Literature DB >> 8570593

Population dynamics of flaviviruses revealed by molecular phylogenies.

P M Zanotto1, E A Gould, G F Gao, P H Harvey, E C Holmes.   

Abstract

The phylogeny of 123 complete envelope gene sequences was reconstructed in order to understand the evolution of tick- and mosquito-borne flaviviruses. An analysis of phylogenetic tree structure reveals a continual and asymmetric branching process in the tick-borne flaviviruses, compared with an explosive radiation in the last 200 years in viruses transmitted by mosquitoes. The distinction between these two viral groups probably reflects differences in modes of dispersal, propagation, and changes in the size of host populations. The most serious implication of this work is that growing human populations are being exposed to an expanding range of increasingly diverse viral strains.

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Year:  1996        PMID: 8570593      PMCID: PMC40088          DOI: 10.1073/pnas.93.2.548

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Envelope protein sequences of dengue virus isolates TH-36 and TH-Sman, and identification of a type-specific genetic marker for dengue and tick-borne flaviviruses.

Authors:  S Y Shiu; W R Jiang; J S Porterfield; E A Gould
Journal:  J Gen Virol       Date:  1992-01       Impact factor: 3.891

2.  Molecular evolution and distribution of dengue viruses type 1 and 2 in nature.

Authors:  R Rico-Hesse
Journal:  Virology       Date:  1990-02       Impact factor: 3.616

3.  Antigenic relationships between flaviviruses as determined by cross-neutralization tests with polyclonal antisera.

Authors:  C H Calisher; N Karabatsos; J M Dalrymple; R E Shope; J S Porterfield; E G Westaway; W E Brandt
Journal:  J Gen Virol       Date:  1989-01       Impact factor: 3.891

4.  Multiple sequence alignment with hierarchical clustering.

Authors:  F Corpet
Journal:  Nucleic Acids Res       Date:  1988-11-25       Impact factor: 16.971

5.  Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.

Authors:  M Nei; T Gojobori
Journal:  Mol Biol Evol       Date:  1986-09       Impact factor: 16.240

6.  Non-viraemic transmission of tick-borne encephalitis virus: a mechanism for arbovirus survival in nature.

Authors:  M Labuda; P A Nuttall; O Kozuch; E Elecková; T Williams; E Zuffová; A Sabó
Journal:  Experientia       Date:  1993-09-15

7.  Deriving an amino acid distance matrix.

Authors:  W R Taylor; D T Jones
Journal:  J Theor Biol       Date:  1993-09-07       Impact factor: 2.691

8.  Phylogenetic relationships of dengue-2 viruses.

Authors:  J A Lewis; G J Chang; R S Lanciotti; R M Kinney; L W Mayer; D W Trent
Journal:  Virology       Date:  1993-11       Impact factor: 3.616

9.  Molecular evolution and epidemiology of dengue-3 viruses.

Authors:  R S Lanciotti; J G Lewis; D J Gubler; D W Trent
Journal:  J Gen Virol       Date:  1994-01       Impact factor: 3.891

10.  Comparison of a dengue-2 virus and its candidate vaccine derivative: sequence relationships with the flaviviruses and other viruses.

Authors:  J Blok; S M McWilliam; H C Butler; A J Gibbs; G Weiller; B L Herring; A C Hemsley; J G Aaskov; S Yoksan; N Bhamarapravati
Journal:  Virology       Date:  1992-04       Impact factor: 3.616

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  90 in total

1.  Codon-substitution models for heterogeneous selection pressure at amino acid sites.

Authors:  Z Yang; R Nielsen; N Goldman; A M Pedersen
Journal:  Genetics       Date:  2000-05       Impact factor: 4.562

Review 2.  Molecular strategies for interrupting arthropod-borne virus transmission by mosquitoes.

Authors:  C D Blair; Z N Adelman; K E Olson
Journal:  Clin Microbiol Rev       Date:  2000-10       Impact factor: 26.132

3.  Remotely sensed correlates of phylogeny: tick-borne flaviviruses.

Authors:  Sarah E Randolph; David J Rogers
Journal:  Exp Appl Acarol       Date:  2002       Impact factor: 2.132

Review 4.  Viral evolution and emerging viral infections: what future for the viruses? A theoretical evaluation based on informational spaces and quasispecies.

Authors:  Hugues Tolou; Jean Nicoli; Claude Chastel
Journal:  Virus Genes       Date:  2002-06       Impact factor: 2.332

5.  Genetic relationships and evolution of genotypes of yellow fever virus and other members of the yellow fever virus group within the Flavivirus genus based on the 3' noncoding region.

Authors:  John-Paul Mutebi; René C A Rijnbrand; Heiman Wang; Kate D Ryman; Eryu Wang; Lynda D Fulop; Rick Titball; Alan D T Barrett
Journal:  J Virol       Date:  2004-09       Impact factor: 5.103

6.  Positive selection sites in the surface genes of dengue virus: phylogenetic analysis of the interserotypic branches of the four serotypes.

Authors:  Patsarin Rodpothong; Prasert Auewarakul
Journal:  Virus Genes       Date:  2012-01-06       Impact factor: 2.332

7.  Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses.

Authors:  E Wang; H Ni; R Xu; A D Barrett; S J Watowich; D J Gubler; S C Weaver
Journal:  J Virol       Date:  2000-04       Impact factor: 5.103

8.  Comparison of flavivirus universal primer pairs and development of a rapid, highly sensitive heminested reverse transcription-PCR assay for detection of flaviviruses targeted to a conserved region of the NS5 gene sequences.

Authors:  N Scaramozzino; J M Crance; A Jouan; D A DeBriel; F Stoll; D Garin
Journal:  J Clin Microbiol       Date:  2001-05       Impact factor: 5.948

9.  Calibration of multiple poliovirus molecular clocks covering an extended evolutionary range.

Authors:  Jaume Jorba; Ray Campagnoli; Lina De; Olen Kew
Journal:  J Virol       Date:  2008-02-20       Impact factor: 5.103

10.  Bayesian analysis of amino acid substitution models.

Authors:  John P Huelsenbeck; Paul Joyce; Clemens Lakner; Fredrik Ronquist
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-12-27       Impact factor: 6.237

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