| Literature DB >> 21139980 |
Johanna M Seddon1, Robyn Reynolds, Bernard Rosner.
Abstract
OBJECTIVE: A novel locus in the hepatic lipase (LIPC) gene was found to be significantly related to advanced age-related macular degeneration (AMD) in our genome-wide association study. We evaluated its association and interaction with previously identified genetic variants and modifiable factors.Entities:
Mesh:
Substances:
Year: 2010 PMID: 21139980 PMCID: PMC2994762
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Distribution of demographic and behavioral risk factors for advanced age-related macular degeneration and controls according to hepatic lipase-C (LIPC) genotypes.
| 50-69 | 89 | (70) | 92 | (76) | 21 | (81) | | 38 | (46) | 28 | (56) | 4 | (57) | |
| 70-95 | 39 | (30) | 29 | (24) | 5 | (19) | 0.30 | 44 | (54) | 22 | (44) | 3 | (43) | 0.57 |
| Male | 58 | (45) | 57 | (47) | 10 | (38) | | 44 | (54) | 24 | (48) | 3 | (43) | |
| Female | 70 | (55) | 64 | (53) | 16 | (62) | 0.49 | 38 | (46) | 26 | (52) | 4 | (57) | 0.58 |
| High School or Less | 7 | (5) | 4 | (3) | 1 | (4) | | 7 | (9) | 6 | (12) | 0 | 0.0 | |
| College or more | 121 | (95) | 117 | (97) | 25 | (96) | 0.80 | 75 | (91) | 44 | (88) | 7 | 100.0 | 0.47 |
| Never | 67 | (52) | 56 | (46) | 15 | (58) | | 30 | (37) | 16 | (32) | 3 | (43) | |
| Former | 58 | (45) | 57 | (47) | 10 | (38) | 0.50 | 42 | (51) | 31 | (62) | 3 | (43) | 0.71 |
| Current | 3 | (2) | 8 | (7) | 1 | (4) | 0.99 | 10 | (12) | 3 | (6) | 1 | (14) | 1.00 |
| <25.0 | 39 | (30) | 40 | (33) | 9 | (35) | | 23 | (28) | 16 | (32) | 3 | (43) | |
| 25.0-29.9 | 55 | (43) | 59 | (49) | 13 | (50) | 0.98 | 35 | (43) | 20 | (40) | 1 | (14) | 0.17 |
| ≥ 30.0 | 34 | (27) | 22 | (18) | 4 | (15) | 0.35 | 24 | (29) | 14 | (28) | 3 | (43) | 0.97 |
| P for Trend | | | | | | | 0.40 | | | | | | | 0.97 |
| No Antioxidants | 69 | (54) | 66 | (55) | 17 | (65) | | 44 | (54) | 30 | (60) | 4 | (57) | |
| Antioxidants | 59 | (46) | 55 | (45) | 9 | (35) | 0.28 | 38 | (46) | 20 | (40) | 3 | (43) | 0.84 |
| Males | | 1543.1 | | 1703.1 | | 1520.6 | 0.55 | | 1329.5 | | 1549.6 | | 1100.7 | 0.67 |
| Females | | 1468.0 | | 1374.1 | | 1607.8 | 0.91 | | 1221.2 | | 1361.6 | | 1193.4 | 0.65 |
| 50-69 | 102 | (48) | 89 | (51) | 4 | (19) | 140 | (48) | 117 | (52) | 8 | (29) | ||
| 70-95 | 109 | (52) | 85 | (49) | 17 | (81) | 0.01 | 153 | (52) | 107 | (48) | 20 | (71) | 0.05 |
| Male | 88 | (42) | 64 | (37) | 6 | (29) | 132 | (45) | 88 | (39) | 9 | (32) | ||
