Literature DB >> 21136731

Proteomic analysis of serum, plasma, and lymph for the identification of biomarkers.

Zhaojing Meng1, Timothy D Veenstra.   

Abstract

Probably no topic has generated more excitement in the world of proteomics than the search for biomarkers. This excitement has been generated by two realities: the constant need for better biomarkers that can be used for disease diagnosis and prognosis, and the recent developments in proteomic technologies that are capable of scanning the individual proteins within varying complex clinical samples. Ideally a biomarker would be assayable from a noninvasively collected sample, therefore, much of the focus in proteomics has been on the analysis of biofluids such as serum, plasma, urine, cerebrospinal fluid, lymph, etc. While the discovery of biomarkers has been elusive, there have been many advances made in the understanding of the proteome content of various biofluids, and in the technologies used for their analysis, that continues to point the research community toward new methods for achieving the ultimate goal of identifying novel disease-specific biomarkers. In this review, we will describe and discuss many of the proteomic approaches taken in an attempt to find novel biomarkers in serum, plasma, and lymph.
Copyright © 2007 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Year:  2007        PMID: 21136731      PMCID: PMC7167890          DOI: 10.1002/prca.200700243

Source DB:  PubMed          Journal:  Proteomics Clin Appl        ISSN: 1862-8346            Impact factor:   3.494


  39 in total

1.  An investigation into the human serum "interactome".

Authors:  Ming Zhou; David A Lucas; King C Chan; Haleem J Issaq; Emanuel F Petricoin; Lance A Liotta; Timothy D Veenstra; Thomas P Conrads
Journal:  Electrophoresis       Date:  2004-05       Impact factor: 3.535

2.  Multidimensional protein profiling technology and its application to human plasma proteome.

Authors:  Kiyonaga Fujii; Tomoyo Nakano; Takeshi Kawamura; Fumihiko Usui; Yasuhiko Bando; Rong Wang; Toshihide Nishimura
Journal:  J Proteome Res       Date:  2004 Jul-Aug       Impact factor: 4.466

3.  Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.

Authors:  Yufeng Shen; Jon M Jacobs; David G Camp; Ruihua Fang; Ronald J Moore; Richard D Smith; Wenzhong Xiao; Ronald W Davis; Ronald G Tompkins
Journal:  Anal Chem       Date:  2004-02-15       Impact factor: 6.986

4.  Plasma proteome of severe acute respiratory syndrome analyzed by two-dimensional gel electrophoresis and mass spectrometry.

Authors:  Jenn-Han Chen; Yu-Wang Chang; Chen-Wen Yao; Tzong-Shi Chiueh; Su-Chin Huang; Ko-Yi Chien; An Chen; Feng-Yee Chang; Chi-Huey Wong; Yu-Ju Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-30       Impact factor: 11.205

5.  Differences among techniques for high-abundant protein depletion.

Authors:  Nina Zolotarjova; James Martosella; Gordon Nicol; Jerome Bailey; Barry E Boyes; William C Barrett
Journal:  Proteomics       Date:  2005-08       Impact factor: 3.984

Review 6.  Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: implications for clinical proteomics.

Authors:  Alex J Rai; Frank Vitzthum
Journal:  Expert Rev Proteomics       Date:  2006-08       Impact factor: 3.940

7.  High dynamic range characterization of the trauma patient plasma proteome.

Authors:  Tao Liu; Wei-Jun Qian; Marina A Gritsenko; Wenzhong Xiao; Lyle L Moldawer; Amit Kaushal; Matthew E Monroe; Susan M Varnum; Ronald J Moore; Samuel O Purvine; Ronald V Maier; Ronald W Davis; Ronald G Tompkins; David G Camp; Richard D Smith
Journal:  Mol Cell Proteomics       Date:  2006-05-09       Impact factor: 5.911

8.  A comparison of serum versus heparinized plasma for routine chemistry tests.

Authors:  G Lum; S R Gambino
Journal:  Am J Clin Pathol       Date:  1974-01       Impact factor: 2.493

9.  Use of proteomic patterns in serum to identify ovarian cancer.

Authors:  Emanuel F Petricoin; Ali M Ardekani; Ben A Hitt; Peter J Levine; Vincent A Fusaro; Seth M Steinberg; Gordon B Mills; Charles Simone; David A Fishman; Elise C Kohn; Lance A Liotta
Journal:  Lancet       Date:  2002-02-16       Impact factor: 79.321

10.  Biomarkers and diagnosis; protein biomarkers in serum of pediatric patients with severe traumatic brain injury identified by ICAT-LC-MS/MS.

