Literature DB >> 21122828

ARMS2/HTRA1 locus can confer differential susceptibility to the advanced subtypes of age-related macular degeneration.

Lucia Sobrin1, Robyn Reynolds, Yi Yu, Jesen Fagerness, Nicolas Leveziel, Paul S Bernstein, Eric H Souied, Mark J Daly, Johanna M Seddon.   

Abstract

PURPOSE: To determine if genetic variants that have been associated with age-related macular degeneration (AMD) have a differential effect on the risk of choroidal neovascularization (CNV) and geographic atrophy.
DESIGN: Genetic association study.
SETTING: Multicenter study. STUDY POPULATION: Seven hundred forty-nine participants with geographic atrophy and 3209 participants with CNV were derived from 4 AMD studies with similar procedures from Tufts Medical Center, the Age-Related Eye Disease Study, University of Utah, and Hopital Intercommunal de Creteil. PROCEDURES: AMD grade was assigned based on fundus photography and examination using the clinical age-related maculopathy staging system. All samples were genotyped for single nucleotide polymorphisms (SNPs) previously associated with AMD. Allele frequencies were compared between participants with CNV and geographic atrophy using PLINK within each cohort and Mantel-Haenszel meta-analysis was performed to combine odds ratios (OR). MAIN OUTCOME MEASURES: Differences in allele frequencies between participants with geographic atrophy and CNV.
RESULTS: The frequency of the T allele of ARMS2/HTRA1 rs10490924 was significantly higher in participants with CNV than in those with geographic atrophy (OR, 1.37; 95% confidence interval, 1.21-1.54; P value = 4.2 × 10(-7)). This result remained statistically significant when excluding individuals who had geographic atrophy in 1 eye and CNV in the contralateral eye (P = 2.2 × 10(-4)). None of the other SNPs showed a significant differential effect for CNV vs geographic atrophy, including CFH, C2/CFB, C3, CFI, LIPC, and TIMP3.
CONCLUSIONS: Genetic variation at the ARMS2/HTRA1 locus confers a differential risk for CNV vs geographic atrophy in a well-powered sample.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21122828      PMCID: PMC3763907          DOI: 10.1016/j.ajo.2010.08.015

Source DB:  PubMed          Journal:  Am J Ophthalmol        ISSN: 0002-9394            Impact factor:   5.258


  29 in total

1.  Phenotype analysis of patients with the risk variant LOC387715 (A69S) in age-related macular degeneration.

Authors:  R Keith Shuler; Silke Schmidt; Paul Gallins; Michael A Hauser; William K Scott; Jennifer Caldwell; Anita Agarwal; Jonathan L Haines; Margaret A Pericak-Vance; Eric A Postel
Journal:  Am J Ophthalmol       Date:  2007-12-03       Impact factor: 5.258

2.  PLINK: a tool set for whole-genome association and population-based linkage analyses.

Authors:  Shaun Purcell; Benjamin Neale; Kathe Todd-Brown; Lori Thomas; Manuel A R Ferreira; David Bender; Julian Maller; Pamela Sklar; Paul I W de Bakker; Mark J Daly; Pak C Sham
Journal:  Am J Hum Genet       Date:  2007-07-25       Impact factor: 11.025

3.  Variation in complement factor 3 is associated with risk of age-related macular degeneration.

Authors:  Julian B Maller; Jesen A Fagerness; Robyn C Reynolds; Benjamin M Neale; Mark J Daly; Johanna M Seddon
Journal:  Nat Genet       Date:  2007-09-02       Impact factor: 38.330

4.  Common variation in three genes, including a noncoding variant in CFH, strongly influences risk of age-related macular degeneration.

Authors:  Julian Maller; Sarah George; Shaun Purcell; Jes Fagerness; David Altshuler; Mark J Daly; Johanna M Seddon
Journal:  Nat Genet       Date:  2006-08-27       Impact factor: 38.330

5.  HTRA1 promoter polymorphism in wet age-related macular degeneration.

Authors:  Andrew Dewan; Mugen Liu; Stephen Hartman; Samuel Shao-Min Zhang; David T L Liu; Connie Zhao; Pancy O S Tam; Wai Man Chan; Dennis S C Lam; Michael Snyder; Colin Barnstable; Chi Pui Pang; Josephine Hoh
Journal:  Science       Date:  2006-10-19       Impact factor: 47.728

6.  Association of CFH Y402H and LOC387715 A69S with progression of age-related macular degeneration.

Authors:  Johanna M Seddon; Peter J Francis; Sarah George; Dennis W Schultz; Bernard Rosner; Michael L Klein
Journal:  JAMA       Date:  2007-04-25       Impact factor: 56.272

7.  A variant of mitochondrial protein LOC387715/ARMS2, not HTRA1, is strongly associated with age-related macular degeneration.

