Literature DB >> 10761922

Yeast Sm-like proteins function in mRNA decapping and decay.

S Tharun1, W He, A E Mayes, P Lennertz, J D Beggs, R Parker.   

Abstract

One of the main mechanisms of messenger RNA degradation in eukaryotes occurs by deadenylation-dependent decapping which leads to 5'-to-3' decay. A family of Sm-like (Lsm) proteins has been identified, members of which contain the 'Sm' sequence motif, form a complex with U6 small nuclear RNA and are required for pre-mRNA splicing. Here we show that mutations in seven yeast Lsm proteins (Lsm1-Lsm7) also lead to inhibition of mRNA decapping. In addition, the Lsm1-Lsm7 proteins co-immunoprecipitate with the mRNA decapping enzyme (Dcp1), a decapping activator (Pat1/Mrt1) and with mRNA. This indicates that the Lsm proteins may promote decapping by interactions with the mRNA and the decapping machinery. In addition, the Lsm complex that functions in mRNA decay appears to be distinct from the U6-associated Lsm complex, indicating that Lsm proteins form specific complexes that affect different aspects of mRNA metabolism.

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Year:  2000        PMID: 10761922     DOI: 10.1038/35006676

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  208 in total

1.  The Sm domain is an ancient RNA-binding motif with oligo(U) specificity.

Authors:  T Achsel; H Stark; R Lührmann
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

2.  Symmetrical dimethylation of arginine residues in spliceosomal Sm protein B/B' and the Sm-like protein LSm4, and their interaction with the SMN protein.

Authors:  H Brahms; L Meheus; V de Brabandere; U Fischer; R Lührmann
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

3.  A cis-acting element known to block 3' mRNA degradation enhances expression of polyA-minus mRNA in wild-type yeast cells and phenocopies a ski mutant.

Authors:  J T Brown; A W Johnson
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

4.  Computational modeling of eukaryotic mRNA turnover.

Authors:  D Cao; R Parker
Journal:  RNA       Date:  2001-09       Impact factor: 4.942

5.  Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein.

Authors:  R S Pillai; C L Will; R Lührmann; D Schümperli; B Müller
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

6.  Xenopus LSm proteins bind U8 snoRNA via an internal evolutionarily conserved octamer sequence.

Authors:  Nenad Tomasevic; Brenda A Peculis
Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

7.  Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay.

Authors:  Jens Lykke-Andersen
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

8.  The decapping activator HPat a novel factor co-purifying with GW182 from Drosophila cells.

Authors:  Elisabeth Jäger; Silke Dorner
Journal:  RNA Biol       Date:  2010-05-14       Impact factor: 4.652

9.  Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 A resolution.

Authors:  Debanu Das; Piotr Kozbial; Herbert L Axelrod; Mitchell D Miller; Daniel McMullan; S Sri Krishna; Polat Abdubek; Claire Acosta; Tamara Astakhova; Prasad Burra; Dennis Carlton; Connie Chen; Hsiu-Ju Chiu; Thomas Clayton; Marc C Deller; Lian Duan; Ylva Elias; Marc-André Elsliger; Dustin Ernst; Carol Farr; Julie Feuerhelm; Anna Grzechnik; Slawomir K Grzechnik; Joanna Hale; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Hope A Johnson; Heath E Klock; Mark W Knuth; Abhinav Kumar; David Marciano; Andrew T Morse; Kevin D Murphy; Edward Nigoghossian; Amanda Nopakun; Linda Okach; Silvya Oommachen; Jessica Paulsen; Christina Puckett; Ron Reyes; Christopher L Rife; Natasha Sefcovic; Sebastian Sudek; Henry Tien; Christine Trame; Christina V Trout; Henry van den Bedem; Dana Weekes; Aprilfawn White; Qingping Xu; Keith O Hodgson; John Wooley; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Proteins       Date:  2009-05-01

10.  Analysis of the products of mRNA decapping and 3'-to-5' decay by denaturing gel electrophoresis.

Authors:  Naomi Bergman; Mateusz Opyrchal; Elizabeth J Bates; Jeffrey Wilusz
Journal:  RNA       Date:  2002-07       Impact factor: 4.942

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