Literature DB >> 21141727

Dynamics of histone lysine methylation: structures of methyl writers and erasers.

Anup K Upadhyay1, Xiaodong Cheng.   

Abstract

In Eukarya, the packaging of DNA into chromatin provides a barrier that allows for regulation of access to the genome. Chromatin is refractory to processes acting on DNA. ATP-dependent chromatin remodeling machines and histone-modifying complexes can overcome this barrier (or strengthen it in silencing processes). Both components of chromatin (DNA and histones) are subject to postsynthetic covalent modifications, including methylation of lysines (the focus of this chapter). These lysine marks are generated by a host of histone lysine methyltransferases (writers) and can be removed by histone lysine demethylases (erasers). Importantly, epigenetic modifications impact chromatin structure directly or can be read by effector regulatory modules. Here, we summarize current knowledge on structural and functional properties of various histone lysine methyltransfereases and demethylases, with emphasis on their importance as druggable targets.

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Year:  2011        PMID: 21141727      PMCID: PMC3048032          DOI: 10.1007/978-3-7643-8989-5_6

Source DB:  PubMed          Journal:  Prog Drug Res        ISSN: 0071-786X


  103 in total

1.  The language of covalent histone modifications.

Authors:  B D Strahl; C D Allis
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

2.  The epigenetic magic of histone lysine methylation.

Authors:  Thomas Jenuwein
Journal:  FEBS J       Date:  2006-07       Impact factor: 5.542

3.  JmjC-domain-containing proteins and histone demethylation.

Authors:  Robert J Klose; Eric M Kallin; Yi Zhang
Journal:  Nat Rev Genet       Date:  2006-09       Impact factor: 53.242

4.  Crystal structure and mechanism of human lysine-specific demethylase-1.

Authors:  Pete Stavropoulos; Günter Blobel; André Hoelz
Journal:  Nat Struct Mol Biol       Date:  2006-06-25       Impact factor: 15.369

5.  Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins.

Authors:  M Lachner; D O'Carroll; S Rea; K Mechtler; T Jenuwein
Journal:  Nature       Date:  2001-03-01       Impact factor: 49.962

6.  Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase.

Authors:  Maojun Yang; Christian B Gocke; Xuelian Luo; Dominika Borek; Diana R Tomchick; Mischa Machius; Zbyszek Otwinowski; Hongtao Yu
Journal:  Mol Cell       Date:  2006-08-04       Impact factor: 17.970

7.  Crystal structure of human histone lysine-specific demethylase 1 (LSD1).

Authors:  Yong Chen; Yuting Yang; Feng Wang; Ke Wan; Kenichi Yamane; Yi Zhang; Ming Lei
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-06       Impact factor: 11.205

8.  Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.

Authors:  Kazutoshi Takahashi; Shinya Yamanaka
Journal:  Cell       Date:  2006-08-10       Impact factor: 41.582

9.  Direct spectroscopic detection of a C-H-cleaving high-spin Fe(IV) complex in a prolyl-4-hydroxylase.

Authors:  Lee M Hoffart; Eric W Barr; Robert B Guyer; J Martin Bollinger; Carsten Krebs
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-26       Impact factor: 11.205

10.  Regulation of chromatin structure by site-specific histone H3 methyltransferases.

Authors:  S Rea; F Eisenhaber; D O'Carroll; B D Strahl; Z W Sun; M Schmid; S Opravil; K Mechtler; C P Ponting; C D Allis; T Jenuwein
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

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  15 in total

1.  The H3K4me3 histone demethylase Fbxl10 is a regulator of chemokine expression, cellular morphology, and the metabolome of fibroblasts.

Authors:  Andreas Janzer; Katrin Stamm; Astrid Becker; Andreas Zimmer; Reinhard Buettner; Jutta Kirfel
Journal:  J Biol Chem       Date:  2012-07-23       Impact factor: 5.157

2.  Identification and characterization of nardilysin as a novel dimethyl H3K4-binding protein involved in transcriptional regulation.

Authors:  Jing Li; Mingyue Chu; Shanshan Wang; Doug Chan; Shankang Qi; Meng Wu; Zhongliang Zhou; Jiwen Li; Eiichiro Nishi; Jun Qin; Jiemin Wong
Journal:  J Biol Chem       Date:  2012-01-30       Impact factor: 5.157

Review 3.  Epigenetics in male reproduction: effect of paternal diet on sperm quality and offspring health.

Authors:  Undraga Schagdarsurengin; Klaus Steger
Journal:  Nat Rev Urol       Date:  2016-08-31       Impact factor: 14.432

Review 4.  Dietary phytochemicals as epigenetic modifiers in cancer: Promise and challenges.

Authors:  Eswar Shankar; Rajnee Kanwal; Mario Candamo; Sanjay Gupta
Journal:  Semin Cancer Biol       Date:  2016-04-23       Impact factor: 15.707

Review 5.  Metabolic control of the epigenome in systemic Lupus erythematosus.

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Journal:  Autoimmunity       Date:  2013-10-16       Impact factor: 2.815

6.  Pharmacologic disruption of Polycomb Repressive Complex 2 inhibits tumorigenicity and tumor progression in prostate cancer.

Authors:  Francesco Crea; Elaine M Hurt; Lesley A Mathews; Stephanie M Cabarcas; Lei Sun; Victor E Marquez; Romano Danesi; William L Farrar
Journal:  Mol Cancer       Date:  2011-04-18       Impact factor: 27.401

Review 7.  Impact of soy isoflavones on the epigenome in cancer prevention.

Authors:  Maria Pudenz; Kevin Roth; Clarissa Gerhauser
Journal:  Nutrients       Date:  2014-10-15       Impact factor: 5.717

Review 8.  The expanding role of epigenetics.

Authors:  Georgia Kalozoumi; Christos Tzimas; Despina Sanoudou
Journal:  Glob Cardiol Sci Pract       Date:  2012-07-04

9.  Differential mRNA expression levels of human histone-modifying enzymes in normal karyotype B cell pediatric acute lymphoblastic leukemia.

Authors:  Yan-Fang Tao; Li Pang; Xiao-Juan Du; Li-Chao Sun; Shao-Yan Hu; Jun Lu; Lan Cao; Wen-Li Zhao; Xing Feng; Jian Wang; Dong Wu; Na Wang; Jian Ni; Jian Pan
Journal:  Int J Mol Sci       Date:  2013-02-06       Impact factor: 5.923

Review 10.  Transcriptional and epigenetic substrates of methamphetamine addiction and withdrawal: evidence from a long-access self-administration model in the rat.

Authors:  Jean Lud Cadet; Christie Brannock; Subramaniam Jayanthi; Irina N Krasnova
Journal:  Mol Neurobiol       Date:  2014-06-18       Impact factor: 5.590

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