| Female | 123 | (58) | 110 | (63) | 15 | (71) | 0.24 | 161 | (55) | 136 | (61) | 19 | (68) | 0.18 |
| High School or Less | 32 | (15) | 11 | (6) | 5 | (24) | 39 | (13) | 17 | (8) | 5 | (18) | ||
| College or more | 179 | (85) | 163 | (94) | 16 | (76) | 0.24 | 254 | (87) | 207 | (92) | 23 | (82) | 0.48 |
| Never | 78 | (37) | 70 | (40) | 11 | (52) | 108 | (37) | 86 | (38) | 14 | (50) | ||
| Former | 108 | (51) | 82 | (47) | 8 | (38) | 0.18 | 150 | (51) | 113 | (50) | 11 | (39) | 0.17 |
| Current | 25 | (12) | 22 | (13) | 2 | (10) | 0.48 | 35 | (12) | 25 | (11) | 3 | (11) | 0.53 |
| <25.0 | 45 | (21) | 51 | (29) | 4 | (19) | 68 | (23) | 67 | (30) | 7 | (25) | ||
| 25.0-29.9 | 100 | (47) | 74 | (43) | 10 | (48) | 0.86 | 135 | (46) | 94 | (42) | 11 | (39) | 0.63 |
| ≥ 30.0 | 66 | (31) | 49 | (28) | 7 | (33) | 0.79 | 90 | (31) | 63 | (28) | 10 | (36) | 0.87 |
| p for Trend | 0.80 | 0.84 | ||||||||||||
| No Antioxidants | 109 | (52) | 84 | (48) | 8 | (38) | 153 | (52) | 114 | (51) | 12 | (43) | ||
| Antioxidants | 102 | (48) | 90 | (52) | 13 | (62) | 0.24 | 140 | (48) | 110 | (49) | 16 | (57) | 0.34 |
| Males | 1430.4 | 1651.6 | 1295.3 | 0.28 | 1395.9 | 1623.1 | 1226.9 | 0.25 | ||||||
| Females | 1254.8 | 1203.0 | 1315.6 | 0.86 | 1246.8 | 1231.8 | 1288.9 | 0.98 | ||||||
*p value indicates the relationship between the number of T alleles for LIPC and each category of the variable.
Associations between hepatic lipase-C (LIPC) genotypes and ather AMD related genetic variants
| | | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TT | 42 | (33) | 57 | (47) | 14 | (54) | | 14 | (17) | 8 | (16) | 1 | (14) | |
| CT | 67 | (52) | 48 | (40) | 8 | (31) | | 32 | (39) | 20 | (40) | 3 | (43) | |
| CC | 19 | (15) | 16 | (13) | 4 | (15) | 0.096 | 36 | (44) | 22 | (44) | 3 | (43) | 0.86 |
| TT | 16 | (13) | 25 | (21) | 6 | (23) | | 1 | (1) | 2 | (4) | 1 | (14) | |
| CT | 65 | (51) | 64 | (53) | 14 | (54) | | 27 | (33) | 11 | (22) | 3 | (43) | |
| CC | 47 | (37) | 32 | (27) | 6 | (23) | 0.23 | 54 | (66) | 37 | (74) | 3 | (43) | 0.035 |
| GG | 89 | (70) | 78 | (65) | 16 | (62) | | 27 | (33) | 21 | (42) | 3 | (43) | |
| GT | 34 | (28) | 39 | (32) | 10 | (39) | | 40 | (49) | 24 | (48) | 4 | (57) | |
| TT | 3 | (2) | 4 | (3) | 0 | 0.0 | 0.60 | 15 | (18) | 5 | (10) | 0 | 0.0 | 0.18 |
| CC | 101 | (79) | 91 | (75) | 19 | (73) | | 76 | (93) | 47 | (94) | 7 | 100.0 | |
| CT/TT | 27 | (21) | 30 | (25) | 7 | (27) | 0.57 | 6 | (7) | 3 | (6) | 0 | 0.0 | 0.45 |
