Literature DB >> 21136793

Applications of protein microarrays for biomarker discovery.

Niroshan Ramachandran1, Sanjeeva Srivastava, Joshua Labaer.   

Abstract

The search for new biomarkers for diagnosis, prognosis, and therapeutic monitoring of diseases continues in earnest despite dwindling success at finding novel reliable markers. Some of the current markers in clinical use do not provide optimal sensitivity and specificity, with the prostate cancer antigen (PSA) being one of many such examples. The emergence of proteomic techniques and systems approaches to study disease pathophysiology has rekindled the quest for new biomarkers. In particular the use of protein microarrays has surged as a powerful tool for large-scale testing of biological samples. Approximately half the reports on protein microarrays have been published in the last two years especially in the area of biomarker discovery. In this review, we will discuss the application of protein microarray technologies that offer unique opportunities to find novel biomarkers.
Copyright © 2008 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Year:  2008        PMID: 21136793      PMCID: PMC3158026          DOI: 10.1002/prca.200800032

Source DB:  PubMed          Journal:  Proteomics Clin Appl        ISSN: 1862-8346            Impact factor:   3.494


  86 in total

Review 1.  Protein biomarker discovery and validation: the long and uncertain path to clinical utility.

Authors:  Nader Rifai; Michael A Gillette; Steven A Carr
Journal:  Nat Biotechnol       Date:  2006-08       Impact factor: 54.908

2.  Design of recombinant antibody microarrays for serum protein profiling: targeting of complement proteins.

Authors:  Johan Ingvarsson; Anette Larsson; Anders G Sjöholm; Lennart Truedsson; Bo Jansson; Carl A K Borrebaeck; Christer Wingren
Journal:  J Proteome Res       Date:  2007-08-16       Impact factor: 4.466

3.  Design of recombinant antibody microarrays for complex proteome analysis: choice of sample labeling-tag and solid support.

Authors:  Christer Wingren; Johan Ingvarsson; Linda Dexlin; Dominika Szul; Carl A K Borrebaeck
Journal:  Proteomics       Date:  2007-09       Impact factor: 3.984

4.  Protein array technology to detect HER2 (erbB-2)-induced 'cytokine signature' in breast cancer.

Authors:  Alejandro Vazquez-Martin; Ramon Colomer; Javier A Menendez
Journal:  Eur J Cancer       Date:  2007-03-26       Impact factor: 9.162

5.  Autoantibody signatures in prostate cancer.

Authors:  Xiaoju Wang; Jianjun Yu; Arun Sreekumar; Sooryanarayana Varambally; Ronglai Shen; Donald Giacherio; Rohit Mehra; James E Montie; Kenneth J Pienta; Martin G Sanda; Philip W Kantoff; Mark A Rubin; John T Wei; Debashis Ghosh; Arul M Chinnaiyan
Journal:  N Engl J Med       Date:  2005-09-22       Impact factor: 91.245

6.  A native antigen "reverse capture" microarray platform for autoantibody profiling of prostate cancer sera.

Authors:  Joshua R Ehrlich; Robert J Caiazzo; Weiliang Qiu; Oliver W Tassinari; Michael P O'Leary; Jerome P Richie; Brian C-S Liu
Journal:  Proteomics Clin Appl       Date:  2007-04-19       Impact factor: 3.494

7.  The analysis of doxorubicin resistance in human breast cancer cells using antibody microarrays.

Authors:  Laura Smith; Mark B Watson; Sara L O'Kane; Philip J Drew; Michael J Lind; Lynn Cawkwell
Journal:  Mol Cancer Ther       Date:  2006-08       Impact factor: 6.261

8.  Antitumor mechanisms of combined gastrin-releasing peptide receptor and epidermal growth factor receptor targeting in head and neck cancer.

Authors:  Qing Zhang; Neil E Bhola; Vivian Wai Yan Lui; Doris R Siwak; Sufi M Thomas; Christopher T Gubish; Jill M Siegfried; Gordon B Mills; Dong Shin; Jennifer Rubin Grandis
Journal:  Mol Cancer Ther       Date:  2007-04       Impact factor: 6.261

9.  Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.

Authors:  Yanhui Hu; Andreas Rolfs; Bhupinder Bhullar; Tellamraju V S Murthy; Cong Zhu; Michael F Berger; Anamaria A Camargo; Fontina Kelley; Seamus McCarron; Daniel Jepson; Aaron Richardson; Jacob Raphael; Donna Moreira; Elena Taycher; Dongmei Zuo; Stephanie Mohr; Michael F Kane; Janice Williamson; Andrew Simpson; Martha L Bulyk; Edward Harlow; Gerald Marsischky; Richard D Kolodner; Joshua LaBaer
Journal:  Genome Res       Date:  2007-02-23       Impact factor: 9.043

10.  Diagnostic markers that distinguish colon and ovarian adenocarcinomas: identification by genomic, proteomic, and tissue array profiling.

