Literature DB >> 21115531

Systems biology of ageing and longevity.

Thomas B L Kirkwood1.   

Abstract

Ageing is intrinsically complex, being driven by multiple causal mechanisms. Each mechanism tends to be partially supported by data indicating that it has a role in the overall cellular and molecular pathways underlying the ageing process. However, the magnitude of this role is usually modest. The systems biology approach combines (i) data-driven modelling, often using the large volumes of data generated by functional genomics technologies, and (ii) hypothesis-driven experimental studies to investigate causal pathways and identify their parameter values in an unusually quantitative manner, which enables the contributions of individual mechanisms and their interactions to be better understood, and allows for the design of experiments explicitly to test the complex predictions arising from such models. A clear example of the success of the systems biology approach in unravelling the complexity of ageing can be seen in recent studies on cell replicative senescence, revealing interactions between mitochondrial dysfunction, telomere erosion and DNA damage. An important challenge also exists in connecting the network of (random) damage-driven proximate mechanisms of ageing with the higher level (genetically specified) signalling pathways that influence longevity. This connection is informed by actions of natural selection on the determinants of ageing and longevity.

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Year:  2011        PMID: 21115531      PMCID: PMC3001307          DOI: 10.1098/rstb.2010.0275

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  36 in total

1.  Accumulation of defective mitochondria through delayed degradation of damaged organelles and its possible role in the ageing of post-mitotic and dividing cells.

Authors:  A Kowald; T B Kirkwood
Journal:  J Theor Biol       Date:  2000-01-21       Impact factor: 2.691

2.  Calorie restriction and aging: a life-history analysis.

Authors:  D P Shanley; T B Kirkwood
Journal:  Evolution       Date:  2000-06       Impact factor: 3.694

3.  A probabilistic functional network of yeast genes.

Authors:  Insuk Lee; Shailesh V Date; Alex T Adai; Edward M Marcotte
Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

Review 4.  With TOR, less is more: a key role for the conserved nutrient-sensing TOR pathway in aging.

Authors:  Pankaj Kapahi; Di Chen; Aric N Rogers; Subhash D Katewa; Patrick Wai-Lun Li; Emma L Thomas; Lutz Kockel
Journal:  Cell Metab       Date:  2010-06-09       Impact factor: 27.287

5.  Random intracellular drift explains the clonal expansion of mitochondrial DNA mutations with age.

Authors:  J L Elson; D C Samuels; D M Turnbull; P F Chinnery
Journal:  Am J Hum Genet       Date:  2001-02-06       Impact factor: 11.025

6.  BRAFE600-associated senescence-like cell cycle arrest of human naevi.

Authors:  Chrysiis Michaloglou; Liesbeth C W Vredeveld; Maria S Soengas; Christophe Denoyelle; Thomas Kuilman; Chantal M A M van der Horst; Donné M Majoor; Jerry W Shay; Wolter J Mooi; Daniel S Peeper
Journal:  Nature       Date:  2005-08-04       Impact factor: 49.962

7.  Modelling the response of FOXO transcription factors to multiple post-translational modifications made by ageing-related signalling pathways.

Authors:  Graham R Smith; Daryl P Shanley
Journal:  PLoS One       Date:  2010-06-14       Impact factor: 3.240

Review 8.  Understanding the odd science of aging.

Authors:  Thomas B L Kirkwood
Journal:  Cell       Date:  2005-02-25       Impact factor: 41.582

9.  Modelling the actions of chaperones and their role in ageing.

Authors:  Carole J Proctor; Csaba Soti; Richard J Boys; Colin S Gillespie; Daryl P Shanley; Darren J Wilkinson; Thomas B L Kirkwood
Journal:  Mech Ageing Dev       Date:  2005-01       Impact factor: 5.432

10.  Feedback between p21 and reactive oxygen production is necessary for cell senescence.

Authors:  João F Passos; Glyn Nelson; Chunfang Wang; Torsten Richter; Cedric Simillion; Carole J Proctor; Satomi Miwa; Sharon Olijslagers; Jennifer Hallinan; Anil Wipat; Gabriele Saretzki; Karl Lenhard Rudolph; Tom B L Kirkwood; Thomas von Zglinicki
Journal:  Mol Syst Biol       Date:  2010-02-16       Impact factor: 11.429

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  51 in total

1.  Genomics of human health and aging.

Authors:  Alexander M Kulminski; Irina Culminskaya
Journal:  Age (Dordr)       Date:  2011-12-16

2.  The new science of ageing.

Authors:  Linda Partridge; Janet Thornton; Gillian Bates
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-01-12       Impact factor: 6.237

Review 3.  The place of genetics in ageing research.

Authors:  Nir Barzilai; Leonard Guarente; Thomas B L Kirkwood; Linda Partridge; Thomas A Rando; P Eline Slagboom
Journal:  Nat Rev Genet       Date:  2012-07-10       Impact factor: 53.242

Review 4.  Developmental aspects of a life course approach to healthy ageing.

Authors:  M A Hanson; C Cooper; A Aihie Sayer; R J Eendebak; G F Clough; J R Beard
Journal:  J Physiol       Date:  2016-02-04       Impact factor: 5.182

5.  Inter-chromosomal level of genome organization and longevity-related phenotypes in humans.

Authors:  Alexander M Kulminski; Irina Culminskaya; Anatoli I Yashin
Journal:  Age (Dordr)       Date:  2012-01-27

Review 6.  A synopsis on aging-Theories, mechanisms and future prospects.

Authors:  João Pinto da Costa; Rui Vitorino; Gustavo M Silva; Christine Vogel; Armando C Duarte; Teresa Rocha-Santos
Journal:  Ageing Res Rev       Date:  2016-06-25       Impact factor: 10.895

Review 7.  Relationship of electrophilic stress to aging.

Authors:  Piotr Zimniak
Journal:  Free Radic Biol Med       Date:  2011-06-12       Impact factor: 7.376

Review 8.  Alzheimer's disease is not "brain aging": neuropathological, genetic, and epidemiological human studies.

Authors:  Peter T Nelson; Elizabeth Head; Frederick A Schmitt; Paulina R Davis; Janna H Neltner; Gregory A Jicha; Erin L Abner; Charles D Smith; Linda J Van Eldik; Richard J Kryscio; Stephen W Scheff
Journal:  Acta Neuropathol       Date:  2011-04-24       Impact factor: 17.088

Review 9.  The Upsides and Downsides of Organelle Interconnectivity.

Authors:  Daniel E Gottschling; Thomas Nyström
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

Review 10.  Understanding the physiology of the ageing individual: computational modelling of changes in metabolism and endurance.

Authors:  Johannes H G M van Beek; Thomas B L Kirkwood; James B Bassingthwaighte
Journal:  Interface Focus       Date:  2016-04-06       Impact factor: 3.906

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