Literature DB >> 21142213

Linkage of microRNA and proteome-based profiling data sets: a perspective for the priorization of candidate biomarkers in renal cell carcinoma?

Barbara Seliger1, Simon Jasinski, Sven P Dressler, Francesco M Marincola, Christian V Recktenwald, Ena Wang, Rudolf Lichtenfels.   

Abstract

Despite recent advances in the understanding of the biology of renal cell carcinoma (RCC) and the implementation of novel targeted therapies, the overall 5 years' survival rate for RCC patients remains disappointing. Late presentation, tumor heterogeneity and in particular the lack of molecular biomarkers for early detection and classification represent major obstacles. Global, untargeted comparative analysis of RCC vs tumor adjacent renal epithelium (NN) samples by high throughput analyses both at the transcriptome and proteome level have identified signatures, which might further clarify the molecular differences of RCC subtypes and might allow the identification of suitable therapeutic targets and diagnostic/prognostic biomarkers, but none thereof has yet been implemented in routine clinical use. The increasing knowledge regarding the functional role of noncoding microRNA (miR) in physiological, developmental, and pathophysiological processes by shaping the protein expression profile might provide an important link to improve the definition of disease-relevant regulatory networks. Taking into account that miR profiling of RCC and NN provides robust signatures discriminating between malignant and normal tissues, the concept of evaluating and scoring miR/protein pairs might represent a strategy for the selection and prioritization of potential biomarkers and their translation into practical use.

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Year:  2011        PMID: 21142213      PMCID: PMC3506708          DOI: 10.1021/pr1011137

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  102 in total

1.  Combinatorial microRNA target predictions.

Authors:  Azra Krek; Dominic Grün; Matthew N Poy; Rachel Wolf; Lauren Rosenberg; Eric J Epstein; Philip MacMenamin; Isabelle da Piedade; Kristin C Gunsalus; Markus Stoffel; Nikolaus Rajewsky
Journal:  Nat Genet       Date:  2005-04-03       Impact factor: 38.330

2.  Polymorphisms in human pre-miRNAs.

Authors:  Naoharu Iwai; Hiroaki Naraba
Journal:  Biochem Biophys Res Commun       Date:  2005-06-17       Impact factor: 3.575

3.  Tumour-related enzyme alterations in the clear cell type of human renal cell carcinoma identified by two-dimensional gel electrophoresis.

Authors:  S Balabanov; U Zimmermann; C Protzel; C Scharf; K J Klebingat; R Walther
Journal:  Eur J Biochem       Date:  2001-11

4.  Heat shock protein expression and anti-heat shock protein reactivity in renal cell carcinoma.

Authors:  Rudolf Lichtenfels; Roland Kellner; Jürgen Bukur; Joachim Beck; Walburgis Brenner; Angelika Ackermann; Barbara Seliger
Journal:  Proteomics       Date:  2002-05       Impact factor: 3.984

5.  Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.

Authors:  Lee P Lim; Nelson C Lau; Philip Garrett-Engele; Andrew Grimson; Janell M Schelter; John Castle; David P Bartel; Peter S Linsley; Jason M Johnson
Journal:  Nature       Date:  2005-01-30       Impact factor: 49.962

6.  A microRNA polycistron as a potential human oncogene.

Authors:  Lin He; J Michael Thomson; Michael T Hemann; Eva Hernando-Monge; David Mu; Summer Goodson; Scott Powers; Carlos Cordon-Cardo; Scott W Lowe; Gregory J Hannon; Scott M Hammond
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

7.  MicroRNA expression profiles classify human cancers.

Authors:  Jun Lu; Gad Getz; Eric A Miska; Ezequiel Alvarez-Saavedra; Justin Lamb; David Peck; Alejandro Sweet-Cordero; Benjamin L Ebert; Raymond H Mak; Adolfo A Ferrando; James R Downing; Tyler Jacks; H Robert Horvitz; Todd R Golub
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

8.  Expression profiling of renal epithelial neoplasms: a method for tumor classification and discovery of diagnostic molecular markers.

Authors:  A N Young; M B Amin; C S Moreno; S D Lim; C Cohen; J A Petros; F F Marshall; A S Neish
Journal:  Am J Pathol       Date:  2001-05       Impact factor: 4.307

9.  Modified expression of plasma glutathione peroxidase and manganese superoxide dismutase in human renal cell carcinoma.

Authors:  C Sarto; S Frutiger; F Cappellano; J C Sanchez; G Doro; F Catanzaro; G J Hughes; D F Hochstrasser; P Mocarelli
Journal:  Electrophoresis       Date:  1999-11       Impact factor: 3.535

10.  Combined analysis of transcriptome and proteome data as a tool for the identification of candidate biomarkers in renal cell carcinoma.

Authors:  Barbara Seliger; Sven P Dressler; Ena Wang; Roland Kellner; Christian V Recktenwald; Friedrich Lottspeich; Francesco M Marincola; Maja Baumgärtner; Derek Atkins; Rudolf Lichtenfels
Journal:  Proteomics       Date:  2009-03       Impact factor: 3.984

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  5 in total

Review 1.  MicroRNAs in liver disease.

Authors:  Xin Wei Wang; Niels H H Heegaard; Henrik Orum
Journal:  Gastroenterology       Date:  2012-04-11       Impact factor: 22.682

2.  MiR-210 expression in tumor tissue and in vitro effects of its silencing in renal cell carcinoma.

Authors:  Martina Redova; Alexandr Poprach; Andrej Besse; Robert Iliev; Jana Nekvindova; Radek Lakomy; Lenka Radova; Marek Svoboda; Jan Dolezel; Rostislav Vyzula; Ondrej Slaby
Journal:  Tumour Biol       Date:  2012-11-13

Review 3.  Micromanaging aerobic respiration and glycolysis in cancer cells.

Authors:  Ayla V Orang; Janni Petersen; Ross A McKinnon; Michael Z Michael
Journal:  Mol Metab       Date:  2019-02-06       Impact factor: 8.568

4.  Identification of HGD and GSTZ1 as Biomarkers Involved Metabolic Reprogramming in Kidney Renal Clear Cell Carcinoma.

Authors:  Jiyan Wang; Hongkai Chang; Meng Su; Yaya Qiao; Huanran Sun; Yongshan Zhao; Shuai Zhang; Changliang Shan
Journal:  Int J Mol Sci       Date:  2022-04-21       Impact factor: 5.923

Review 5.  Noncoding RNAs: the shot callers in tumor immune escape.

Authors:  Lei Liu; Qin Wang; Zhilin Qiu; Yujuan Kang; Jiena Liu; Shipeng Ning; Yanling Yin; Da Pang; Shouping Xu
Journal:  Signal Transduct Target Ther       Date:  2020-06-19
  5 in total

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