Literature DB >> 21153851

A hyperactive cobalt-substituted extradiol-cleaving catechol dioxygenase.

Andrew J Fielding1, Elena G Kovaleva, Erik R Farquhar, John D Lipscomb, Lawrence Que.   

Abstract

Homoprotocatechuate 2,3-dioxygenase from Brevibacterium fuscum (HPCD) has an Fe(II) center in its active site that can be replaced with Mn(II) or Co(II). Whereas Mn-HPCD exhibits steady-state kinetic parameters comparable to those of Fe-HPCD, Co-HPCD behaves somewhat differently, exhibiting significantly higher [Formula: see text] and k (cat). The high activity of Co-HPCD is surprising, given that cobalt has the highest standard M(III/II) redox potential of the three metals. Comparison of the X-ray crystal structures of the resting and substrate-bound forms of Fe-HPCD, Mn-HPCD, and Co-HPCD shows that metal substitution has no effect on the local ligand environment, the conformational integrity of the active site, or the overall protein structure, suggesting that the protein structure does not differentially tune the potential of the metal center. Analysis of the steady-state kinetics of Co-HPCD suggests that the Co(II) center alters the relative rate constants for the interconversion of intermediates in the catalytic cycle but still allows the dioxygenase reaction to proceed efficiently. When compared with the kinetic data for Fe-HPCD and Mn-HPCD, these results show that dioxygenase catalysis can proceed at high rates over a wide range of metal redox potentials. This is consistent with the proposed mechanism in which the metal mediates electron transfer between the catechol substrate and O(2) to form the postulated [M(II)(semiquinone)superoxo] reactive species. These kinetic differences and the spectroscopic properties of Co-HPCD provide new tools with which to explore the unique O(2) activation mechanism associated with the extradiol dioxygenase family.

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Year:  2010        PMID: 21153851      PMCID: PMC3192431          DOI: 10.1007/s00775-010-0732-0

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  48 in total

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3.  Structural and electronic mimics of the active site of cobalt(II)-substituted zinc metalloenzymes.

Authors:  W D Horrocks; J N Ishley; B Holmquist; J S Thompson
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4.  Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.

Authors:  Y Uragami; T Senda; K Sugimoto; N Sato; V Nagarajan; E Masai; M Fukuda; Y Mitsu
Journal:  J Inorg Biochem       Date:  2001-02       Impact factor: 4.155

Review 5.  The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes.

Authors:  Kevin D Koehntop; Joseph P Emerson; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2005-03-01       Impact factor: 3.358

6.  Kinetic and spectroscopic investigation of CoII, NiII, and N-oxalylglycine inhibition of the FeII/alpha-ketoglutarate dioxygenase, TauD.

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7.  Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase.

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8.  Swapping metals in Fe- and Mn-dependent dioxygenases: evidence for oxygen activation without a change in metal redox state.

Authors:  Joseph P Emerson; Elena G Kovaleva; Erik R Farquhar; John D Lipscomb; Lawrence Que
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-20       Impact factor: 11.205

Review 9.  High-valent iron in chemical and biological oxidations.

Authors:  John T Groves
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10.  Manganese(II)-dependent extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis CM-2.

Authors:  A K Whiting; Y R Boldt; M P Hendrich; L P Wackett; L Que
Journal:  Biochemistry       Date:  1996-01-09       Impact factor: 3.162

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  30 in total

1.  In vivo self-hydroxylation of an iron-substituted manganese-dependent extradiol cleaving catechol dioxygenase.

Authors:  Erik R Farquhar; Joseph P Emerson; Kevin D Koehntop; Mark F Reynolds; Milena Trmčić; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2011-01-30       Impact factor: 3.358

Review 2.  Ring-cleaving dioxygenases with a cupin fold.

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Journal:  Appl Environ Microbiol       Date:  2012-01-27       Impact factor: 4.792

3.  Oxy intermediates of homoprotocatechuate 2,3-dioxygenase: facile electron transfer between substrates.

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4.  Structure and Spectroscopy of Alkene-Cleaving Dioxygenases Containing an Atypically Coordinated Non-Heme Iron Center.

Authors:  Xuewu Sui; Andrew C Weitz; Erik R Farquhar; Mohsen Badiee; Surajit Banerjee; Johannes von Lintig; Gregory P Tochtrop; Krzysztof Palczewski; Michael P Hendrich; Philip D Kiser
Journal:  Biochemistry       Date:  2017-05-19       Impact factor: 3.162

Review 5.  Metallation and mismetallation of iron and manganese proteins in vitro and in vivo: the class I ribonucleotide reductases as a case study.

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Journal:  Metallomics       Date:  2012-09-18       Impact factor: 4.526

6.  The alkenyl migration mechanism catalyzed by extradiol dioxygenases: a hybrid DFT study.

Authors:  Tomasz Borowski; Anna Wójcik; Anna Miłaczewska; Valentin Georgiev; Margareta R A Blomberg; Per E M Siegbahn
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Review 7.  Superoxide dismutases and superoxide reductases.

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Review 8.  Emergence of metal selectivity and promiscuity in metalloenzymes.

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Review 9.  Oxygen activation by mononuclear Mn, Co, and Ni centers in biology and synthetic complexes.

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Review 10.  A two-electron-shell game: intermediates of the extradiol-cleaving catechol dioxygenases.

Authors:  Andrew J Fielding; John D Lipscomb; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2014-03-11       Impact factor: 3.358

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