Literature DB >> 21143212

Highly consistent, fully representative mRNA-Seq libraries from ten nanograms of total RNA.

Srikumar Sengupta1, Victor Ruotti, Jennifer Bolin, Angela Elwell, Alvaro Hernandez, James Thomson, Ron Stewart.   

Abstract

Preparation of an Illumina sequencing library for gene expression analysis (mRNA-Seq) requires microgram amounts of starting total RNA or PCR-based amplification. Here we describe a protocol based on T7 linear RNA amplification that does not introduce significant bias, requires only 10 ng total RNA, and generates a directional, fully representative, whole-transcript mRNA-Seq Illumina library that is highly consistent across over three orders of magnitude of input RNA.

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Year:  2010        PMID: 21143212     DOI: 10.2144/000113556

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  12 in total

1.  Trehalose-enhanced isolation of neuronal sub-types from adult mouse brain.

Authors:  Alka Saxena; Akiko Wagatsuma; Yukihiko Noro; Takenobu Kuji; Atsuko Asaka-Oba; Akira Watahiki; Cecile Gurnot; Michela Fagiolini; Takao K Hensch; Piero Carninci
Journal:  Biotechniques       Date:  2012-06       Impact factor: 1.993

2.  Proteomic and phosphoproteomic comparison of human ES and iPS cells.

Authors:  Douglas H Phanstiel; Justin Brumbaugh; Craig D Wenger; Shulan Tian; Mitchell D Probasco; Derek J Bailey; Danielle L Swaney; Mark A Tervo; Jennifer M Bolin; Victor Ruotti; Ron Stewart; James A Thomson; Joshua J Coon
Journal:  Nat Methods       Date:  2011-09-11       Impact factor: 28.547

3.  Clinical and ethical considerations of massively parallel sequencing in transplantation science.

Authors:  Andreas Scherer
Journal:  World J Transplant       Date:  2013-12-24

4.  RNA-seq in the tetraploid Xenopus laevis enables genome-wide insight in a classic developmental biology model organism.

Authors:  Nirav M Amin; Panna Tandon; Erin Osborne Nishimura; Frank L Conlon
Journal:  Methods       Date:  2013-06-20       Impact factor: 3.608

5.  Transcriptome characterization by RNA-Seq reveals the involvement of the complement components in noise-traumatized rat cochleae.

Authors:  M Patel; Z Hu; J Bard; J Jamison; Q Cai; B H Hu
Journal:  Neuroscience       Date:  2013-05-30       Impact factor: 3.590

6.  Chemically defined conditions for human iPSC derivation and culture.

Authors:  Guokai Chen; Daniel R Gulbranson; Zhonggang Hou; Jennifer M Bolin; Victor Ruotti; Mitchell D Probasco; Kimberly Smuga-Otto; Sara E Howden; Nicole R Diol; Nicholas E Propson; Ryan Wagner; Garrett O Lee; Jessica Antosiewicz-Bourget; Joyce M C Teng; James A Thomson
Journal:  Nat Methods       Date:  2011-04-10       Impact factor: 28.547

7.  Whole-transcriptome RNAseq analysis from minute amount of total RNA.

Authors:  Muhammad A Tariq; Hyunsung J Kim; Olufisayo Jejelowo; Nader Pourmand
Journal:  Nucleic Acids Res       Date:  2011-07-06       Impact factor: 16.971

8.  Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.

Authors:  Srikumar Sengupta; Jennifer M Bolin; Victor Ruotti; Bao Kim Nguyen; James A Thomson; Angela L Elwell; Ron Stewart
Journal:  J Vis Exp       Date:  2011-10-27       Impact factor: 1.355

9.  A cost-effective RNA sequencing protocol for large-scale gene expression studies.

Authors:  Zhonggang Hou; Peng Jiang; Scott A Swanson; Angela L Elwell; Bao Kim S Nguyen; Jennifer M Bolin; Ron Stewart; James A Thomson
Journal:  Sci Rep       Date:  2015-04-01       Impact factor: 4.379

10.  Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.

Authors:  Ron Stewart; Cynthia Alexander Rascón; Shulan Tian; Jeff Nie; Chris Barry; Li-Fang Chu; Hamisha Ardalani; Ryan J Wagner; Mitchell D Probasco; Jennifer M Bolin; Ning Leng; Srikumar Sengupta; Michael Volkmer; Bianca Habermann; Elly M Tanaka; James A Thomson; Colin N Dewey
Journal:  PLoS Comput Biol       Date:  2013-03-07       Impact factor: 4.475

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