Literature DB >> 21183596

Development of a dry reagent-based triplex PCR for the detection of toxigenic and non-toxigenic Vibrio cholerae.

Ang Lim Chua1, Husni Tan Elina2, Boon Huat Lim1, Chan Yean Yean2, Manickam Ravichandran3, Pattabhiraman Lalitha3.   

Abstract

Vibrio cholerae has caused severe outbreaks of cholera worldwide with thousands of recorded deaths annually. Molecular diagnosis for cholera has become increasingly important for rapid detection of cholera as the conventional methods are time-consuming and labour intensive. However, traditional PCR tests still require cold-chain transportation and storage as well as trained personnel to perform, which makes them user-unfriendly. The aim of this study was to develop a thermostabilized triplex PCR test for cholera which is in a ready-to-use form and requires no cold chain. The PCR test specifically detects both toxigenic and non-toxigenic strains of V. cholerae based on the cholera toxin A (ctxA) and outer-membrane lipoprotein (lolB) genes. The thermostabilized triplex PCR also incorporates an internal amplification control that helps to check for PCR inhibitors in samples. PCR reagents and the specific primers were lyophilized into a pellet form in the presence of trehalose, which acts as an enzyme stabilizer. The triplex PCR was validated with 174 bacteria-spiked stool specimens and was found to be 100 % sensitive and specific. The stability of the thermostabilized PCR was evaluated using the Q10 method and it was found to be stable for approximately 7 months at 24 °C. The limit of detection of the thermostabilized triplex PCR assay was 2×10(4) c.f.u. at the bacterial cell level and 100 pg DNA at the genomic DNA level, comparable to conventional PCR methods. In conclusion, a rapid thermostabilized triplex PCR assay was developed for detecting toxigenic and non-toxigenic V. cholerae which requires minimal pipetting steps and is cold chain-free.

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Year:  2010        PMID: 21183596     DOI: 10.1099/jmm.0.027433-0

Source DB:  PubMed          Journal:  J Med Microbiol        ISSN: 0022-2615            Impact factor:   2.472


  11 in total

1.  Utilization of Small RNA Genes to Distinguish Vibrio cholerae Biotypes via Multiplex Polymerase Chain Reaction.

Authors:  Siti Aminah Ahmed; Carsten A Raabe; Hong Leong Cheah; Chee Hock Hoe; Timofey S Rozhdestvensky; Thean Hock Tang
Journal:  Am J Trop Med Hyg       Date:  2019-06       Impact factor: 2.345

2.  A novel triplex quantitative PCR strategy for quantification of toxigenic and nontoxigenic Vibrio cholerae in aquatic environments.

Authors:  Rupert Bliem; Sonja Schauer; Helga Plicka; Adelheid Obwaller; Regina Sommer; Adolf Steinrigl; Munirul Alam; Georg H Reischer; Andreas H Farnleitner; Alexander Kirschner
Journal:  Appl Environ Microbiol       Date:  2015-02-27       Impact factor: 4.792

3.  Multiplex PCR assay and lyophilization for detection of Salmonella spp., Staphylococcus aureus and Bacillus cereus in pork products.

Authors:  Narong Arunrut; Wansika Kiatpathomchai; Chiraporn Ananchaipattana
Journal:  Food Sci Biotechnol       Date:  2018-01-25       Impact factor: 2.391

4.  Lyophilized visually readable loop-mediated isothermal reverse transcriptase nucleic acid amplification test for detection Ebola Zaire RNA.

Authors:  Christoph Carter; Kevan Akrami; Drew Hall; Davey Smith; Eliah Aronoff-Spencer
Journal:  J Virol Methods       Date:  2017-02-24       Impact factor: 2.014

Review 5.  Loop-Mediated Isothermal Amplification Detection of SARS-CoV-2 and Myriad Other Applications.

Authors:  Keith J M Moore; Jeremy Cahill; Guy Aidelberg; Rachel Aronoff; Ali Bektaş; Daniela Bezdan; Daniel J Butler; Sridar V Chittur; Martin Codyre; Fernan Federici; Nathan A Tanner; Scott W Tighe; Randy True; Sarah B Ware; Anne L Wyllie; Evan E Afshin; Andres Bendesky; Connie B Chang; Richard Dela Rosa; Eran Elhaik; David Erickson; Andrew S Goldsborough; George Grills; Kathrin Hadasch; Andrew Hayden; Seong-Young Her; Julie A Karl; Chang Hee Kim; Alison J Kriegel; Thomas Kunstman; Zeph Landau; Kevin Land; Bradley W Langhorst; Ariel B Lindner; Benjamin E Mayer; Lee A McLaughlin; Matthew T McLaughlin; Jenny Molloy; Christopher Mozsary; Jerry L Nadler; Melinee D'Silva; David Ng; David H O'Connor; Jerry E Ongerth; Olayinka Osuolale; Ana Pinharanda; Dennis Plenker; Ravi Ranjan; Michael Rosbash; Assaf Rotem; Jacob Segarra; Stephan Schürer; Scott Sherrill-Mix; Helena Solo-Gabriele; Shaina To; Merly C Vogt; Albert D Yu; Christopher E Mason
Journal:  J Biomol Tech       Date:  2021-09

6.  Thermostable Heptaplex PCR Assay for the Detection of Six Respiratory Bacterial Pathogens.

Authors:  Nik Mohd Noor Nik Zuraina; Mohammed Dauda Goni; Khazani Nur Amalina; Habsah Hasan; Suharni Mohamad; Siti Suraiya
Journal:  Diagnostics (Basel)       Date:  2021-04-22

7.  Leapfrog diagnostics: Demonstration of a broad spectrum pathogen identification platform in a resource-limited setting.

Authors:  Tomasz A Leski; Rashid Ansumana; Anthony P Malanoski; David H Jimmy; Umaru Bangura; Brian R Barrows; Morie Alpha; Bashiru M Koroma; Nina C Long; Abu J Sundufu; Alfred S Bockarie; Baochuan Lin; David A Stenger
Journal:  Health Res Policy Syst       Date:  2012-07-04

8.  Development of a dry-reagent mix-based polymerase chain reaction as a novel tool for the identification of Acinetobacter species and its comparison with conventional polymerase chain reaction.

Authors:  Raghavendra D Kulkarni; Mukti Nath Mishra; Jeevanandam Mohanraj; Arun Chandrasekhar; G S Ajantha; Sheetal Kulkani; Shama Bhat
Journal:  J Lab Physicians       Date:  2018 Jan-Mar

9.  A Thermostabilized, One-Step PCR Assay for Simultaneous Detection of Klebsiella pneumoniae and Haemophilus influenzae.

Authors:  Nur Amalina Khazani; Nik Zuraina Nik Mohd Noor; Chan Yean Yean; Habsah Hasan; Siti Suraiya; Suharni Mohamad
Journal:  J Trop Med       Date:  2017-03-12

10.  Progress in loop-mediated isothermal amplification assay for detection of Schistosoma mansoni DNA: towards a ready-to-use test.

Authors:  J García-Bernalt Diego; P Fernández-Soto; B Crego-Vicente; S Alonso-Castrillejo; B Febrer-Sendra; A Gómez-Sánchez; B Vicente; J López-Abán; A Muro
Journal:  Sci Rep       Date:  2019-10-14       Impact factor: 4.379

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