Authors:  Atsuhiro Kanda; Wei Chen; Mohammad Othman; Kari E H Branham; Matthew Brooks; Ritu Khanna; Shirley He; Robert Lyons; Gonçalo R Abecasis; Anand Swaroop
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-20       Impact factor: 11.205

8.  HTRA1 variant confers similar risks to geographic atrophy and neovascular age-related macular degeneration.

Authors:  D Joshua Cameron; Zhenglin Yang; Daniel Gibbs; Haoyu Chen; Yuuki Kaminoh; Adam Jorgensen; Jiexi Zeng; Ling Luo; Eric Brinton; Gregory Brinton; John M Brand; Paul S Bernstein; Norman A Zabriskie; Shibo Tang; Ryan Constantine; Zongzhong Tong; Kang Zhang
Journal:  Cell Cycle       Date:  2007-05-16       Impact factor: 4.534

9.  Complement C3 variant and the risk of age-related macular degeneration.

Authors:  John R W Yates; Tiina Sepp; Baljinder K Matharu; Jane C Khan; Deborah A Thurlby; Humma Shahid; David G Clayton; Caroline Hayward; Joanne Morgan; Alan F Wright; Ana Maria Armbrecht; Baljean Dhillon; Ian J Deary; Elizabeth Redmond; Alan C Bird; Anthony T Moore
Journal:  N Engl J Med       Date:  2007-07-18       Impact factor: 91.245

10.  Joint effects of polymorphisms in the HTRA1, LOC387715/ARMS2, and CFH genes on AMD in a Caucasian population.

Authors:  Peter J Francis; Hong Zhang; Andrew Dewan; Josephine Hoh; Michael L Klein
Journal:  Mol Vis       Date:  2008-08-04       Impact factor: 2.367

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  34 in total

Review 1.  Vision from next generation sequencing: multi-dimensional genome-wide analysis for producing gene regulatory networks underlying retinal development, aging and disease.

Authors:  Hyun-Jin Yang; Rinki Ratnapriya; Tiziana Cogliati; Jung-Woong Kim; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2015-02-07       Impact factor: 21.198

2.  Protective coding variants in CFH and PELI3 and a variant near CTRB1 are associated with age-related macular degeneration†.

Authors:  Yi Yu; Erin K Wagner; Eric H Souied; Sanna Seitsonen; Ilkka J Immonen; Paavo Häppölä; Soumya Raychaudhuri; Mark J Daly; Johanna M Seddon
Journal:  Hum Mol Genet       Date:  2016-12-01       Impact factor: 6.150

3.  Lens status influences the association between CFH polymorphisms and age-related macular degeneration: findings from two population-based studies in Singapore.

Authors:  Chee Wai Wong; Jiemin Liao; Gemmy C Cheung; Chiea Chuen Khor; Eranga N Vithana; Jie Jin Wang; Paul Mitchell; Tin Aung; Tien Y Wong; Ching-Yu Cheng
Journal:  PLoS One       Date:  2015-03-18       Impact factor: 3.240

4.  Association of Rare Predicted Loss-of-Function Variants in Cellular Pathways with Sub-Phenotypes in Age-Related Macular Degeneration.

Authors:  Alexandra Pietraszkiewicz; Freekje van Asten; Alan Kwong; Rinki Ratnapriya; Goncalo Abecasis; Anand Swaroop; Emily Y Chew
Journal:  Ophthalmology       Date:  2017-12-08       Impact factor: 12.079

5.  Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.

Authors:  Lucia Sobrin; Stephan Ripke; Yi Yu; Jesen Fagerness; Tushar R Bhangale; Perciliz L Tan; Eric H Souied; Gabriëlle H S Buitendijk; Joanna E Merriam; Andrea J Richardson; Soumya Raychaudhuri; Robyn Reynolds; Kimberly A Chin; Aaron Y Lee; Nicolas Leveziel; Donald J Zack; Peter Campochiaro; R Theodore Smith; Gaetano R Barile; Ruth E Hogg; Usha Chakravarthy; Timothy W Behrens; André G Uitterlinden; Cornelia M van Duijn; Johannes R Vingerling; Milam A Brantley; Paul N Baird; Caroline C W Klaver; Rando Allikmets; Nicholas Katsanis; Robert R Graham; John P A Ioannidis; Mark J Daly; Johanna M Seddon
Journal:  Ophthalmology       Date:  2012-06-15       Impact factor: 12.079

6.  Validation of a prediction algorithm for progression to advanced macular degeneration subtypes.

Authors:  Johanna M Seddon; Robyn Reynolds; Yi Yu; Bernard Rosner
Journal:  JAMA Ophthalmol       Date:  2013-04       Impact factor: 7.389

Review 7.  Age-related macular degeneration: genetics and biology coming together.

Authors:  Lars G Fritsche; Robert N Fariss; Dwight Stambolian; Gonçalo R Abecasis; Christine A Curcio; Anand Swaroop
Journal:  Annu Rev Genomics Hum Genet       Date:  2014-04-16       Impact factor: 8.929

Review 8.  Complement activation and choriocapillaris loss in early AMD: implications for pathophysiology and therapy.

Authors:  S Scott Whitmore; Elliott H Sohn; Kathleen R Chirco; Arlene V Drack; Edwin M Stone; Budd A Tucker; Robert F Mullins
Journal:  Prog Retin Eye Res       Date:  2014-12-05       Impact factor: 21.198

9.  Dietary omega-3 fatty acids, other fat intake, genetic susceptibility, and progression to incident geographic atrophy.

Authors:  Robyn Reynolds; Bernard Rosner; Johanna M Seddon
Journal:  Ophthalmology       Date:  2013-03-05       Impact factor: 12.079

10.  Pharmacogenetics for genes associated with age-related macular degeneration in the Comparison of AMD Treatments Trials (CATT).

Authors:  Stephanie A Hagstrom; Gui-Shuang Ying; Gayle J T Pauer; Gwen M Sturgill-Short; Jiayan Huang; David G Callanan; Ivana K Kim; Michael L Klein; Maureen G Maguire; Daniel F Martin
Journal:  Ophthalmology       Date:  2013-01-18       Impact factor: 12.079

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