| GG | 116 | (91) | 106 | (88) | 24 | (92) | | 79 | (96) | 49 | (98) | 7 | 100.0 | |
| CG/CC | 12 | (9) | 15 | (12) | 2 | (8) | 0.71 | 3 | (4) | 1 | (2) | 0 | 0.0 | 0.57 |
| CC | 82 | (64) | 74 | (61) | 14 | (54) | | 42 | (51) | 25 | (50) | 4 | (57) | |
| CG | 44 | (34) | 40 | (33) | 11 | (42) | | 33 | (40) | 23 | (46) | 2 | (29) | |
| GG | 2 | (2) | 7 | (6) | 1 | (4) | 0.60 | 7 | (9) | 2 | (4) | 1 | (14) | 0.66 |
| CC | 36 | (28) | 40 | (33) | 11 | (42) | | 18 | (22) | 7 | (14) | 1 | (14) | |
| CT | 59 | (46) | 64 | (53) | 11 | (42) | | 40 | (49) | 28 | (56) | 4 | (57) | |
| TT | 33 | (26) | 17 | (14) | 4 | (15) | 0.30 | 24 | (29) | 15 | (30) | 2 | (29) | 0.99 |
| | | |||||||||||||
| TT | 37 | (18) | 24 | (14) | 4 | (19) | | 51 | (17) | 32 | (14) | 5 | (18) | |
| CT | 98 | (47) | 77 | (44) | 9 | (43) | | 130 | (44) | 97 | (43) | 12 | (43) | |
| CC | 76 | (36) | 73 | (42) | 8 | (38) | 0.88 | 112 | (38) | 95 | (42) | 11 | (39) | 0.10 |
| TT | 10 | (5) | 5 | (3) | 1 | (5) | | 11 | (4) | 7 | (3) | 2 | (7) | |
| CT | 62 | (29) | 44 | (25) | 6 | (29) | | 89 | (30) | 55 | (25) | 9 | (32) | |
| CC | 139 | (66) | 125 | (72) | 14 | (67) | 0.99 | 193 | (66) | 162 | (72) | 17 | (61) | 0.34 |
| GG | 62 | (29) | 48 | (28) | 6 | (29) | | 89 | (30) | 69 | (31) | 9 | (32) | |
| GT | 108 | (51) | 83 | (48) | 8 | (38) | | 148 | (51) | 107 | (48) | 12 | (43) | |
| TT | 41 | (19) | 43 | (25) | 7 | (33) | 0.16 | 56 | (19) | 48 | (21) | 7 | (25) | 0.49 |
| CC | 191 | (90) | 162 | (93) | 20 | (95) | | 267 | (91) | 209 | (93) | 27 | (96) | |
| CT/TT | 20 | (10) | 12 | (7) | 1 | (5) | 0.45 | 26 | (9) | 15 | (7) | 1 | (4) | 0.31 |
| GG | 197 | (93) | 167 | (96) | 21 | 100 | 276 | (94) | 216 | (96) | 28 | 100.0 | ||
| CG/CC | 14 | (7) | 7 | (4) | 0 | 0.0 | 0.19 | 17 | (6) | 8 | (4) | 0 | 0.0 | 0.16 |
| CC | 98 | (47) | 88 | (51) | 10 | (48) | | 140 | (48) | 113 | (50) | 14 | (50) | |
| CG | 95 | (45) | 72 | (41) | 10 | (48) | | 128 | (44) | 95 | (42) | 12 | (43) | |
| GG | 18 | (9) | 14 | (8) | 1 | (5) | 0.56 | 25 | (9) | 16 | (7) | 2 | (7) | 0.77 |
| CC | 47 | (22) | 41 | (24) | 6 | (29) | | 65 | (22) | 48 | (21) | 7 | (25) | |
| CT | 118 | (56) | 76 | (44) | 12 | (57) | | 158 | (54) | 104 | (46) | 16 | (57) | |
| TT | 46 | (22) | 57 | (33) | 3 | (14) | 0.44 | 70 | (24) | 72 | (32) | 5 | (18) | 0.50 |
*P for trend for overall association between number of T alleles for LIPC and number of risk/protective alleles for other genotypes, or presence of at least 1 risk/protective allele for CFB and C2.
