Literature DB >> 21185804

Deuteration of Escherichia coli enzyme I(Ntr) alters its stability.

Grzegorz Piszczek1, Jennifer C Lee, Nico Tjandra, Chang-Ro Lee, Yeong-Jae Seok, Rodney L Levine, Alan Peterkofsky.   

Abstract

Enzyme I(Ntr) is the first protein in the nitrogen phosphotransferase pathway. Using an array of biochemical and biophysical tools, we characterized the protein, compared its properties to that of EI of the carbohydrate PTS and, in addition, examined the effect of substitution of all nonexchangeable protons by deuterium (perdeuteration) on the properties of EI(Ntr). Notably, we find that the catalytic function (autophosphorylation and phosphotransfer to NPr) remains unperturbed while its stability is modulated by deuteration. In particular, the deuterated form exhibits a reduction of approximately 4°C in thermal stability, enhanced oligomerization propensity, as well as increased sensitivity to proteolysis in vitro. We investigated tertiary, secondary, and local structural changes, both in the absence and presence of PEP, using near- and far-UV circular dichroism and Trp fluorescence spectroscopy. Our data demonstrate that the aromatic residues are particularly sensitive probes for detecting effects of deuteration with an enhanced quantum yield upon PEP binding and apparent decreases in tertiary contacts for Tyr and Trp side chains. Trp mutagenesis studies showed that the region around Trp522 responds to binding of both PEP and NPr. The significance of these results in the context of structural analysis of EI(Ntr) are evaluated. Published by Elsevier Inc.

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Year:  2010        PMID: 21185804      PMCID: PMC3058872          DOI: 10.1016/j.abb.2010.12.022

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  38 in total

Review 1.  Parallel PTS systems.

Authors:  Alan Peterkofsky; Guangshun Wang; Yeong-Jae Seok
Journal:  Arch Biochem Biophys       Date:  2006-09-01       Impact factor: 4.013

2.  Escherichia coli enzyme IIANtr regulates the K+ transporter TrkA.

Authors:  Chang-Ro Lee; Seung-Hyon Cho; Mi-Jeong Yoon; Alan Peterkofsky; Yeong-Jae Seok
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-08       Impact factor: 11.205

3.  An investigation into structural changes due to deuteration.

Authors:  S J Fisher; J R Helliwell
Journal:  Acta Crystallogr A       Date:  2008-04-18       Impact factor: 2.290

4.  Solution structure of NPr, a bacterial signal-transducing protein that controls the phosphorylation state of the potassium transporter-regulating protein IIA Ntr.

Authors:  Xia Li; Alan Peterkofsky; Guangshun Wang
Journal:  Amino Acids       Date:  2008-04-18       Impact factor: 3.520

5.  Structure of phosphorylated enzyme I, the phosphoenolpyruvate:sugar phosphotransferase system sugar translocation signal protein.

Authors:  Alexey Teplyakov; Kap Lim; Peng-Peng Zhu; Geeta Kapadia; Celia C H Chen; Jennifer Schwartz; Andrew Howard; Prasad T Reddy; Alan Peterkofsky; Osnat Herzberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-19       Impact factor: 11.205

6.  Interdomain interaction and substrate coupling effects on dimerization and conformational stability of enzyme I of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system.

Authors:  Mariana N Dimitrova; Roman H Szczepanowski; Sergei B Ruvinov; Alan Peterkofsky; Ann Ginsburg
Journal:  Biochemistry       Date:  2002-01-22       Impact factor: 3.162

Review 7.  Biophysics of Parkinson's disease: structure and aggregation of alpha-synuclein.

Authors:  Vladimir N Uversky; David Eliezer
Journal:  Curr Protein Pept Sci       Date:  2009-10       Impact factor: 3.272

8.  Stimulation of the potassium sensor KdpD kinase activity by interaction with the phosphotransferase protein IIA(Ntr) in Escherichia coli.

Authors:  Denise Lüttmann; Ralf Heermann; Björn Zimmer; Antje Hillmann; Isabella Sofia Rampp; Kirsten Jung; Boris Görke
Journal:  Mol Microbiol       Date:  2009-04-28       Impact factor: 3.501

9.  Expression, purification, assay, and crystal structure of perdeuterated human arginase I.

Authors:  Luigi Di Costanzo; Martine Moulin; Michael Haertlein; Flora Meilleur; David W Christianson
Journal:  Arch Biochem Biophys       Date:  2007-05-21       Impact factor: 4.013

10.  The effect of deuteration on protein structure: a high-resolution comparison of hydrogenous and perdeuterated haloalkane dehalogenase.

Authors:  Xuying Liu; B Leif Hanson; Paul Langan; Ronald E Viola
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-08-17
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  5 in total

1.  Deuteration of nonexchangeable protons on proteins affects their thermal stability, side-chain dynamics, and hydrophobicity.

Authors:  Parker J Nichols; Isaac Falconer; Aaron Griffin; Colin Mant; Robert Hodges; Christopher J McKnight; Beat Vögeli; Liliya Vugmeyster
Journal:  Protein Sci       Date:  2020-05-26       Impact factor: 6.725

2.  Correlated motions of C'-N and Cα-Cβ pairs in protonated and per-deuterated GB3.

Authors:  Liliya Vugmeyster; Aaron Griffin; Dmitry Ostrovsky; Shibani Bhattacharya; Parker J Nichols; C James McKnight; Beat Vögeli
Journal:  J Biomol NMR       Date:  2018-08-18       Impact factor: 2.835

3.  Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate.

Authors:  Christian Opitz; Erik Ahrné; Kenneth N Goldie; Alexander Schmidt; Stephan Grzesiek
Journal:  J Biol Chem       Date:  2018-12-13       Impact factor: 5.157

4.  Reciprocal regulation of the autophosphorylation of enzyme INtr by glutamine and α-ketoglutarate in Escherichia coli.

Authors:  Chang-Ro Lee; Young-Ha Park; Miri Kim; Yeon-Ran Kim; Soyoung Park; Alan Peterkofsky; Yeong-Jae Seok
Journal:  Mol Microbiol       Date:  2013-03-21       Impact factor: 3.501

5.  Impact of Deuteration on the Assembly Kinetics of Transthyretin Monitored by Native Mass Spectrometry and Implications for Amyloidoses.

Authors:  Ai Woon Yee; Martine Moulin; Nina Breteau; Michael Haertlein; Edward P Mitchell; Jonathan B Cooper; Elisabetta Boeri Erba; V Trevor Forsyth
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-17       Impact factor: 15.336

  5 in total

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