| Literature DB >> 21122237 |
Fabrizio Carletti1, Concetta Castilletti, Antonino Di Caro, Maria R Capobianchi, Carla Nisii, Fredy Suter, Marco Rizzi, Alessandra Tebaldi, Antonio Goglio, Cristiana Passerini Tosi, Giuseppe Ippolito.
Abstract
Two travelers returning to Italy from southern Egypt were hospitalized with a fever of unknown origin. Test results showed infection with Alkhurma virus. The geographic distribution of this virus could be broader than previously thought.Entities:
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Year: 2010 PMID: 21122237 PMCID: PMC3294557 DOI: 10.3201/eid1612.101092
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Phylogenetic tree based on sequences of the amplicon produced by the flavivirus nonstructural protein (NS) 5 gene reverse transcription–PCR (amplicon size, 208 bp; position in reference AF331718, nt 9077–9275), performed on the acute-phase serum samples of 2 travelers returning to Italy from Egypt (open arrow) showing relationship with other flaviviruses. Sequences are identified by name and GenBank accession number. Multiple alignment of other flavivirus sequences available in GenBank was generated by use of the ClustalW 1.7 software (www.clustal.org) included in the Bioedit package (www.m). The phylogenetic tree was constructed by nucleotide alignment, the Kimura 2-parameter algorithm, and the neighbor-joining method implemented in MEGA 4.1 software (www.megasoftware.net). The robustness of branching patterns was tested by 1,000 bootstrap pseudo-replications. Scale bar indicates nucleotide substitutions per site. DFV, dengue fever virus; JEV, Japanese encephalitis virus; WNFV, West Nile fever virus; TBEV, tick-borne encephalitis virus; OHFV, Omsk hemorrhagic fever virus; KFDV, Kyasanur Forest disease virus.
Figure 2Phylogenetic tree based on the sequences of Alkhurma hemorrhagic fever virus E gene amplicon (amplicon size, 516 bp; position in reference AF331718, nt 1398–1913),obtained from acute-phase serum samples from a patient who had traveled to Egypt (open arrow) with respect to other flaviviruses. Sequences are identified by name and GenBank accession number. The phylogenetic tree was constructed by nucleotide alignment, the Kimura 2-parameter algorithm, and the neighbor-joining method implemented in MEGA 4.1 software (www.megasoftware.net). The robustness of branching patterns was tested by 1,000 bootstrap pseudo-replications. Scale bar indicates nucleotide substitutions per site. DFV, dengue fever virus; JEV, Japanese encephalitis virus; WNFV, West Nile fever virus; TBEV, tick-borne encephalitis virus; OHFV, Omsk hemorrhagic fever virus; KFDV, Kyasanur Forest disease virus. The relevant part of the tree is enlarged at right.