Literature DB >> 21139222

Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of the N-terminal domain of DEAD-box RNA helicase from Staphylococcus aureus strain Mu50.

Soo Young Lee1, Ha Yun Jung, Tae-O Kim, Dong-Won Im, Ki-Young You, Jang-Mi Back, Yangmee Kim, Hak Jun Kim, Whanchul Shin, Yong-Seok Heo.   

Abstract

DEAD-box helicases are enzymes with an ATP-dependent RNA-unwinding function that are involved in a variety of cellular processes including RNA splicing, ribosome biogenesis and RNA degradation. In this study, the N-terminal domain of DEAD-box RNA helicase from Staphylococcus aureus strain Mu50 was overexpressed in Escherichia coli, purified and crystallized. Diffraction data were collected to 2.60 Å resolution using a synchrotron-radiation source. The crystal belonged to space group P1, with unit-cell parameters a=70.81, b=80.23, c=86.25 Å, α=69.54, β=66.54, γ=87.32°. The unit cell contained six molecules, with a corresponding VM of 2.91 Å3 Da(-1) and a solvent content of 56.1%.

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Year:  2010        PMID: 21139222      PMCID: PMC2998381          DOI: 10.1107/S1744309110043149

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

1.  Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii.

Authors:  R M Story; H Li; J N Abelson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

Review 2.  Helicase structure and mechanism.

Authors:  Jonathan M Caruthers; David B McKay
Journal:  Curr Opin Struct Biol       Date:  2002-02       Impact factor: 6.809

3.  A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing.

Authors:  Sabine Mohr; John M Stryker; Alan M Lambowitz
Journal:  Cell       Date:  2002-06-14       Impact factor: 41.582

4.  Crystal structure of the BstDEAD N-terminal domain: a novel DEAD protein from Bacillus stearothermophilus.

Authors:  Andrew B Carmel; Brian W Matthews
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

Review 5.  DEAD-box proteins: the driving forces behind RNA metabolism.

Authors:  Sanda Rocak; Patrick Linder
Journal:  Nat Rev Mol Cell Biol       Date:  2004-03       Impact factor: 94.444

6.  Birth of the D-E-A-D box.

Authors:  P Linder; P F Lasko; M Ashburner; P Leroy; P J Nielsen; K Nishi; J Schnier; P P Slonimski
Journal:  Nature       Date:  1989-01-12       Impact factor: 49.962

7.  Crystal structure and nucleotide binding of the Thermus thermophilus RNA helicase Hera N-terminal domain.

Authors:  Markus G Rudolph; Ramona Heissmann; Julia G Wittmann; Dagmar Klostermeier
Journal:  J Mol Biol       Date:  2006-07-12       Impact factor: 5.469

8.  The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis.

Authors:  N Kyle Tanner; Olivier Cordin; Josette Banroques; Monique Doère; Patrick Linder
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

9.  Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A.

Authors:  A Pause; N Sonenberg
Journal:  EMBO J       Date:  1992-07       Impact factor: 11.598

10.  Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.

Authors:  J E Walker; M Saraste; M J Runswick; N J Gay
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

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  1 in total

1.  Dependence of RIG-I Nucleic Acid-Binding and ATP Hydrolysis on Activation of Type I Interferon Response.

Authors:  Yu Mi Baek; Soojin Yoon; Yeo Eun Hwang; Dong-Eun Kim
Journal:  Immune Netw       Date:  2016-08-23       Impact factor: 6.303

  1 in total

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