Literature DB >> 21164534

DNA motifs that sculpt the bacterial chromosome.

Fabrice Touzain1, Marie-Agnès Petit, Sophie Schbath, Meriem El Karoui.   

Abstract

During the bacterial cell cycle, the processes of chromosome replication, DNA segregation, DNA repair and cell division are coordinated by precisely defined events. Tremendous progress has been made in recent years in identifying the mechanisms that underlie these processes. A striking feature common to these processes is that non-coding DNA motifs play a central part, thus 'sculpting' the bacterial chromosome. Here, we review the roles of these motifs in the mechanisms that ensure faithful transmission of genetic information to daughter cells. We show how their chromosomal distribution is crucial for their function and how it can be analysed quantitatively. Finally, the potential roles of these motifs in bacterial chromosome evolution are discussed.

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Year:  2011        PMID: 21164534     DOI: 10.1038/nrmicro2477

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  112 in total

1.  Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication.

Authors:  Patrick H Viollier; Martin Thanbichler; Patrick T McGrath; Lisandra West; Maliwan Meewan; Harley H McAdams; Lucy Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

2.  A DNA methylation ratchet governs progression through a bacterial cell cycle.

Authors:  Justine Collier; Harley H McAdams; Lucy Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

3.  AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes.

Authors:  Jan Mrázek; Shaohua Xie; Xiangxue Guo; Anuj Srivastava
Journal:  Bioinformatics       Date:  2008-02-26       Impact factor: 6.937

4.  Identification of oligonucleotide sequences that direct the movement of the Escherichia coli FtsK translocase.

Authors:  Oren Levy; Jerod L Ptacin; Paul J Pease; Jeff Gore; Michael B Eisen; Carlos Bustamante; Nicholas R Cozzarelli
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-21       Impact factor: 11.205

5.  High-affinity binding sites for the initiator protein DnaA on the chromosome of Escherichia coli.

Authors:  A Roth; W Messer
Journal:  Mol Microbiol       Date:  1998-04       Impact factor: 3.501

6.  Codon usage can explain GT-rich islands surrounding Chi sites on the Escherichia coli genome.

Authors:  V Biaudet; M El Karoui; A Gruss
Journal:  Mol Microbiol       Date:  1998-07       Impact factor: 3.501

Review 7.  Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

Authors:  Tsutomu Katayama; Shogo Ozaki; Kenji Keyamura; Kazuyuki Fujimitsu
Journal:  Nat Rev Microbiol       Date:  2010-03       Impact factor: 60.633

8.  Characteristics of Chi distribution on different bacterial genomes.

Authors:  M El Karoui; V Biaudet; S Schbath; A Gruss
Journal:  Res Microbiol       Date:  1999 Nov-Dec       Impact factor: 3.992

9.  SlmA, a nucleoid-associated, FtsZ binding protein required for blocking septal ring assembly over Chromosomes in E. coli.

Authors:  Thomas G Bernhardt; Piet A J de Boer
Journal:  Mol Cell       Date:  2005-05-27       Impact factor: 17.970

10.  An eleven-base-pair sequence determines the specificity of DNA uptake in Haemophilus transformation.

Authors:  D B Danner; R A Deich; K L Sisco; H O Smith
Journal:  Gene       Date:  1980-11       Impact factor: 3.688

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  27 in total

Review 1.  How RecBCD enzyme and Chi promote DNA break repair and recombination: a molecular biologist's view.

Authors:  Gerald R Smith
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

2.  Proximal recognition sites facilitate intrasite hopping by DNA adenine methyltransferase: mechanistic exploration of epigenetic gene regulation.

Authors:  Adam J Pollak; Norbert O Reich
Journal:  J Biol Chem       Date:  2012-05-07       Impact factor: 5.157

3.  FtsK actively segregates sister chromosomes in Escherichia coli.

Authors:  Mathieu Stouf; Jean-Christophe Meile; François Cornet
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-18       Impact factor: 11.205

4.  iN6-methylat (5-step): identifying DNA N6-methyladenine sites in rice genome using continuous bag of nucleobases via Chou's 5-step rule.

Authors:  Nguyen Quoc Khanh Le
Journal:  Mol Genet Genomics       Date:  2019-05-04       Impact factor: 3.291

Review 5.  Spo0M: structure and function beyond regulation of sporulation.

Authors:  Luz Adriana Vega-Cabrera; Christopher D Wood; Liliana Pardo-López
Journal:  Curr Genet       Date:  2017-06-02       Impact factor: 3.886

6.  Small-molecule inhibitors of bacterial AddAB and RecBCD helicase-nuclease DNA repair enzymes.

Authors:  Susan K Amundsen; Timothy Spicer; Ahmet C Karabulut; Luz Marina Londoño; Christina Eberhart; Virneliz Fernandez Vega; Thomas D Bannister; Peter Hodder; Gerald R Smith
Journal:  ACS Chem Biol       Date:  2012-03-23       Impact factor: 5.100

7.  Ribosomal protein L4 of Lactobacillus rhamnosus LRB alters resistance to macrolides and other antibiotics.

Authors:  Saswati Biswas; Andrew Keightley; Indranil Biswas
Journal:  Mol Oral Microbiol       Date:  2020-02-21       Impact factor: 3.563

Review 8.  Recent progress in Bacillus subtilis sporulation.

Authors:  Douglas Higgins; Jonathan Dworkin
Journal:  FEMS Microbiol Rev       Date:  2011-10-25       Impact factor: 16.408

9.  Molecular determinants responsible for recognition of the single-stranded DNA regulatory sequence, χ, by RecBCD enzyme.

Authors:  Naofumi Handa; Liang Yang; Mark S Dillingham; Ichizo Kobayashi; Dale B Wigley; Stephen C Kowalczykowski
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-17       Impact factor: 11.205

Review 10.  The bacterial cell cycle, chromosome inheritance and cell growth.

Authors:  Rodrigo Reyes-Lamothe; David J Sherratt
Journal:  Nat Rev Microbiol       Date:  2019-08       Impact factor: 60.633

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