binding and transcriptional activation by NF-κB proteins encoded by naturally occurring alleles in Nematostella vectensis.

Authors:  Francis S Wolenski; Sushil Chandani; Derek J Stefanik; Ning Jiang; Emma Chu; John R Finnerty; Thomas D Gilmore
Journal:  J Mol Evol       Date:  2011-12-25       Impact factor: 2.395

2.  A report from the second Nematostella vectensis research conference.

Authors:  Thomas D Gilmore; Ann M Tarrant; John R Finnerty
Journal:  Dev Genes Evol       Date:  2013-01-12       Impact factor: 0.900

3.  Isolation of DNA, RNA and protein from the starlet sea anemone Nematostella vectensis.

Authors:  Derek J Stefanik; Francis S Wolenski; Lauren E Friedman; Thomas D Gilmore; John R Finnerty
Journal:  Nat Protoc       Date:  2013-04-11       Impact factor: 13.491

4.  KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome.

Authors:  Walter C Dunlap; Antonio Starcevic; Damir Baranasic; Janko Diminic; Jurica Zucko; Ranko Gacesa; Madeleine Jh van Oppen; Daslav Hranueli; John Cullum; Paul F Long
Journal:  BMC Genomics       Date:  2013-07-26       Impact factor: 3.969

5.  A profile of an endosymbiont-enriched fraction of the coral Stylophora pistillata reveals proteins relevant to microbial-host interactions.

Authors:  Andrew J Weston; Walter C Dunlap; J Malcolm Shick; Anke Klueter; Katrina Iglic; Ana Vukelic; Antonio Starcevic; Malcolm Ward; Mark L Wells; Charles G Trick; Paul F Long
Journal:  Mol Cell Proteomics       Date:  2012-02-20       Impact factor: 5.911

6.  Aryl hydrocarbon receptor (AHR) in the cnidarian Nematostella vectensis: comparative expression, protein interactions, and ligand binding.

Authors:  Adam M Reitzel; Yale J Passamaneck; Sibel I Karchner; Diana G Franks; Mark Q Martindale; Ann M Tarrant; Mark E Hahn
Journal:  Dev Genes Evol       Date:  2013-11-29       Impact factor: 0.900

Review 7.  Looking Down on NF-κB.

Authors:  Leah M Williams; Thomas D Gilmore
Journal:  Mol Cell Biol       Date:  2020-07-14       Impact factor: 4.272

8.  Sea anemone model has a single Toll-like receptor that can function in pathogen detection, NF-κB signal transduction, and development.

Authors:  Joseph J Brennan; Jonathan L Messerschmidt; Leah M Williams; Bryan J Matthews; Marinaliz Reynoso; Thomas D Gilmore
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-06       Impact factor: 11.205

9.  Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis.

Authors:  Francis S Wolenski; Michael J Layden; Mark Q Martindale; Thomas D Gilmore; John R Finnerty
Journal:  Nat Protoc       Date:  2013-04-11       Impact factor: 13.491

10.  Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.

Authors:  Philip J Kranzusch; Stephen C Wilson; Amy S Y Lee; James M Berger; Jennifer A Doudna; Russell E Vance
Journal:  Mol Cell       Date:  2015-08-20       Impact factor: 17.970

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