Literature DB >> 21185449

Liquid chromatography-mass spectrometry-based proteomics of Nitrosomonas.

Hans J C T Wessels1, Jolein Gloerich, Erwin van der Biezen, Mike S M Jetten, Boran Kartal.   

Abstract

During the last century, the research on aerobic ammonium-oxidizing bacteria (AOB) lead to many exciting physiological and biochemical discoveries. Nevertheless the molecular biology of AOB is not well understood. The availability of the genome sequences of several Nitrosomonas species opened up new possiblities to use state of the art transcriptomic and proteomic tools to study AOB. With the currect technology, thousands of proteins can be analyzed in several hours of measurement and translated proteins can be detected at femtomole and attomole concentrations. Moreover, it is possible to use mass spectrometry-based proteomics approach to analyze the expression, subcellular localization, posttranslational modifications, and interactions of translated proteins. In this chapter, we describe our LC-MS/MS methodology and quality control strategy to study the protein complement of Nitrosomonas eutropha C91.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID： 21185449     DOI： 10.1016/B978-0-12-381294-0.00021-3

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


  8 in total

1.  Evolution of a new enzyme for carbon disulphide conversion by an acidothermophilic archaeon.

Authors:  Marjan J Smeulders; Thomas R M Barends; Arjan Pol; Anna Scherer; Marcel H Zandvoort; Anikó Udvarhelyi; Ahmad F Khadem; Andreas Menzel; John Hermans; Robert L Shoeman; Hans J C T Wessels; Lambert P van den Heuvel; Lina Russ; Ilme Schlichting; Mike S M Jetten; Huub J M Op den Camp
Journal:  Nature       Date:  2011-10-19       Impact factor: 49.962

2.  Identification of novel translational urinary biomarkers for acetaminophen-induced acute liver injury using proteomic profiling in mice.

Authors:  Rachel P L van Swelm; Coby M M Laarakkers; Ellen C van der Kuur; Eva Morava-Kozicz; Ron A Wevers; Kevin D Augustijn; Daan J Touw; Maro H Sandel; Rosalinde Masereeuw; Frans G M Russel
Journal:  PLoS One       Date:  2012-11-14       Impact factor: 3.240

3.  C7orf30 specifically associates with the large subunit of the mitochondrial ribosome and is involved in translation.

Authors:  Bas F J Wanschers; Radek Szklarczyk; Aleksandra Pajak; Mariël A M van den Brand; Jolein Gloerich; Richard J T Rodenburg; Robert N Lightowlers; Leo G Nijtmans; Martijn A Huynen
Journal:  Nucleic Acids Res       Date:  2012-01-11       Impact factor: 16.971

4.  Iterative orthology prediction uncovers new mitochondrial proteins and identifies C12orf62 as the human ortholog of COX14, a protein involved in the assembly of cytochrome c oxidase.

Authors:  Radek Szklarczyk; Bas Fj Wanschers; Thomas D Cuypers; John J Esseling; Moniek Riemersma; Mariël Am van den Brand; Jolein Gloerich; Edwin Lasonder; Lambert P van den Heuvel; Leo G Nijtmans; Martijn A Huynen
Journal:  Genome Biol       Date:  2012-02-22       Impact factor: 13.583

5.  The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium.

Authors:  Jack van de Vossenberg; Dagmar Woebken; Wouter J Maalcke; Hans J C T Wessels; Bas E Dutilh; Boran Kartal; Eva M Janssen-Megens; Guus Roeselers; Jia Yan; Daan Speth; Jolein Gloerich; Wim Geerts; Erwin van der Biezen; Wendy Pluk; Kees-Jan Francoijs; Lina Russ; Phyllis Lam; Stefanie A Malfatti; Susannah Green Tringe; Suzanne C M Haaijer; Huub J M Op den Camp; Henk G Stunnenberg; Rudi Amann; Marcel M M Kuypers; Mike S M Jetten
Journal:  Environ Microbiol       Date:  2012-05-09       Impact factor: 5.491

6.  Analysis of 953 human proteins from a mitochondrial HEK293 fraction by complexome profiling.

Authors:  Hans J C T Wessels; Rutger O Vogel; Robert N Lightowlers; Johannes N Spelbrink; Richard J Rodenburg; Lambert P van den Heuvel; Alain J van Gool; Jolein Gloerich; Jan A M Smeitink; Leo G Nijtmans
Journal:  PLoS One       Date:  2013-07-23       Impact factor: 3.240

7.  Proteomic Analysis of the Hydrogen and Carbon Monoxide Metabolism of Methanothermobacter marburgensis.

Authors:  Martijn Diender; Ricardo Pereira; Hans J C T Wessels; Alfons J M Stams; Diana Z Sousa
Journal:  Front Microbiol       Date:  2016-07-04       Impact factor: 5.640

8.  Effects of nitrogen dioxide and anoxia on global gene and protein expression in long-term continuous cultures of Nitrosomonas eutropha C91.

Authors:  Boran Kartal; Hans J C T Wessels; Erwin van der Biezen; Kees-Jan Francoijs; Mike S M Jetten; Martin G Klotz; Lisa Y Stein
Journal:  Appl Environ Microbiol       Date:  2012-05-04       Impact factor: 4.792
  8 in total

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