Literature DB >> 21148421

Perturbing the folding energy landscape of the bacterial immunity protein Im7 by site-specific N-linked glycosylation.

Mark M Chen1, Alice I Bartlett, Paul S Nerenberg, Claire T Friel, Christian P R Hackenberger, Collin M Stultz, Sheena E Radford, Barbara Imperiali.   

Abstract

N-linked glycosylation modulates protein folding and stability through a variety of mechanisms. As such there is considerable interest in the development of general rules to predict the structural consequences of site-specific glycosylation and to understand how these effects can be exploited in the design and development of modified proteins with advantageous properties. In this study, expressed protein ligation is used to create site-specifically glycosylated variants of the bacterial immunity protein Im7 modified with the chitobiose disaccharide (GlcNAc-GlcNAc). Glycans were introduced at seven solvent exposed sites within the Im7 sequence and the kinetic and thermodynamic consequences of N-linked glycosylation analyzed. The ΔΔG° values for glycan incorporation were found to range from +5.2 to -3.8 kJ·mol(-1). In several cases, glycosylation influences folding by modulating the local conformational preferences of the glycosylated sequence. These locally mediated effects are most prominent in the center of α-helices where glycosylation negatively effects folding and in compact turn motifs between segments of ordered secondary structure where glycosylation promotes folding and enhances the overall stability of the native protein. The studies also provide insight into why glycosylation is commonly identified at the transition between different types of secondary structure and when glycosylation may be used to elaborate protein structure to protect disordered sequences from proteolysis or immune system recognition.

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Year:  2010        PMID: 21148421      PMCID: PMC3012502          DOI: 10.1073/pnas.1015356107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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Authors:  A Imberty; S Pérez
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Authors:  B Imperiali; K W Rickert
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Review 5.  Glycoprotein folding, quality control and ER-associated degradation.

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Review 6.  N-linked oligosaccharides as outfitters for glycoprotein folding, form and function.

Authors:  Nivedita Mitra; Sharmistha Sinha; Thirumalai N C Ramya; Avadhesha Surolia
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7.  Carbohydrate solution simulations: producing a force field with experimentally consistent primary alcohol rotational frequencies and populations.

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Journal:  J Comput Chem       Date:  2002-10       Impact factor: 3.376

8.  The mechanism of folding of Im7 reveals competition between functional and kinetic evolutionary constraints.

Authors:  Claire T Friel; D Alastair Smith; Michele Vendruscolo; Joerg Gsponer; Sheena E Radford
Journal:  Nat Struct Mol Biol       Date:  2009-03-01       Impact factor: 15.369

9.  Desolvation and development of specific hydrophobic core packing during Im7 folding.

Authors:  Alice I Bartlett; Sheena E Radford
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

Review 10.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

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  25 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

5.  Structural and energetic basis of carbohydrate-aromatic packing interactions in proteins.

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6.  Chemically Precise Glycoengineering Improves Human Insulin.

Authors:  Xiaoyang Guan; Patrick K Chaffey; Xiuli Wei; Daniel R Gulbranson; Yuan Ruan; Xinfeng Wang; Yaohao Li; Yan Ouyang; Liqun Chen; Chen Zeng; Theo N Koelsch; Amy H Tran; Wei Liang; Jingshi Shen; Zhongping Tan
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Review 7.  Glucosidase II and MRH-domain containing proteins in the secretory pathway.

Authors:  Cecilia D'Alessio; Nancy M Dahms
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8.  N-glycosylation of enhanced aromatic sequons to increase glycoprotein stability.

Authors:  Joshua L Price; Elizabeth K Culyba; Wentao Chen; Amber N Murray; Sarah R Hanson; Chi-Huey Wong; Evan T Powers; Jeffery W Kelly
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9.  Optimized protocol for expression and purification of membrane-bound PglB, a bacterial oligosaccharyl transferase.

Authors:  Marcie B Jaffee; Barbara Imperiali
Journal:  Protein Expr Purif       Date:  2013-04-12       Impact factor: 1.650

10.  Preferred conformations of N-glycan core pentasaccharide in solution and in glycoproteins.

Authors:  Sunhwan Jo; Yifei Qi; Wonpil Im
Journal:  Glycobiology       Date:  2015-09-24       Impact factor: 4.313

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