Authors:  Satoshi Nishizuka; Sing-Tsung Chen; Fuad G Gwadry; Jes Alexander; Sylvia M Major; Uwe Scherf; William C Reinhold; Mark Waltham; Lu Charboneau; Lynn Young; Kimberly J Bussey; Sohyoung Kim; Samir Lababidi; Jae K Lee; Stefania Pittaluga; Dominic A Scudiero; Edward A Sausville; Peter J Munson; Emmanuel F Petricoin; Lance A Liotta; Stephen M Hewitt; Mark Raffeld; John N Weinstein
Journal:  Cancer Res       Date:  2003-09-01       Impact factor: 12.701

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  22 in total

Review 1.  Emerging technology of in situ cell free expression protein microarrays.

Authors:  Amita Nand; Anju Gautam; Javier Batista Pérez; Alejandro Merino; Jinsong Zhu
Journal:  Protein Cell       Date:  2012-02       Impact factor: 14.870

2.  Serum peptidome profiling in patients with gastric cancer.

Authors:  Juan Yang; Yong-Chun Song; Cheng-Xue Dang; Tu-Sheng Song; Zhi-Gang Liu; You-Min Guo; Zong-Fang Li; Chen Huang
Journal:  Clin Exp Med       Date:  2011-07-08       Impact factor: 3.984

3.  A versatile protein microarray platform enabling antibody profiling against denatured proteins.

Authors:  Jie Wang; Kristi Barker; Jason Steel; Jin Park; Justin Saul; Fernanda Festa; Garrick Wallstrom; Xiaobo Yu; Xiaofang Bian; Karen S Anderson; Jonine D Figueroa; Joshua LaBaer; Ji Qiu
Journal:  Proteomics Clin Appl       Date:  2013-05-17       Impact factor: 3.494

4.  Antigen Analysis of Pre-Eclamptic Plasma Antibodies Using Escherichia Coli Proteome Chips.

Authors:  Te-Yao Hsu; Jyun-Mu Lin; Mai-Huong T Nguyen; Feng-Hsiang Chung; Ching-Chang Tsai; Hsin-Hsin Cheng; Yun-Ju Lai; Hsuan-Ning Hung; Chien-Sheng Chen
Journal:  Mol Cell Proteomics       Date:  2017-12-28       Impact factor: 5.911

5.  Identification of Antibody Targets for Tuberculosis Serology using High-Density Nucleic Acid Programmable Protein Arrays.

Authors:  Lusheng Song; Garrick Wallstrom; Xiaobo Yu; Marika Hopper; Jennifer Van Duine; Jason Steel; Jin Park; Peter Wiktor; Peter Kahn; Al Brunner; Douglas Wilson; Elizabeth R Jenny-Avital; Ji Qiu; Joshua Labaer; D Mitchell Magee; Jacqueline M Achkar
Journal:  Mol Cell Proteomics       Date:  2017-02-21       Impact factor: 5.911

6.  Antibody profiling of bipolar disorder using Escherichia coli proteome microarrays.

Authors:  Po-Chung Chen; Guan-Da Syu; Kuo-Hsuan Chung; Yu-Hsuan Ho; Feng-Hsiang Chung; Pao-Huan Chen; Jyun-Mu Lin; Yi-Wen Chen; Shang-Ying Tsai; Chien-Sheng Chen
Journal:  Mol Cell Proteomics       Date:  2014-12-24       Impact factor: 5.911

7.  Mass-transport limitations in spot-based microarrays.

Authors:  Ming Zhao; Xuefeng Wang; David Nolte
Journal:  Biomed Opt Express       Date:  2010-09-20       Impact factor: 3.732

8.  Leptospiral outer membrane protein microarray, a novel approach to identification of host ligand-binding proteins.

Authors:  Marija Pinne; James Matsunaga; David A Haake
Journal:  J Bacteriol       Date:  2012-09-07       Impact factor: 3.490

9.  Quantitative selection and parallel characterization of aptamers.

Authors:  Minseon Cho; Seung Soo Oh; Jeff Nie; Ron Stewart; Michael Eisenstein; James Chambers; Jamey D Marth; Faye Walker; James A Thomson; H Tom Soh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

10.  Detection of biomarkers using recombinant antibodies coupled to nanostructured platforms.

Authors:  Michael R Kierny; Thomas D Cunningham; Brian K Kay
Journal:  Nano Rev       Date:  2012-07-23
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