Literature DB >> 21168419

Crystal structures of the bacterial solute receptor AcbH displaying an exclusive substrate preference for β-D-galactopyranose.

Anke Licht1, Haydar Bulut, Frank Scheffel, Oliver Daumke, Udo F Wehmeier, Wolfram Saenger, Erwin Schneider, Ardeschir Vahedi-Faridi.   

Abstract

Solute receptors (binding proteins) are indispensable components of canonical ATP-binding cassette importers in prokaryotes. Here, we report on the characterization and crystal structures in the closed and open conformations of AcbH, the solute receptor of the putative carbohydrate transporter AcbFG which is encoded in the acarbose (acarviosyl-1,4-maltose) biosynthetic gene cluster from Actinoplanes sp. SE50/110. Binding assays identified AcbH as a high-affinity monosaccharide-binding protein with a dissociation constant (K(d)) for β-d-galactopyranose of 9.8±1.0 nM. Neither galactose-containing di- and trisaccharides, such as lactose and raffinose, nor monosaccharides including d-galacturonic acid, l-arabinose, d-xylose and l-rhamnose competed with [(1)(4)C]galactose for binding to AcbH. Moreover, AcbH does not bind d-glucose, which is a common property of all but one d-galactose-binding proteins characterized to date. Strikingly, determination of the X-ray structure revealed that AcbH is structurally homologous to maltose-binding proteins rather than to glucose-binding proteins. Two helices are inserted in the substrate-binding pocket, which reduces the cavity size and allows the exclusive binding of monosaccharides, specifically β-d-galactopyranose, in the (4)C(1) conformation. Site-directed mutagenesis of three residues from the binding pocket (Arg82, Asp361 and Arg362) that interact with the axially oriented O4-H hydroxyl of the bound galactopyranose and subsequent functional analysis indicated that these residues are crucial for galactose binding. To our knowledge, this is the first report of the tertiary structure of a solute receptor with exclusive affinity for β-d-galactopyranose. The putative role of a galactose import system in the context of acarbose metabolism in Actinoplanes sp. is discussed.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21168419     DOI: 10.1016/j.jmb.2010.11.048

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  7 in total

1.  High Resolution Structures of Periplasmic Glucose-binding Protein of Pseudomonas putida CSV86 Reveal Structural Basis of Its Substrate Specificity.

Authors:  Suman Pandey; Arnab Modak; Prashant S Phale; Prasenjit Bhaumik
Journal:  J Biol Chem       Date:  2016-02-09       Impact factor: 5.157

2.  Functional clues from the crystal structure of an orphan periplasmic ligand-binding protein from Treponema pallidum.

Authors:  Chad A Brautigam; Ranjit K Deka; Wei Z Liu; Diana R Tomchick; Michael V Norgard
Journal:  Protein Sci       Date:  2017-03-23       Impact factor: 6.725

3.  Biochemical and structural insights into xylan utilization by the thermophilic bacterium Caldanaerobius polysaccharolyticus.

Authors:  Yejun Han; Vinayak Agarwal; Dylan Dodd; Jason Kim; Brian Bae; Roderick I Mackie; Satish K Nair; Isaac K O Cann
Journal:  J Biol Chem       Date:  2012-08-22       Impact factor: 5.157

4.  The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110.

Authors:  Patrick Schwientek; Rafael Szczepanowski; Christian Rückert; Jörn Kalinowski; Andreas Klein; Klaus Selber; Udo F Wehmeier; Jens Stoye; Alfred Pühler
Journal:  BMC Genomics       Date:  2012-03-23       Impact factor: 3.969

5.  Reconstruction and in silico analysis of an Actinoplanes sp. SE50/110 genome-scale metabolic model for acarbose production.

Authors:  Yali Wang; Nan Xu; Chao Ye; Liming Liu; Zhongping Shi; Jing Wu
Journal:  Front Microbiol       Date:  2015-06-25       Impact factor: 5.640

6.  The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase.

Authors:  Julian Droste; Vera Ortseifen; Lena Schaffert; Marcus Persicke; Susanne Schneiker-Bekel; Alfred Pühler; Jörn Kalinowski
Journal:  BMC Genomics       Date:  2020-11-23       Impact factor: 3.969

7.  Improving acarbose production and eliminating the by-product component C with an efficient genetic manipulation system of Actinoplanes sp. SE50/110.

Authors:  Qinqin Zhao; Huixin Xie; Yao Peng; Xinran Wang; Linquan Bai
Journal:  Synth Syst Biotechnol       Date:  2017-11-27
  7 in total

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