Literature DB >> 21145790

Post-genomics resources and tools for studying apicomplexan metabolism.

Stacy S Hung1, John Parkinson.   

Abstract

The phylum Apicomplexa comprises over 5000 species of obligate intracellular parasites, many responsible for diseases that significantly impact human health and economics. To aid drug development programs, global sequencing initiatives are generating increasing numbers of apicomplexan genomes. The challenge is how best to exploit these resources to identify effective therapeutic targets. Because of its important role in growth and maintenance, much interest has centred on metabolism. However, in the absence of detailed biochemical data, reconstructing the metabolic potential from a fully sequenced genome remains problematic. In this review current resources and tools facilitating the metabolic reconstruction for apicomplexans are examined. Furthermore, how these datasets can be utilized to explore the metabolic capabilities of apicomplexans are discussed and targets for therapeutic intervention are prioritized.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21145790     DOI: 10.1016/j.pt.2010.11.003

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  7 in total

Review 1.  Vitamin and cofactor acquisition in apicomplexans: Synthesis versus salvage.

Authors:  Aarti Krishnan; Joachim Kloehn; Matteo Lunghi; Dominique Soldati-Favre
Journal:  J Biol Chem       Date:  2019-11-25       Impact factor: 5.157

Review 2.  Genomics of apicomplexan parasites.

Authors:  Lakshmipuram Seshadri Swapna; John Parkinson
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-02-22       Impact factor: 8.250

3.  Improved enzyme annotation with EC-specific cutoffs using DETECT v2.

Authors:  Nirvana Nursimulu; Leon L Xu; James D Wasmuth; Ivan Krukov; John Parkinson
Journal:  Bioinformatics       Date:  2018-10-01       Impact factor: 6.937

4.  Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites.

Authors:  Achchuthan Shanmugasundram; Faviel F Gonzalez-Galarza; Jonathan M Wastling; Olga Vasieva; Andrew R Jones
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

5.  Metabolic reconstruction identifies strain-specific regulation of virulence in Toxoplasma gondii.

Authors:  Carl Song; Melissa A Chiasson; Nirvana Nursimulu; Stacy S Hung; James Wasmuth; Michael E Grigg; John Parkinson
Journal:  Mol Syst Biol       Date:  2013-11-19       Impact factor: 11.429

6.  Identification of Novel O-Linked Glycosylated Toxoplasma Proteins by Vicia villosa Lectin Chromatography.

Authors:  Kevin Wang; Eric D Peng; Amy S Huang; Dong Xia; Sarah J Vermont; Gaelle Lentini; Maryse Lebrun; Jonathan M Wastling; Peter J Bradley
Journal:  PLoS One       Date:  2016-03-07       Impact factor: 3.240

7.  Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation.

Authors:  Lakshmipuram Seshadri Swapna; Alyssa M Molinaro; Nicole Lindsay-Mosher; Bret J Pearson; John Parkinson
Journal:  Genome Biol       Date:  2018-08-24       Impact factor: 13.583

  7 in total

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