Literature DB >> 21178769

Combining genome-wide data from humans and animal models of dyslipidemia and atherosclerosis.

Stela Z Berisha1, Jonathan D Smith.   

Abstract

PURPOSE OF REVIEW: Comparative genomics allows researchers to combine genome-wide association data from humans with studies in animal models in order to assist in the identification of the genes and the genetic variants that modify susceptibility to dyslipidemia and atherosclerosis. RECENT
FINDINGS: Association and linkage studies in human and rodent species have been successful in identifying genetic loci associated with complex traits, but have been less robust in identifying and validating the responsible gene and/or genetic variants. Recent technological advancements have assisted in the development of comparative genomic approaches, which rely on the combination of human and rodent datasets and bioinformatics tools, followed by the narrowing of concordant loci and improved identification of candidate genes and genetic variants. Additionally, candidate genes and genetic variants identified by these methods have been further validated and functionally investigated in animal models, a process that is not feasible in humans.
SUMMARY: Comparative genomic approaches have led to the identification and validation of several new genes, including a few not previously implicated, as modifiers of plasma lipid levels and atherosclerosis, yielding new insights into the biological mechanisms of these complex traits.

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Mesh:

Year:  2011        PMID: 21178769      PMCID: PMC3347921          DOI: 10.1097/MOL.0b013e328342a375

Source DB:  PubMed          Journal:  Curr Opin Lipidol        ISSN: 0957-9672            Impact factor:   4.776


  37 in total

1.  Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6 mb of mouse genome.

Authors:  Kelly A Frazer; Claire M Wade; David A Hinds; Nila Patil; David R Cox; Mark J Daly
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

Review 2.  Bioinformatics toolbox for narrowing rodent quantitative trait loci.

Authors:  Keith DiPetrillo; Xiaosong Wang; Ioannis M Stylianou; Beverly Paigen
Journal:  Trends Genet       Date:  2005-10-13       Impact factor: 11.639

3.  New target regions for human hypertension via comparative genomics.

Authors:  M Stoll; A E Kwitek-Black; A W Cowley; E L Harris; S B Harrap; J E Krieger; M P Printz; A P Provoost; J Sassard; H J Jacob
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

Review 4.  Genome-wide search for new genes controlling plasma lipid concentrations in mice and humans.

Authors:  Xiaosong Wang; Beverly Paigen
Journal:  Curr Opin Lipidol       Date:  2005-04       Impact factor: 4.776

Review 5.  Identifying novel genes for atherosclerosis through mouse-human comparative genetics.

Authors:  Xiaosong Wang; Naoki Ishimori; Ron Korstanje; Jarod Rollins; Beverly Paigen
Journal:  Am J Hum Genet       Date:  2005-05-19       Impact factor: 11.025

Review 6.  In search of new targets for plasma high-density lipoprotein cholesterol levels: promise of human-mouse comparative genomics.

Authors:  Jarod Rollins; Yaoyu Chen; Beverly Paigen; Xiaosong Wang
Journal:  Trends Cardiovasc Med       Date:  2006-10       Impact factor: 6.677

Review 7.  Genetics of variation in HDL cholesterol in humans and mice.

Authors:  Xiaosong Wang; Beverly Paigen
Journal:  Circ Res       Date:  2005-01-07       Impact factor: 17.367

8.  Quantitative trait loci analysis for plasma HDL-cholesterol concentrations and atherosclerosis susceptibility between inbred mouse strains C57BL/6J and 129S1/SvImJ.

Authors:  Naoki Ishimori; Renhua Li; Peter M Kelmenson; Ron Korstanje; Kenneth A Walsh; Gary A Churchill; Kristina Forsman-Semb; Beverly Paigen
Journal:  Arterioscler Thromb Vasc Biol       Date:  2003-10-30       Impact factor: 8.311

9.  Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.

Authors:  Richa Saxena; Benjamin F Voight; Valeriya Lyssenko; Noël P Burtt; Paul I W de Bakker; Hong Chen; Jeffrey J Roix; Sekar Kathiresan; Joel N Hirschhorn; Mark J Daly; Thomas E Hughes; Leif Groop; David Altshuler; Peter Almgren; Jose C Florez; Joanne Meyer; Kristin Ardlie; Kristina Bengtsson Boström; Bo Isomaa; Guillaume Lettre; Ulf Lindblad; Helen N Lyon; Olle Melander; Christopher Newton-Cheh; Peter Nilsson; Marju Orho-Melander; Lennart Råstam; Elizabeth K Speliotes; Marja-Riitta Taskinen; Tiinamaija Tuomi; Candace Guiducci; Anna Berglund; Joyce Carlson; Lauren Gianniny; Rachel Hackett; Liselotte Hall; Johan Holmkvist; Esa Laurila; Marketa Sjögren; Maria Sterner; Aarti Surti; Margareta Svensson; Malin Svensson; Ryan Tewhey; Brendan Blumenstiel; Melissa Parkin; Matthew Defelice; Rachel Barry; Wendy Brodeur; Jody Camarata; Nancy Chia; Mary Fava; John Gibbons; Bob Handsaker; Claire Healy; Kieu Nguyen; Casey Gates; Carrie Sougnez; Diane Gage; Marcia Nizzari; Stacey B Gabriel; Gung-Wei Chirn; Qicheng Ma; Hemang Parikh; Delwood Richardson; Darrell Ricke; Shaun Purcell
Journal:  Science       Date:  2007-04-26       Impact factor: 47.728

10.  Combining QTL data for HDL cholesterol levels from two different species leads to smaller confidence intervals.

Authors:  A Cox; S M Sheehan; I Klöting; B Paigen; R Korstanje
Journal:  Heredity (Edinb)       Date:  2010-06-16       Impact factor: 3.821

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  2 in total

Review 1.  Animal models of atherosclerosis.

Authors:  Godfrey S Getz; Catherine A Reardon
Journal:  Arterioscler Thromb Vasc Biol       Date:  2012-03-01       Impact factor: 8.311

2.  The JAX Synteny Browser for mouse-human comparative genomics.

Authors:  Georgi Kolishovski; Anna Lamoureux; Paul Hale; Joel E Richardson; Jill M Recla; Omoluyi Adesanya; Al Simons; Govindarajan Kunde-Ramamoorthy; Carol J Bult
Journal:  Mamm Genome       Date:  2019-11-27       Impact factor: 2.957

  2 in total

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