Authors:  Arsalan S Haqqani; James S Hutchison; Roxanne Ward; Danica B Stanimirovic
Journal:  J Neurotrauma       Date:  2007-01       Impact factor: 5.269

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  14 in total

1.  The Dendritic Cell Major Histocompatibility Complex II (MHC II) Peptidome Derives from a Variety of Processing Pathways and Includes Peptides with a Broad Spectrum of HLA-DM Sensitivity.

Authors:  Cristina C Clement; Aniuska Becerra; Liusong Yin; Valerio Zolla; Liling Huang; Simone Merlin; Antonia Follenzi; Scott A Shaffer; Lawrence J Stern; Laura Santambrogio
Journal:  J Biol Chem       Date:  2016-01-06       Impact factor: 5.157

2.  Systematic internal standard selection for capillary liquid chromatography-mass spectrometry time normalization to facilitate serum proteomics.

Authors:  Karen Merrell; Craig D Thulin; M Sean Esplin; Steven W Graves
Journal:  J Biomol Tech       Date:  2008-12

3.  Carrying yourself: self antigen composition of the lymphatic fluid.

Authors:  Laura Santambrogio; Lawrence J Stern
Journal:  Lymphat Res Biol       Date:  2013-09-11       Impact factor: 2.589

Review 4.  Before you analyze a human specimen, think quality, variability, and bias.

Authors:  Mark David Lim; Anthony Dickherber; Carolyn C Compton
Journal:  Anal Chem       Date:  2010-11-29       Impact factor: 6.986

5.  Correlation of pre-operative plasma protein concentrations in cardiac surgery patients with bleeding outcomes using a targeted quantitative proteomics approach.

Authors:  Nathan Clendenen; Ashley Tollefson; Monika Dzieciatkowska; Alice Cambiaghi; Manuela Ferrario; Miranda Kroehl; Anirban Banerjee; Angelo D'Alessandro; Kirk C Hansen; Nathaen Weitzel
Journal:  Proteomics Clin Appl       Date:  2017-03-07       Impact factor: 3.494

6.  Protein expression profiles of human lymph and plasma mapped by 2D-DIGE and 1D SDS-PAGE coupled with nanoLC-ESI-MS/MS bottom-up proteomics.

Authors:  Cristina C Clement; David Aphkhazava; Edward Nieves; Myrasol Callaway; Waldemar Olszewski; Olaf Rotzschke; Laura Santambrogio
Journal:  J Proteomics       Date:  2012-11-30       Impact factor: 4.044

7.  Lymph is not a plasma ultrafiltrate: a proteomic analysis of injured patients.

Authors:  Monika Dzieciatkowska; Angelo D'Alessandro; Ernest E Moore; Max Wohlauer; Anirban Banerjee; Christopher C Silliman; Kirk C Hansen
Journal:  Shock       Date:  2014-12       Impact factor: 3.454

Review 8.  Contribution of the plasma and lymph Degradome and Peptidome to the MHC Ligandome.

Authors:  Laura Santambrogio; Hans-Georg Rammensee
Journal:  Immunogenetics       Date:  2018-10-20       Impact factor: 2.846

9.  Lymphatic Cannulation for Lymph Sampling and Molecular Delivery.

Authors:  David C Zawieja; Sangeetha Thangaswamy; Wei Wang; Raquel Furtado; Cristina C Clement; Zachary Papadopoulos; Marco Vigano; Eric A Bridenbaugh; Lello Zolla; Anatoliy A Gashev; Jonathan Kipnis; Gregoire Lauvau; Laura Santambrogio
Journal:  J Immunol       Date:  2019-09-13       Impact factor: 5.426

10.  Serum proteomic profiling reveals fragments of MYOM3 as potential biomarkers for monitoring the outcome of therapeutic interventions in muscular dystrophies.

Authors:  Jérémy Rouillon; Jérôme Poupiot; Aleksandar Zocevic; Fatima Amor; Thibaut Léger; Camille Garcia; Jean-Michel Camadro; Brenda Wong; Robin Pinilla; Jérémie Cosette; Anna M L Coenen-Stass; Graham Mcclorey; Thomas C Roberts; Matthew J A Wood; Laurent Servais; Bjarne Udd; Thomas Voit; Isabelle Richard; Fedor Svinartchouk
Journal:  Hum Mol Genet       Date:  2015-06-09       Impact factor: 6.150

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