| Literature DB >> 21151467 |
Amdoun Ryad1, Khelifi Lakhdar, Khelifi-Slaoui Majda, Amroune Samia, Asch Mark, Assaf-Ducrocq Corinne, Gontier Eric.
Abstract
Traditionally, optimization in biological analyses has been carried out by monitoring the influence of one factor at a time; this technique is called one-variable-at-a-time. The disadvantage of this technique is that it does not include any interactive effects among the variables studied and requires a large number of experiments. Therefore, in recent years, the Response Surface Methodology (RSM) has become the most popular optimization method. It is an effective mathematical and statistical technique which has been widely used in optimization studies with minimal experimental trials where interactive factors may be involved. This present study follows on from our previous work, where RSM was used to optimize the B5 medium composition in [NO(3-)], [Ca(2+)] and sucrose to attain the best production of hyoscyamine (HS) from the hairy roots (HRs) of Datura stramonium elicited by Jasmonic Acid (JA). The present paper focuses on the use of the RSM in biological studies, such as plant material, to establish a predictive model with the planning of experiments, analysis of the model, diagnostics and adjustment for the accuracy of the model. With the RSM, only 20 experiments were necessary to determine optimal concentrations. The model could be employed to carry out interpolations and predict the response to elicitation. Applying this model, the optimization of the HS level was 212.7% for the elicited HRs of Datura stramonium, cultured in B5-OP medium (optimized), in comparison with elicited HRs cultured in B5 medium (control). The optimal concentrations, under experimental conditions, were determined to be: 79.1 mM [NO(3-)], 11.4 mM [Ca(2+)] and 42.9 mg/L of sucrose.Entities:
Keywords: Datura stramonium; Response Surface Methodology; hairy root; hyoscyamine; medium components; optimization
Mesh:
Substances:
Year: 2010 PMID: 21151467 PMCID: PMC3000111 DOI: 10.3390/ijms11114726
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1.Experimental region and levels of each of the three factors of the CCD (X: [NO3−], X: [Ca2+] and X: sucrose).
ANOVA table for the quadratic model (results in bold are significant).
| Model | 9537.1 | 10 | 953.7 | 414.1 | |
| Residual | 20.7 | 9 | 2.3 | ||
| Lack of fit | 16.1 | 4 | 4.0 | 4.3 | 0.1 |
| Pure Error | 4.7 | 5 | 0.9 | ||
| Total | 9557.8 | 19 | |||
Analysis terms for the quadratic model (results in bold are significant).
| 104.8 | 172.2 | - | |
| 10.5 | 24.6 | ||
| 5.5 | 12.9 | ||
| 4.2 | 9.8 | ||
| 3.5 | 6.5 | ||
| 1.0 | 1.9 | 0.1 | |
| 1.0 | 1.9 | 0.1 | |
| −16.4 | −35.4 | ||
| −14.4 | −31.1 | ||
| −14.5 | −31.3 | ||
| 0.7 | 1.3 | 0.2 |
Figure 2.Diagnostic plot: (A) Studentized residuals versus predicted values; (B) normal probability plot of the studentized residuals.
Diagnostics for influential observations (Results in bold are outliers).
| R1 | −1 | −1 | −1 | 43.8 | 43.9 | −0.1 | 0.8 | 0.0 | −0.4 |
| R2 | 1 | −1 | −1 | 56.8 | 57.5 | −0.7 | 0.8 | 0.5 | |
| R3 | −1 | 1 | −1 | 46.8 | 47.5 | −0.7 | 0.8 | 0.5 | |
| R4 | 1 | 1 | −1 | 70.8 | 72.0 | −1.3 | 0.8 | ||
| R5 | −1 | −1 | 1 | 51.2 | 49.8 | 1.4 | 0.8 | ||
| R6 | 1 | −1 | 1 | 65.2 | 64.4 | 0.8 | 0.8 | 0.7 | |
| R7 | −1 | 1 | 1 | 55.2 | 54.4 | 0.8 | 0.8 | 0.7 | |
| R8 | 1 | 1 | 1 | 86.2 | 86.0 | 0.2 | 0.8 | 0.1 | 0.7 |
| R9 | −1.52 | 0 | 0 | 50.0 | 50.9 | −0.9 | 0.6 | 0.1 | |
| R10 | 1.52 | 0 | 0 | 83.6 | 83.0 | 0.7 | 0.6 | 0.1 | 0.8 |
| R11 | 0 | −1.52 | 0 | 62.3 | 63.1 | −0.8 | 0.6 | 0.1 | −0.9 |
| R12 | 0 | 1.52 | 0 | 80.6 | 79.9 | 0.7 | 0.6 | 0.1 | 0.7 |
| R13 | 0 | 0 | −1.52 | 66.7 | 64.8 | 1.8 | 0.6 | 0.4 | |
| R14 | 0 | 0 | 1.52 | 75.5 | 77.5 | −2.0 | 0.6 | 0.5 | |
| R15 | 0 | 0 | 0 | 103.8 | 104. 8 | −1.0 | 0.2 | 0.0 | −0.3 |
| R16 | 0 | 0 | 0 | 104.7 | 104.8 | −0.0 | 0.2 | 0.0 | 0.0 |
| R17 | 0 | 0 | 0 | 105.1 | 104.8 | 0.3 | 0.2 | 0.0 | 0.1 |
| R18 | 0 | 0 | 0 | 106.4 | 104.8 | 1.6 | 0.2 | 0.0 | 0.5 |
| R19 | 0 | 0 | 0 | 103.8 | 104.8 | −1.0 | 0.2 | 0.0 | −0.3 |
| R20 | 0 | 0 | 0 | 104.9 | 104.8 | 0.1 | 0.2 | 0.0 | 0.0 |
| R4 | 1 | 1 | −1 | 70.8 | 74.8 | −4.0 | 0.6 | 0.9 | |
| R8 | 1 | 1 | 1 | 86.2 | 83.2 | 2.3 | 0.5 | 0.5 | |
| R14 | 0 | 0 | 1.52 | 75.5 | 77.5 | −2.0 | 0.6 | 0.5 | |
Figure 3.Box-Cox plot for power transformations (Yλ).
Figure 4.Response Surface plots showing effects of [NO3−] and [Ca2+] as a function of standard error (StdErr) (A) and the HS level for elicited HRs (B).
Figure 5.Appearance of HRs on the 28th day of culture in B5-OP (A) in 250 mL Erlenmeyer; (B) in Petri dishes and in B5 control (C) in Petri dishes.
Biomass and HS production of HRs cultivated in B5 control medium or B5-OP medium after the 28th day of culture
| B5 | 8.4 ± 0.6 | 2.1 ± 0.1 | 4.2 ± 0.6 | 17.6 ± 1.6 | 35.3 ± 2.0 | |
| B5-OP | 12.7 ± 0.2 | 3.8 ± 0.1 | 8.5 ± 0.3 | 48.3 ± 2.3 | 110.3 ± 1.4 | |
| Optimization | 51.2% | 81% | 101.2% | 173.6% | 212.7% | |
| LSD test | differences | −4.3 | −1.7 | −4.3 | −30.6 | −75.0 |
| ±limits | 0.9 | 0.2 | 0.8 | 4.4 | 13.8 | |
| significance | significant | significant | significant | significant | significant | |
B5 control (25 mM NO3−, 1.0 mM Ca2+ and 3% sucrose);
B5-OP optimized (79.1 mM NO3−, 11.4 mM Ca2+ and 42.9% sucrose).