Multivariate analyses of associations between advanced age-related macular degeneration (AMD), hepatic lipase-C (LIPC) genotypes, and demographic, genetic, and behavioral risk factors.
| Multivariate model 1 | ||||||
| CC | 1.0 | | 1.0 | | 1.0 | |
| CT | 0.9 (0.7-1.2) | 0.529 | 0.7 (0.4-1.1) | 0.143 | 1.0 (0.7-1.4) | 0.87 |
| TT | 0.5 (0.2-0.9) | 0.014 | 0.5 (0.2-1.3) | 0.152 | 0.4 (0.2-0.9) | 0.02 |
| Number of T alleles (p - trend) | | 0.047 | | 0.062 | | 0.105 |
| Multivariate Model 2 | ||||||
| CC | 1.0 | | 1.0 | | 1.0 | |
| CT | 1.0 (0.6 - 1.4) | 0.846 | 0.9 (0.5-1.6) | 0.805 | 1.0 (0.6-1.5) | 0.97 |
| TT | 0.5 (0.2 - 1.1) | 0.077 | 0.7 (0.2-2.2) | 0.555 | 0.4 (0.2-1.1) | 0.066 |
| Number of T alleles (p - trend) | | 0.21 | | 0.587 | | 0.22 |
| Multivariate Model 1 | ||||||
| <70 | 1.0 | | 1.0 | | 1.0 | |
| ≥70 | 3.2 (2.3 - 4.4) | <0.0001 | 2.9 (1.8 - 4.6) | <0.0001 | 3.3 (2.3 - 4.7) | <0.0001 |
| Multivariate Model 2 | ||||||
| <70 | 1.0 | | 1.0 | | 1.0 | |
| ≥70 | 3.3 (2.2 - 4.9) | <0.0001 | 3.1 (1.8 - 5.4) | <0.0001 | 3.9 (2.5 - 6.0) | <0.0001 |
| Multivariate Model 1 | ||||||
| Male | 1.0 | | 1.0 | | 1.0 | |
| Female | 0.8 (0.6 - 1.1) | 0.125 | 1.2 (0.8 - 1.9) | 0.437 | 0.7 (0.5 - 1.0) | 0.026 |
| Multivariate Model 2 | ||||||
| Male | 1.0 | | 1.0 | | 1.0 | |
| Female | 0.9 (0.6 - 1.3) | 0.42 | 1.2 (0.7 - 2.1) | 0.442 | 0.7 (0.5 - 1.1) | 0.13 |
| Multivariate Model 1 | ||||||
| ≤HS | 1.0 | | 1.0 | | 1.0 | |
| >HS | 0.4 (0.2 - 0.8) | 0.007 | 0.4 (0.2 - 1.0) | 0.061 | 0.4 (0.2 - 0.7) | 0.005 |
| Multivariate Model 2 | ||||||
| ≤HS | 1.0 | | 1.0 | | 1.0 | |
| >HS | 0.5 (0.2 - 1.1) | 0.079 | 0.4 (0.1 - 1.1) | 0.074 | 0.6 (0.2 - 1.4) | 0.2 |
| Multivariate Model 1 | ||||||
| Ever | 1.0 | | 1.0 | | 1.0 | |
| Past | 1.5 (1.1 - 2.2) | 0.01 | 1.8 (1.1 - 2.9) | 0.016 | 1.5 (1.1 - 2.1) | 0.024 |
| Current | 3.9 (2.0 - 7.7) | <0.0001 | 4.0 (1.6 - 9.6) | 0.002 | 3.9 (1.9 - 7.9) | 0.0002 |
| Multivariate Model 2 | ||||||
| Never | 1.0 | | 1.0 | | 1.0 | |
| Past | 2.0 (1.3 - 3.0) | 0.001 | 1.8 (1.0 - 3.1) | 0.054 | 2.1 (1.3 - 3.3) | 0.001 |
| Current | 4.5 (2.1 - 10.1) | 0.0002 | 4.3 (1.4 - 13.0) | 0.009 | 4.8 (2.1 - 11.2) | 0.0002 |
| Multivariate Model 1 | ||||||
| <25 | 1.0 | | 1.0 | | 1.0 | |
| 25 - 29.9 | 1.3 (0.9 - 1.9) | 0.15 | 1.1 (0.6 - 1.8) | 0.85 | 1.4 (1.0 - 2.1) | 0.085 |
| >=30 | 2.0 (1.3 - 3.1) | 0.002 | 1.8 (1.0 - 3.2) | 0.057 | 2.1 (1.3 - 3.4) | 0.002 |
| (p-trend) | | 0.002 | | 0.064 | | 0.002 |
| Multivariate Model 2 | ||||||
| <25 | 1.0 | | 1.0 | | 1.0 | |
| 25 - 29.9 | 1.2 (0.7 - 1.9) | 0.5 | 0.9 (0.5 - 1.7) | 0.72 | 1.4 (0.8 - 2.3) | 0.20 |
| >=30 | 2.0 (1.2 - 3.3) | 0.01 | 1.7 (0.8 - 3.5) | 0.15 | 2.3 (1.3 - 4.0) | 0.005 |
| (p-trend) | | 0.01 | | 0.81 | | 0.005 |
| Multivariate Model 1 | ||||||
| 1st tertile | 1.0 | | 1.0 | | 1.0 | |
| 2nd tertile | 0.7 (0.5 - 1.1) | 0.13 | 0.7 (0.4 - 1.3) | 0.25 | 0.8 (0.5 - 1.2) | 0.27 |
| 3rd tertile | 0.6 (0.4 - 1.0) | 0.029 | 0.6 (0.4 - 1.1) | 0.11 | 0.7 (0.4 - 1.0) | 0.056 |
| (p - trend) | | 0.031 | | 0.114 | | 0.057 |
| Multivariate Model 2 | ||||||
| 1st tertile | 1.0 | | 1.0 | | 1.0 | |
| 2nd tertile | 0.8 (0.5 - 1.3) | 0.46 | 0.7 (0.4 - 1.3) | 0.28 | 0.9 (0.6 - 1.6) | 0.79 |
| 3rd tertile | 0.7 (0.4 - 1.1) | 0.099 | 0.6 (0.3 - 1.1) | 0.077 | 0.8 (0.5 - 1.3) | 0.30 |
| (p - trend) | 0.097 | 0.078 | 0.29 | |||
OR=Odds Ratio, CI=95% Confidence Interval Multivariate 1=Model Adjusted for age (50 - 69, 70 −95), gender, education (≤ high school versus > high school), smoking (never, past, current), BMI (<25, 25 - 29.9, ≥30), LIPC (CC, CT, TT), antioxidant treatment (supplement containing antioxidants versus supplement containing no antioxidants), calorie adjusted lutein (tertile ranges micrograms: females-1=170.7 - 1096.6, 2=1096.7 - 1685.8, 3=1685.9 - 7259.0; males-1=151.4 - 1107.7, 2=1107.8 - 1669.0, 3=1669.1 - 11614.0) Multivariate 2=Model Adjusted for all variables in Multivariate 1 plus CFH Y402H (TT, CT, CC), CFH rs1410966 (TT, CT, CC), C2 (GG, CG/CC), CFB (CC,CT/TT), ARMS2/HTRA1 (GG, GT, TT), C3 (CC, CG, GG), CFI (CC, CT, TT).
Assessment of effect of interactions between hepatic lipase-C (LIPC) genotype and lifestyle factors on risk of age-related macular degeneration (AMD).
| Number of cases | | | | | |
| | Combined Advanced AMD | 293 | 224 | 28 | |
| | Geographic Atrophy | 82 | 50 | 7 | |
| | Neovascular AMD | 211 | 174 | 21 | |
| Number of controls | | 128 | 121 | 26 | |
| | | OR (CI)* | OR (CI)* | OR (CI)* | |
| Combined Advanced AMD | | | | | |
| | <25 | 1.0 | 1.1 (0.6 - 2.0) | 0.6 (0.2 - 1.8) | |
| | 25+ | 1.7 (1.0 - 2.8) | 1.4 (0.8 - 2.3) | 0.7 (0.3 - 1.6) | |
| | P (Interaction) | 0.40 (CT vs. CC) | 0.59 (TT vs. CC) | 0.4 | |
| Combined Advanced AMD | | | | | |
| | Never | 1.0 | 1.1 (0.7 - 1.8) | 0.6 (0.2 - 1.3) | |
| | Ever | 2.1 (1.4 - 3.3) | 1.6 (1.0 - 2.5) | 0.7 (0.3 - 1.8) | |
| | P (Interaction) | | 0.27 (CT vs CC) | 0.43 (TT vs. CC) | 0.3 |
| Combined Advanced AMD | | | | | |
| calorie adjusted, | ≤mean† | 1.0 | 0.8 (0.5 - 1.3) | 0.7 (0.3 - 1.7) | |
| sex specific | > mean† | 0.7 (0.4 - 1.1) | 0.7 (0.4 - 1.1) | 0.2 (0.1 - 0.5) | |
| P (Interaction) | 0.62 (CT vs. CC) | 0.11 (TT vs. CC) | 0.83 | ||
*OR=Odds Ratio (adjusted for age, gender, education and all other variables in the table), CI=95% Confidence Interval †Mean Lutein=1355 µg.
Assessment of effect of interactions between hepatic lipase (LIPC) genotype (rs10468017) and other genes on risk of age-related macular degeneration.
| | | ||
|---|---|---|---|
| | Combined Advanced AMD | 293 | 252 |
| | Geographic Atrophy | 82 | 57 |
| | Neovascular AMD | 211 | 195 |
| Number of controls | | 128 | 147 |
| | | OR (CI) * | OR (CI) * |
| Combined Advanced AMD | | | |
| | TT | 1.0 | 0.5 (0.3 - 0.9) |
| | CT | 1.7 (1.0 - 2.9) | 1.9 (1.1 - 3.3) |
| | CC | 5.6 (2.8 - 11.0) | 5.3 (2.7 - 10.3) |
| | p (interaction) | | 0.12 (CT-TT versus CC) |
| Combined advanced AMD | | | |
| | TT | 1.0 | 0.6 (0.2 - 2.0) |
| | CT | 2.8 (1.1 - 6.7) | 1.6 (0.7 - 4.0) |
| | CC | 7.8 (3.2 - 19.0) | 9.9 (4.0 - 24.5) |
| | p (interaction) | | 0.05 (CT -TT vs CC) |
| Combined advanced AMD | | | |
| | GG | 1.0 | 0.9 (0.6 - 1.5) |
| | GT | 3.9 (2.4 - 6.3) | 2.6 (1.6 - 4.1) |
| | TT | 21.2 (6.3 - 71.9) | 12.8 (4.3 - 37.9) |
| | p (interaction) | | 0.32(CT-TT versus CC) |
| Combined advanced AMD | | | |
| | CC | 1.0 | 0.9 (0.6 - 1.3) |
| | CT/TT | 0.3 (0.2 - 0.6) | 0.1 (0.1 - 0.3) |
| | p (interaction) | | 0.14 (CT-TT versus CC) |
| Combined advanced AMD | 1.0 | | |
| | GG | 0.4 (0.1 - 1.4) | 0.9 (0.6 - 1.2) |
| | CG/CC | | 0.2 (0.1 - 0.5) |
| | P (Interaction) | | 0.13 (CT-TT versus CC) |
| Combined Advanced AMD | | 1.0 (0.6 - 1.4) | |
| | CC | 1.0 | |
| | CG | 1.8 (1.1 - 2.8) | 1.4 (0.9 - 2.2) |
| | GG | 8.8 (2.0 - 39.4) | 1.5 (0.6 - 3.8) |
| | p (interaction) | | 0.10 (CT-TT versus CC) |
| Combined advanced AMD | | | |
| | CC | 1.0 | 0.7 (0.4 - 1.3) |
| | CT | 1.5 (0.9 - 2.5) | 0.9 (0.5 - 1.5) |
| | TT | 1.1 (0.6 - 2.0) | 2.1 (1.1 - 4.1) |
| p (interaction) | 0.04 (CT-TT versus CC) |
*OR=Odds Ratio (adjusted for age, gender, education, smoking, BMI, calorie adjusted lutein, and treatment), CI=95% Confidence Interval.